1
|
# CSV I/O
|
2
|
|
3
|
import csv
|
4
|
import StringIO
|
5
|
|
6
|
import strings
|
7
|
import util
|
8
|
|
9
|
delims = ',\t`'
|
10
|
tsv_delim = '\t'
|
11
|
escape = '\\'
|
12
|
|
13
|
ending_placeholder = r'\n'
|
14
|
|
15
|
def is_tsv(dialect): return dialect.delimiter == tsv_delim
|
16
|
|
17
|
def sniff(line):
|
18
|
'''Automatically detects the dialect'''
|
19
|
dialect = csv.Sniffer().sniff(line, delims)
|
20
|
# TSVs usually don't quote fields (nor doublequote embedded quotes)
|
21
|
if is_tsv(dialect): dialect.quoting = csv.QUOTE_NONE
|
22
|
else: dialect.doublequote = True # Sniffer doesn't turn this on by default
|
23
|
return dialect
|
24
|
|
25
|
def stream_info(stream):
|
26
|
'''Automatically detects the dialect based on the header line
|
27
|
@return NamedTuple {header_line, dialect}'''
|
28
|
info = util.NamedTuple()
|
29
|
info.header_line = stream.readline()
|
30
|
if info.header_line != '': info.dialect = sniff(info.header_line)
|
31
|
else: info.dialect = None # line of '' indicates EOF = empty stream
|
32
|
return info
|
33
|
|
34
|
class TsvReader:
|
35
|
'''Unlike csv.reader, for TSVs, interprets \ as escaping a line ending but
|
36
|
ignores it before everything else (e.g. \N for NULL). Also interprets the
|
37
|
'\n' escape sequence as a newline.'''
|
38
|
def __init__(self, stream, dialect):
|
39
|
assert is_tsv(dialect)
|
40
|
self.stream = stream
|
41
|
self.dialect = dialect
|
42
|
|
43
|
def __iter__(self): return self
|
44
|
|
45
|
def next(self):
|
46
|
record = ''
|
47
|
ending = None
|
48
|
while True:
|
49
|
line = self.stream.readline()
|
50
|
if line == '': raise StopIteration
|
51
|
|
52
|
raw_contents, ending = strings.extract_line_ending(line)
|
53
|
contents = strings.remove_suffix(escape, raw_contents)
|
54
|
record += contents
|
55
|
if len(contents) == len(raw_contents): break # no line continuation
|
56
|
record += ending_placeholder
|
57
|
row = csv.reader(StringIO.StringIO(record), self.dialect).next()
|
58
|
return [v.replace(ending_placeholder, '\n') for v in row]
|
59
|
|
60
|
def reader_class(dialect):
|
61
|
if is_tsv(dialect): return TsvReader
|
62
|
else: return csv.reader
|
63
|
|
64
|
def make_reader(stream, dialect): return reader_class(dialect)(stream, dialect)
|
65
|
|
66
|
def reader_and_header(stream):
|
67
|
'''Automatically detects the dialect based on the header line
|
68
|
@return tuple (reader, header)'''
|
69
|
info = stream_info(stream)
|
70
|
reader_class_ = reader_class(info.dialect)
|
71
|
header = reader_class_(StringIO.StringIO(info.header_line),
|
72
|
info.dialect).next()
|
73
|
return (reader_class_(stream, info.dialect), header)
|
74
|
|
75
|
##### csv modifications
|
76
|
|
77
|
# Note that these methods only work on *instances* of Dialect classes
|
78
|
csv.Dialect.__eq__ = lambda self, other: self.__dict__ == other.__dict__
|
79
|
csv.Dialect.__ne__ = lambda self, other: not (self == other)
|