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Revision 1733

VegX-VegBIEN.organisms.csv: Renamed individualOrganismObservation user-defined field htFirstBranchM to heightFirstBranch to be consistent with VegBIEN

View differences:

inputs/SALVIAS-CSV/maps/VegX.organisms.csv
33 33
"cover_percent","/simpleUserdefined[name=cover]/value",
34 34
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
35 35
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
36
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
36
"ht_first_branch_m","/simpleUserdefined[name=heightFirstBranch]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
37 37
"stem_tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
38 38
"stem_tag2","/*ID->/*s/individualOrganism/identificationLabel","Brad: see above"
39 39
"stem_dbh","/diameterBaseDistance[baseDistance/value=1.37]/diameter",
inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv
33 33
"cover_percent","/simpleUserdefined[name=cover]/value",
34 34
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
35 35
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
36
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
36
"ht_first_branch_m","/simpleUserdefined[name=heightFirstBranch]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
37 37
"stem_tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
38 38
"stem_tag2","/*ID->/*s/individualOrganism/identificationLabel","Brad: see above"
39 39
"stem_dbh","/diameterBaseDistance[baseDistance/value=1.37]/diameter",
inputs/SALVIAS/maps/VegX.organisms.csv
41 41
"height_class",,
42 42
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
43 43
"height_m_commercial",,
44
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
44
"ht_first_branch_m","/simpleUserdefined[name=heightFirstBranch]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
45 45
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
46 46
"cover_percent","/simpleUserdefined[name=cover]/value",
47 47
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
inputs/SALVIAS/maps/VegX.organisms.full.csv
41 41
"height_class",,
42 42
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
43 43
"height_m_commercial",,
44
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
44
"ht_first_branch_m","/simpleUserdefined[name=heightFirstBranch]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
45 45
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
46 46
"cover_percent","/simpleUserdefined[name=cover]/value",
47 47
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
mappings/VegX-VegBIEN.organisms.csv
75 75
/diameterBaseDistance[baseDistance/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight,
76 76
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/height,
77 77
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
78
/simpleUserdefined[name=htFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
78
/simpleUserdefined[name=heightFirstBranch]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
79 79
/simpleUserdefined[name=stemHeightFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
80 80
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
81 81
/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
mappings/for_review/VegX-VegBIEN.organisms.csv
75 75
/diameterBaseDistance[value=1.37]/diameter,//stemobservation/diameterbreastheight,
76 76
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightM]/value,//stemobservation/height,
77 77
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,//stemobservation/heightfirstbranch,
78
/simpleUserdefined[name=htFirstBranchM]/value,//stemobservation/heightfirstbranch,
78
/simpleUserdefined[name=heightFirstBranch]/value,//stemobservation/heightfirstbranch,
79 79
/simpleUserdefined[name=stemHeightFirstBranchM]/value,//stemobservation/heightfirstbranch,
80 80
//individualOrganism/identificationLabel,"//stemobservation/stemtag[""""/2=true]/tag",Quotes sort it before tag2
81 81
//individualOrganism/identificationLabel,"//stemobservation/stemtag[""""/2=true]/tag",Quotes sort it before tag2

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