Revision 1736
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/SALVIAS-CSV/test/VegX.plots.xml.ref | ||
|---|---|---|
| 5 | 5 |
<projectID>0</projectID> |
| 6 | 6 |
<partyWithRole><partyID>0</partyID></partyWithRole> |
| 7 | 7 |
<simpleUserdefined> |
| 8 |
<name>sourceaccessioncode</name>
|
|
| 8 |
<name>sourceAccessionCode</name>
|
|
| 9 | 9 |
<value>26102</value> |
| 10 | 10 |
</simpleUserdefined> |
| 11 | 11 |
<plotUniqueIdentifierID>0</plotUniqueIdentifierID> |
| ... | ... | |
| 19 | 19 |
<projectID>1</projectID> |
| 20 | 20 |
<partyWithRole><partyID>1</partyID></partyWithRole> |
| 21 | 21 |
<simpleUserdefined> |
| 22 |
<name>sourceaccessioncode</name>
|
|
| 22 |
<name>sourceAccessionCode</name>
|
|
| 23 | 23 |
<value>26103</value> |
| 24 | 24 |
</simpleUserdefined> |
| 25 | 25 |
<plotUniqueIdentifierID>1</plotUniqueIdentifierID> |
| inputs/SALVIAS-CSV/test/VegX.organisms.xml.ref | ||
|---|---|---|
| 4 | 4 |
<individualOrganismObservation id="0"> |
| 5 | 5 |
<individualOrganismID>0</individualOrganismID> |
| 6 | 6 |
<simpleUserdefined> |
| 7 |
<name>sourceaccessioncode</name>
|
|
| 7 |
<name>sourceAccessionCode</name>
|
|
| 8 | 8 |
<value>607771</value> |
| 9 | 9 |
</simpleUserdefined> |
| 10 | 10 |
<plotObservationID>0</plotObservationID> |
| ... | ... | |
| 36 | 36 |
<individualOrganismObservation id="1"> |
| 37 | 37 |
<individualOrganismID>1</individualOrganismID> |
| 38 | 38 |
<simpleUserdefined> |
| 39 |
<name>sourceaccessioncode</name>
|
|
| 39 |
<name>sourceAccessionCode</name>
|
|
| 40 | 40 |
<value>607722</value> |
| 41 | 41 |
</simpleUserdefined> |
| 42 | 42 |
<plotObservationID>2</plotObservationID> |
| ... | ... | |
| 109 | 109 |
<plotObservation id="1"> |
| 110 | 110 |
<partyWithRole><partyID>1</partyID></partyWithRole> |
| 111 | 111 |
<simpleUserdefined> |
| 112 |
<name>sourceaccessioncode</name>
|
|
| 112 |
<name>sourceAccessionCode</name>
|
|
| 113 | 113 |
<value>26102</value> |
| 114 | 114 |
</simpleUserdefined> |
| 115 | 115 |
<plotUniqueIdentifierID>0</plotUniqueIdentifierID> |
| ... | ... | |
| 126 | 126 |
<plotObservation id="3"> |
| 127 | 127 |
<partyWithRole><partyID>5</partyID></partyWithRole> |
| 128 | 128 |
<simpleUserdefined> |
| 129 |
<name>sourceaccessioncode</name>
|
|
| 129 |
<name>sourceAccessionCode</name>
|
|
| 130 | 130 |
<value>26102</value> |
| 131 | 131 |
</simpleUserdefined> |
| 132 | 132 |
<plotUniqueIdentifierID>2</plotUniqueIdentifierID> |
| inputs/SALVIAS-CSV/maps/VegX.plots.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS-CSV","VegX:/*s/plotObservation","Comments" |
| 2 | 2 |
"project","/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title", |
| 3 |
"PLOT_ID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 3 |
"PLOT_ID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 4 | 4 |
"plot_code",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)" |
| 5 | 5 |
"major_geo","/*UniqueIdentifierID->/*s/plot/location[placeType=continent]/placeName", |
| 6 | 6 |
"country","/*UniqueIdentifierID->/*s/plot/location[placeType=country]/placeName", |
| inputs/SALVIAS-CSV/maps/VegX.organisms.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS-CSV","VegX:/*s/individualOrganismObservation","Comments" |
| 2 |
"OBSERVATION_ID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PLOT_ID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 2 |
"OBSERVATION_ID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PLOT_ID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 4 | 4 |
"plot_code","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
| 5 | 5 |
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 6 | 6 |
"census_date","/*ID->/*s/plotObservation/obsStartDate/_date/year", |
| inputs/SALVIAS-CSV/maps/VegX.plots.full.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS-CSV","VegX:/*s/plotObservation","Comments" |
| 2 | 2 |
"project","/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title", |
| 3 |
"PLOT_ID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 3 |
"PLOT_ID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 4 | 4 |
"plot_code",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)" |
| 5 | 5 |
"major_geo","/*UniqueIdentifierID->/*s/plot/location[placeType=continent]/placeName", |
| 6 | 6 |
"country","/*UniqueIdentifierID->/*s/plot/location[placeType=country]/placeName", |
| inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS-CSV","VegX:/*s/individualOrganismObservation","Comments" |
| 2 |
"OBSERVATION_ID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PLOT_ID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 2 |
"OBSERVATION_ID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PLOT_ID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 4 | 4 |
"plot_code","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
| 5 | 5 |
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 6 | 6 |
"census_date","/*ID->/*s/plotObservation/obsStartDate/_date/year", |
| inputs/SALVIAS/test/VegX.plots.xml.ref | ||
|---|---|---|
| 4 | 4 |
<plotObservation id="0"> |
| 5 | 5 |
<partyWithRole><partyID>0</partyID></partyWithRole> |
| 6 | 6 |
<simpleUserdefined> |
| 7 |
<name>sourceaccessioncode</name>
|
|
| 7 |
<name>sourceAccessionCode</name>
|
|
| 8 | 8 |
<value>1</value> |
| 9 | 9 |
</simpleUserdefined> |
| 10 | 10 |
<projectID>0</projectID> |
| ... | ... | |
| 21 | 21 |
<plotObservation id="1"> |
| 22 | 22 |
<partyWithRole><partyID>1</partyID></partyWithRole> |
| 23 | 23 |
<simpleUserdefined> |
| 24 |
<name>sourceaccessioncode</name>
|
|
| 24 |
<name>sourceAccessionCode</name>
|
|
| 25 | 25 |
<value>2</value> |
| 26 | 26 |
</simpleUserdefined> |
| 27 | 27 |
<projectID>1</projectID> |
| inputs/SALVIAS/test/VegX.organisms.xml.ref | ||
|---|---|---|
| 4 | 4 |
<individualOrganismObservation id="0"> |
| 5 | 5 |
<individualOrganismID>0</individualOrganismID> |
| 6 | 6 |
<simpleUserdefined> |
| 7 |
<name>sourceaccessioncode</name>
|
|
| 7 |
<name>sourceAccessionCode</name>
|
|
| 8 | 8 |
<value>1</value> |
| 9 | 9 |
</simpleUserdefined> |
| 10 | 10 |
<plotObservationID>0</plotObservationID> |
| ... | ... | |
| 28 | 28 |
<individualOrganismObservation id="1"> |
| 29 | 29 |
<individualOrganismID>1</individualOrganismID> |
| 30 | 30 |
<simpleUserdefined> |
| 31 |
<name>sourceaccessioncode</name>
|
|
| 31 |
<name>sourceAccessionCode</name>
|
|
| 32 | 32 |
<value>2</value> |
| 33 | 33 |
</simpleUserdefined> |
| 34 | 34 |
<plotObservationID>2</plotObservationID> |
| ... | ... | |
| 84 | 84 |
<plotObservation id="1"> |
| 85 | 85 |
<partyWithRole><partyID>1</partyID></partyWithRole> |
| 86 | 86 |
<simpleUserdefined> |
| 87 |
<name>sourceaccessioncode</name>
|
|
| 87 |
<name>sourceAccessionCode</name>
|
|
| 88 | 88 |
<value>295</value> |
| 89 | 89 |
</simpleUserdefined> |
| 90 | 90 |
<plotUniqueIdentifierID>0</plotUniqueIdentifierID> |
| ... | ... | |
| 100 | 100 |
<plotObservation id="3"> |
| 101 | 101 |
<partyWithRole><partyID>4</partyID></partyWithRole> |
| 102 | 102 |
<simpleUserdefined> |
| 103 |
<name>sourceaccessioncode</name>
|
|
| 103 |
<name>sourceAccessionCode</name>
|
|
| 104 | 104 |
<value>295</value> |
| 105 | 105 |
</simpleUserdefined> |
| 106 | 106 |
<plotUniqueIdentifierID>2</plotUniqueIdentifierID> |
| inputs/SALVIAS/maps/VegX.plots.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS:plotMetadata","VegX:/*s/plotObservation","Comments" |
| 2 |
"PlotID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 2 |
"PlotID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 3 | 3 |
"orig_filename",, |
| 4 | 4 |
"AccessCode",, |
| 5 | 5 |
"project_id","/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title", |
| inputs/SALVIAS/maps/VegX.organisms.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS:plotObservations","VegX:/*s/individualOrganismObservation","Comments" |
| 2 |
"PlotObsID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PlotID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 2 |
"PlotObsID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PlotID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 4 | 4 |
"PlotCode","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
| 5 | 5 |
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 6 | 6 |
"census_date","/simpleUserdefined[name=collectionDate]/value/_*/date", |
| inputs/SALVIAS/maps/VegX.plots.full.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS:plotMetadata","VegX:/*s/plotObservation","Comments" |
| 2 |
"PlotID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 2 |
"PlotID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 3 | 3 |
"orig_filename",, |
| 4 | 4 |
"AccessCode",, |
| 5 | 5 |
"project_id","/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title", |
| inputs/SALVIAS/maps/VegX.organisms.full.csv | ||
|---|---|---|
| 1 | 1 |
"SALVIAS:plotObservations","VegX:/*s/individualOrganismObservation","Comments" |
| 2 |
"PlotObsID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PlotID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 2 |
"PlotObsID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
|
| 3 |
"PlotID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
|
|
| 4 | 4 |
"PlotCode","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
| 5 | 5 |
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| 6 | 6 |
"census_date","/simpleUserdefined[name=collectionDate]/value/_*/date", |
| mappings/VegX-VegBIEN.plots.csv | ||
|---|---|---|
| 23 | 23 |
/obsStartDate,/obsstartdate, |
| 24 | 24 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/parent_id/locationevent/authorlocationcode, |
| 25 | 25 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 26 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,
|
|
| 26 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,
|
|
| 27 | 27 |
/simpleUserdefined[name=precipitation]/value,/precipitation, |
| 28 | 28 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,/soilobs/acidity, |
| 29 | 29 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,/soilobs/basesaturation, |
| ... | ... | |
| 47 | 47 |
/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/waterdepth/min/_units:[default=m,to=m,to=]/value", |
| 48 | 48 |
:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 49 | 49 |
/partyWithRole/*ID->/parties/party/organizationName,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 50 |
:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
|
| 50 |
:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
|
| mappings/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 23 | 23 |
/*ID->/*s/plotObservation/obsStartDate,/*_id/locationevent/obsstartdate, |
| 24 | 24 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/locationevent/parent_id/locationevent/authorlocationcode, |
| 25 | 25 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 26 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,
|
|
| 26 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,
|
|
| 27 | 27 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value,/*_id/locationevent/precipitation, |
| 28 | 28 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,/*_id/locationevent/soilobs/acidity, |
| 29 | 29 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,/*_id/locationevent/soilobs/basesaturation, |
| ... | ... | |
| 47 | 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/*_id/locationevent/waterdepth/min/_units:[default=m,to=m,to=]/value", |
| 48 | 48 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 49 | 49 |
/*ID->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 50 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,
|
|
| 50 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,
|
|
| 51 | 51 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher,"/_if:[cond/_eq:[left=$../../../_ignore/voucherType,right=direct]]/{then/specimenreplicate,else/voucher/*_id/specimenreplicate:[*_id/taxonoccurrence]}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc",
|
| 52 | 52 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,"/_if:[cond/_eq:[left=$../../../_ignore/voucherType,right=direct]]/{then/specimenreplicate,else/voucher/*_id/specimenreplicate:[*_id/taxonoccurrence]}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1",
|
| 53 | 53 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType",/_ignore/voucherType, |
| 54 | 54 |
/simpleUserdefined[name=authorPlantCode]/value,/aggregateoccurrence/*_id/plantobservation/authorplantcode, |
| 55 | 55 |
/height,/aggregateoccurrence/*_id/plantobservation/overallheight, |
| 56 | 56 |
/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/*_id/plantobservation/overallheight, |
| 57 |
:[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/aggregateoccurrence/*_id/plantobservation/sourceaccessioncode,
|
|
| 57 |
:[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/aggregateoccurrence/*_id/plantobservation/sourceaccessioncode,
|
|
| 58 | 58 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/relatedItem[relationshipType=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,/aggregateoccurrence/*_id/plantobservation/stemobservation/*_id/plantobservation/authorplantcode, |
| 59 | 59 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=count]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/*_id/plantobservation/stemcount, |
| 60 | 60 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/basaldiameter, |
| mappings/for_review/VegX-VegBIEN.plots.csv | ||
|---|---|---|
| 23 | 23 |
/obsStartDate,/obsstartdate, |
| 24 | 24 |
//plot/plotUniqueIdentifier,//locationevent/authorlocationcode, |
| 25 | 25 |
//party/organizationName,//party/organizationname/_alt/1, |
| 26 |
//plotObservation/simpleUserdefined[name=sourceaccessioncode]/value,//locationevent/sourceaccessioncode,
|
|
| 26 |
//plotObservation/simpleUserdefined[name=sourceAccessionCode]/value,//locationevent/sourceaccessioncode,
|
|
| 27 | 27 |
/simpleUserdefined[name=precipitation]/value,/precipitation, |
| 28 | 28 |
//*s/abioticObservation/simpleUserdefined[name=acidity]/value,//soilobs/acidity, |
| 29 | 29 |
//*s/abioticObservation/simpleUserdefined[name=base]/value,//soilobs/basesaturation, |
| ... | ... | |
| 47 | 47 |
//geospatial/minimumDepthInMeters,//waterdepth/min/_units/value, |
| 48 | 48 |
//plot/plotUniqueIdentifier,/authorlocationcode, |
| 49 | 49 |
//party/organizationName,//party/organizationname/_alt/1, |
| 50 |
/simpleUserdefined[name=sourceaccessioncode]/value,/sourceaccessioncode, |
|
| 50 |
/simpleUserdefined[name=sourceAccessionCode]/value,/sourceaccessioncode, |
|
| mappings/for_review/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 23 | 23 |
//plotObservation/obsStartDate,//locationevent/obsstartdate, |
| 24 | 24 |
//plot/plotUniqueIdentifier,//locationevent/authorlocationcode, |
| 25 | 25 |
//party/organizationName,//party/organizationname/_alt/1, |
| 26 |
//plotObservation/simpleUserdefined[name=sourceaccessioncode]/value,//locationevent/sourceaccessioncode,
|
|
| 26 |
//plotObservation/simpleUserdefined[name=sourceAccessionCode]/value,//locationevent/sourceaccessioncode,
|
|
| 27 | 27 |
//plotObservation/simpleUserdefined[name=precipitation]/value,//locationevent/precipitation, |
| 28 | 28 |
//*s/abioticObservation/simpleUserdefined[name=acidity]/value,//soilobs/acidity, |
| 29 | 29 |
//*s/abioticObservation/simpleUserdefined[name=base]/value,//soilobs/basesaturation, |
| ... | ... | |
| 47 | 47 |
//geospatial/minimumDepthInMeters,//waterdepth/min/_units/value, |
| 48 | 48 |
//plot/plotUniqueIdentifier,//locationevent/authorlocationcode, |
| 49 | 49 |
//party/organizationName,//party/organizationname/_alt/1, |
| 50 |
//plotObservation/simpleUserdefined[name=sourceaccessioncode]/value,//locationevent/sourceaccessioncode,
|
|
| 50 |
//plotObservation/simpleUserdefined[name=sourceAccessionCode]/value,//locationevent/sourceaccessioncode,
|
|
| 51 | 51 |
//taxonNameUsageConcept/voucher,"/_if/{then/specimenreplicate,else/voucher/*_id/specimenreplicate}//catalognumber_dwc",
|
| 52 | 52 |
//party/organizationName,"/_if/{then/specimenreplicate,else/voucher/*_id/specimenreplicate}//datasource_id/party/organizationname/_alt/1",
|
| 53 | 53 |
//*s/taxonDetermination[role=collector]/groupType,/_ignore/voucherType, |
| 54 | 54 |
/simpleUserdefined[name=authorPlantCode]/value,//plantobservation/authorplantcode, |
| 55 | 55 |
/height,//plantobservation/overallheight, |
| 56 | 56 |
/simpleUserdefined[name=stemHeightM]/value,//plantobservation/overallheight, |
| 57 |
/simpleUserdefined[name=sourceaccessioncode]/value,//plantobservation/sourceaccessioncode,
|
|
| 57 |
/simpleUserdefined[name=sourceAccessionCode]/value,//plantobservation/sourceaccessioncode,
|
|
| 58 | 58 |
//taxonNameUsageConcept/voucher,//plantobservation/authorplantcode, |
| 59 | 59 |
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=count]/value,//plantobservation/stemcount, |
| 60 | 60 |
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[value=0]/diameter,//stemobservation/basaldiameter, |
Also available in: Unified diff
VegX-VegBIEN.organisms.csv: Renamed individualOrganismObservation/plotObservation user-defined fields sourceaccessioncode to sourceAccessionCode to be consistent with VegX case sensitivity