Project

General

Profile

« Previous | Next » 

Revision 1755

Added by Aaron Marcuse-Kubitza almost 13 years ago

VegX-VegBIEN.organisms.csv: Renamed individualOrganismObservation user-defined field tag2 to identificationLabel2 to reflect that it will become a second instance of identificationLabel

View differences:

inputs/SALVIAS-CSV/test/VegX.organisms.xml.ref
17 17 
                <value>10</value>
18 18 
            </simpleUserdefined>
19 19 
            <simpleUserdefined>
20 
                <name>tag2</name>
20 
                <name>identificationLabel2</name>
21 21 
                <value>8</value>
22 22 
            </simpleUserdefined>
23 23 
            <simpleUserdefined>
......
45 45 
                <value>100</value>
46 46 
            </simpleUserdefined>
47 47 
            <simpleUserdefined>
48 
                <name>tag2</name>
48 
                <name>identificationLabel2</name>
49 49 
                <value>91</value>
50 50 
            </simpleUserdefined>
51 51 
            <simpleUserdefined>
inputs/SALVIAS-CSV/maps/VegX.organisms.csv
8 8 
"individual_code","/simpleUserdefined[name=authorPlantCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
9 9 
"ind_id",,"Brad: OMIT"
10 10 
"tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11 
"tag2","/simpleUserdefined[name=tag2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
11 
"tag2","/simpleUserdefined[name=identificationLabel2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 12 
"x_position","/relativePlotPosition/relativeX","Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 13 
"y_position","/relativePlotPosition/relativeY","Brad: See comment above for x_position"
14 14 
"voucher_string","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv
8 8 
"individual_code","/simpleUserdefined[name=authorPlantCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
9 9 
"ind_id",,"Brad: OMIT"
10 10 
"tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11 
"tag2","/simpleUserdefined[name=tag2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
11 
"tag2","/simpleUserdefined[name=identificationLabel2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 12 
"x_position","/relativePlotPosition/relativeX","Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 13 
"y_position","/relativePlotPosition/relativeY","Brad: See comment above for x_position"
14 14 
"voucher_string","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
inputs/SALVIAS/maps/VegX.organisms.csv
9 9 
"Ind","/simpleUserdefined[name=authorPlantCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
10 10 
"ind_id",,"Brad: OMIT"
11 11 
"tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 
"tag2","/simpleUserdefined[name=tag2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 
"tag2","/simpleUserdefined[name=identificationLabel2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
13 13 
"x_position","/relativePlotPosition/relativeX","Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
14 14 
"y_position","/relativePlotPosition/relativeY","Brad: See comment above for x_position"
15 15 
"dist",,
inputs/SALVIAS/maps/VegX.organisms.full.csv
9 9 
"Ind","/simpleUserdefined[name=authorPlantCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
10 10 
"ind_id",,"Brad: OMIT"
11 11 
"tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 
"tag2","/simpleUserdefined[name=tag2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 
"tag2","/simpleUserdefined[name=identificationLabel2]/value","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
13 13 
"x_position","/relativePlotPosition/relativeX","Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
14 14 
"y_position","/relativePlotPosition/relativeY","Brad: See comment above for x_position"
15 15 
"dist",,
inputs/SALVIAS/maps/VegX.stems.csv
8 8 
"gentry_dbh","/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter",
9 9 
"stem_notes","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text",
10 10 
"stem_tag1","/*ID->/*s/individualOrganism/identificationLabel",
11 
"stem_tag2","/simpleUserdefined[name=tag2]/value",
11 
"stem_tag2","/simpleUserdefined[name=identificationLabel2]/value",
12 12 
"stem_height_m","/simpleUserdefined[name=height]/value",
13 13 
"stem_height_first_branch_m","/simpleUserdefined[name=heightFirstBranch]/value",
14 14 
"stem_canopy_form","/simpleUserdefined[name=canopyForm]/value",
inputs/SALVIAS/maps/VegX.stems.full.csv
8 8 
"gentry_dbh","/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter",
9 9 
"stem_notes","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text",
10 10 
"stem_tag1","/*ID->/*s/individualOrganism/identificationLabel",
11 
"stem_tag2","/simpleUserdefined[name=tag2]/value",
11 
"stem_tag2","/simpleUserdefined[name=identificationLabel2]/value",
12 12 
"stem_height_m","/simpleUserdefined[name=height]/value",
13 13 
"stem_height_first_branch_m","/simpleUserdefined[name=heightFirstBranch]/value",
14 14 
"stem_canopy_form","/simpleUserdefined[name=canopyForm]/value",
mappings/VegX-VegBIEN.organisms.csv
79 79 
/simpleUserdefined[name=heightFirstBranch]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
80 80 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
81 81 
/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
82 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
83 
/simpleUserdefined[name=tag2]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
82 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=identificationLabel2]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
83 
/simpleUserdefined[name=identificationLabel2]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
84 84 
/relativePlotPosition/relativeX,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition,
85 85 
/relativePlotPosition/relativeY,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,
86 86 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,/aggregateoccurrence/count,
mappings/for_review/VegX-VegBIEN.organisms.csv
79 79 
/simpleUserdefined[name=heightFirstBranch]/value,//stemobservation/heightfirstbranch,
80 80 
//individualOrganism/identificationLabel,"//stemobservation/stemtag[""""/2=true]/tag",Quotes sort it before tag2
81 81 
//individualOrganism/identificationLabel,"//stemobservation/stemtag[""""/2=true]/tag",Quotes sort it before tag2
82 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
83 
/simpleUserdefined[name=tag2]/value,//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
82 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=identificationLabel2]/value,//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
83 
/simpleUserdefined[name=identificationLabel2]/value,//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
84 84 
//relativePlotPosition/relativeX,//stemobservation/xposition,
85 85 
//relativePlotPosition/relativeY,//stemobservation/yposition,
86 86 
//*s/aggregateOrganismObservation/*/aggregateValue/value,//aggregateoccurrence/count,
mappings/for_review/VegX-VegBIEN.stems.csv
11 11 
/simpleUserdefined[name=height]/value,/height,
12 12 
/simpleUserdefined[name=heightFirstBranch]/value,/heightfirstbranch,
13 13 
//individualOrganism/identificationLabel,"/stemtag[""""/2=true]/tag",Quotes sort it before tag2
14 
/simpleUserdefined[name=tag2]/value,/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
14 
/simpleUserdefined[name=identificationLabel2]/value,/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
mappings/VegX-VegBIEN.stems.csv
11 11 
/simpleUserdefined[name=height]/value,/height,
12 12 
/simpleUserdefined[name=heightFirstBranch]/value,/heightfirstbranch,
13 13 
/*ID->/*s/individualOrganism/identificationLabel,"/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
14 
/simpleUserdefined[name=tag2]/value,/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
14 
/simpleUserdefined[name=identificationLabel2]/value,/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,

Also available in: Unified diff