| 1 |
188
|
aaronmk
|
# Dynamically-generated organisms maps
|
| 2 |
|
|
genOrganisms = VegX-VegBIEN.organisms.csv
|
| 3 |
|
|
|
| 4 |
|
|
all = $(genOrganisms) \
|
| 5 |
|
|
$(subst .organisms.,.plots.,$(genOrganisms) $(wildcard VegX-*.organisms.csv))
|
| 6 |
|
|
|
| 7 |
|
|
all: FORCE $(all)
|
| 8 |
148
|
aaronmk
|
./join_all_vegbank
|
| 9 |
|
|
./format_all_for_review
|
| 10 |
150
|
aaronmk
|
|
| 11 |
|
|
FORCE:
|
| 12 |
188
|
aaronmk
|
|
| 13 |
|
|
clean: FORCE
|
| 14 |
|
|
rm $(foreach item,$(sort $(all)),$(wildcard $(item)))
|
| 15 |
|
|
|
| 16 |
|
|
VegX-VegBIEN.organisms.csv: \
|
| 17 |
|
|
VegX-VegBank.organisms.csv \
|
| 18 |
|
|
VegBank-VegBIEN.organisms.csv
|
| 19 |
|
|
../scripts/util/join_passthru $+|../scripts/util/sort 1 >$@
|
| 20 |
|
|
|
| 21 |
|
|
chRoot = ../scripts/util/ch_root <$< >$@
|
| 22 |
|
|
|
| 23 |
|
|
chRoot2PlotsLeftVegx =\
|
| 24 |
|
|
env \
|
| 25 |
|
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 26 |
|
|
left_out_root='/*s/plotObservation' \
|
| 27 |
|
|
$(chRoot)
|
| 28 |
|
|
|
| 29 |
|
|
VegX-VegBank.plots.csv: VegX-VegBank.organisms.csv
|
| 30 |
|
|
$(chRoot2PlotsVegxVegbank)
|
| 31 |
|
|
chRoot2PlotsVegxVegbank =\
|
| 32 |
|
|
env \
|
| 33 |
|
|
right_in_root='/taxonObservation/*_ID/observation' \
|
| 34 |
|
|
right_out_root='/observation' \
|
| 35 |
|
|
$(chRoot2PlotsLeftVegx)
|
| 36 |
|
|
|
| 37 |
|
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 38 |
|
|
$(chRoot2PlotsVegxVegbien)
|
| 39 |
|
|
chRoot2PlotsVegxVegbien =\
|
| 40 |
|
|
env \
|
| 41 |
|
|
right_in_root='/taxonObservation/*_ID/plotevent' \
|
| 42 |
|
|
right_out_root='/plotevent' \
|
| 43 |
|
|
$(chRoot2PlotsLeftVegx)
|
