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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  bin 1856 over 12 years Aaron Marcuse-Kubitza bin/map: Use multiprocessing instead of pp for ...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 1854 over 12 years Aaron Marcuse-Kubitza input.Makefile: Editing import: Use $(datasrc) ...
  lib 1852 over 12 years Aaron Marcuse-Kubitza sql.py: index_cols(): Cache return values in db...
  mappings 1843 over 12 years Aaron Marcuse-Kubitza mappings: Build VegX-VegBIEN.organisms.csv from...
  schemas 1751 over 12 years Aaron Marcuse-Kubitza vegbien.ERD.mwb: Fixed lines
  to_do 811 almost 13 years Aaron Marcuse-Kubitza Added to_do/milestones.doc
Makefile 7.72 KB 1845 over 12 years Aaron Marcuse-Kubitza root Makefile: python-Linux: Added `sudo pip in...
README.TXT 2.58 KB 1774 over 12 years Aaron Marcuse-Kubitza README.TXT: Schema changes: Split updating grap...
map 867 Bytes 1299 almost 13 years Aaron Marcuse-Kubitza map: On nimoy, use bien2_staging unless otherwi...

Latest revisions

# Date Author Comment
1856 04/14/2012 12:18 PM Aaron Marcuse-Kubitza

bin/map: Use multiprocessing instead of pp for parallel processing because it's easier to use (it uses the Python threading API and doesn't require providing all the functions a task calls). Allow the user to set the cpus option to to use all system CPUs (needed because in test mode, the default is 0 CPUs to turn off parallel processing).

1855 04/13/2012 04:41 PM Aaron Marcuse-Kubitza

disown_all, stop_imports: Use /bin/bash instead of /bin/sh because array subscripting is used

1854 04/13/2012 04:38 PM Aaron Marcuse-Kubitza

input.Makefile: Editing import: Use $(datasrc) instead of $(db) since $(db) is only set for DB-source inputs

1853 04/13/2012 04:31 PM Aaron Marcuse-Kubitza

input.Makefile: Import: If profile is on and test mode is on, output formatted profile stats to stdout

1852 04/13/2012 03:00 PM Aaron Marcuse-Kubitza

sql.py: index_cols(): Cache return values in db.index_cols

1851 04/13/2012 02:56 PM Aaron Marcuse-Kubitza

bin/map: Don't import pp unless cpus != 0 because it's slow and doesn't need to happen if we're not using parallelization. cpus option defaults to 0 in test mode so tests run faster.

1850 04/13/2012 02:52 PM Aaron Marcuse-Kubitza

sql.py: pkey(): Use pkeys cache from db object instead of parameter

1849 04/13/2012 02:44 PM Aaron Marcuse-Kubitza

sql.py: Wrapped db connection inside an object that can also store the cache of the pkeys and index_cols

1848 04/13/2012 02:27 PM Aaron Marcuse-Kubitza

bin/map: If cpus is 0, run without Parallel Python

1847 04/13/2012 02:19 PM Aaron Marcuse-Kubitza

bin/map: Set up Parallel Python with an env-var-customizable # CPUs

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