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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  bin 1935 over 12 years Aaron Marcuse-Kubitza Added db_dump_localize to translate a PostgreSQ...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 1931 over 12 years Aaron Marcuse-Kubitza input.Makefile: input.Makefile: Use `$(catSrcs)...
  lib 1936 over 12 years Aaron Marcuse-Kubitza PostgreSQL-MySQL.csv: Remove "CREATE PROCEDURAL...
  mappings 1843 over 12 years Aaron Marcuse-Kubitza mappings: Build VegX-VegBIEN.organisms.csv from...
  schemas 1937 over 12 years Aaron Marcuse-Kubitza main Makefile: VegBIEN DB: db: Use template0 to...
  to_do 811 almost 13 years Aaron Marcuse-Kubitza Added to_do/milestones.doc
Makefile 7.74 KB 1937 over 12 years Aaron Marcuse-Kubitza main Makefile: VegBIEN DB: db: Use template0 to...
README.TXT 2.58 KB 1774 over 12 years Aaron Marcuse-Kubitza README.TXT: Schema changes: Split updating grap...
map 867 Bytes 1299 almost 13 years Aaron Marcuse-Kubitza map: On nimoy, use bien2_staging unless otherwi...

Latest revisions

# Date Author Comment
1937 04/21/2012 06:48 PM Aaron Marcuse-Kubitza

main Makefile: VegBIEN DB: db: Use template0 to allow encodings other than UTF-8. Because template0 doesn't have plpgsql on PostgreSQL before 9.x, add "CREATE PROCEDURAL LANGUAGE plpgsql;" manually in schemas/vegbien.sql.make, and filter it back out on PostgreSQL after 9.x using db_dump_localize.

1936 04/21/2012 06:39 PM Aaron Marcuse-Kubitza

PostgreSQL-MySQL.csv: Remove "CREATE PROCEDURAL LANGUAGE" statements

1935 04/21/2012 06:36 PM Aaron Marcuse-Kubitza

Added db_dump_localize to translate a PostgreSQL DB dump for the local server's version

1934 04/21/2012 06:32 PM Aaron Marcuse-Kubitza

Added db_dump_localize to translate a PostgreSQL DB dump for the local server's version

1933 04/21/2012 03:42 PM Aaron Marcuse-Kubitza

vegbien_dest: Added option to override the prefix of the created vars

1932 04/21/2012 03:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql.make: Fixed bug where data sources' schemas were also exported by exporting only the public schema. Note that this also removes the "CREATE OR REPLACE PROCEDURAL LANGUAGE plpgsql" statement, so that it doesn't have to be filtered out with `grep -v`.

1931 04/21/2012 03:19 PM Aaron Marcuse-Kubitza

input.Makefile: input.Makefile: Use `$(catSrcs)|` instead of $(withCatSrcs) where possible

1930 04/21/2012 03:00 PM Aaron Marcuse-Kubitza

sql.py: pkey(): Fixed bug where results were not being cached because the rows hadn't been explicitly fetched, by having DbConn.DbCursor.execute() fetch all rows if the rowcount is 0 and it's not an insert statement. DbConn.DbCursor: Made _is_insert an attribute rather than a method, which is set as soon as the query is known. Added consume_rows(). Moved Result retrieval section above Database connections because it's used by DbConn.

1929 04/21/2012 02:28 PM Aaron Marcuse-Kubitza

sql.py: pkey(): Fixed bug where queries were not being cached. Use select() instead of run_query() so that caching is automatically turned on and table names are automatically escaped.

1928 04/21/2012 01:37 PM Aaron Marcuse-Kubitza

streams.py: Added LineCountInputStream, which is faster than LineCountStream for input streams. Added InputStreamsOnlyException and raise it in all *InputStream classes' write() methods.

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