Revision 2013
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/SALVIAS-CSV/test/VegBIEN.plots.xml.ref | ||
|---|---|---|
| 33 | 33 |
</location> |
| 34 | 34 |
</location_id> |
| 35 | 35 |
<method_id><method><name>1 ha, stems >= 10 cm dbh</name></method></method_id> |
| 36 |
<obsstartdate>1990-11-16</obsstartdate> |
|
| 36 | 37 |
<project_id> |
| 37 | 38 |
<project> |
| 38 | 39 |
<datasource_id><party><organizationname>SALVIAS-CSV</organizationname></party></datasource_id> |
| 39 | 40 |
<projectname>RAINFOR - 1 ha Peru</projectname> |
| 40 | 41 |
</project> |
| 41 | 42 |
</project_id> |
| 42 |
<obsstartdate>1990-11-16</obsstartdate> |
|
| 43 | 43 |
<datasource_id><party><organizationname>SALVIAS-CSV</organizationname></party></datasource_id> |
| 44 | 44 |
<authorlocationcode>ALP-11</authorlocationcode> |
| 45 | 45 |
<sourceaccessioncode>26102</sourceaccessioncode> |
| ... | ... | |
| 77 | 77 |
</location> |
| 78 | 78 |
</location_id> |
| 79 | 79 |
<method_id><method><name>1 ha, stems >= 10 cm dbh</name></method></method_id> |
| 80 |
<obsstartdate>1990-11-16</obsstartdate> |
|
| 80 | 81 |
<project_id> |
| 81 | 82 |
<project> |
| 82 | 83 |
<datasource_id><party><organizationname>SALVIAS-CSV</organizationname></party></datasource_id> |
| 83 | 84 |
<projectname>RAINFOR - 1 ha Peru</projectname> |
| 84 | 85 |
</project> |
| 85 | 86 |
</project_id> |
| 86 |
<obsstartdate>1990-11-16</obsstartdate> |
|
| 87 | 87 |
<datasource_id><party><organizationname>SALVIAS-CSV</organizationname></party></datasource_id> |
| 88 | 88 |
<authorlocationcode>ALP-12</authorlocationcode> |
| 89 | 89 |
<sourceaccessioncode>26103</sourceaccessioncode> |
| inputs/SALVIAS-CSV/maps/VegBIEN.plots.csv | ||
|---|---|---|
| 12 | 12 |
elev_min_m,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
|
| 13 | 13 |
lat_decimal,"/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 14 | 14 |
long_decimal,"/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 15 |
plot_methodology,/*_id/method/name, |
|
| 16 |
project,/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 17 |
holdridge_life_zone,/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 18 |
life_zone_code,/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 15 |
holdridge_life_zone,"/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 16 |
life_zone_code,"/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 17 |
plot_methodology,/method_id/_collapse:[require=name]/value/method/name, |
|
| 19 | 18 |
date_finish,/obsenddate/_*/date, |
| 20 | 19 |
date_start,/obsstartdate/_*/date, |
| 21 | 20 |
precip_mm,/precipitation, |
| 21 |
project,/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 22 | 22 |
soil_acidity,"/soilobs/acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value", |
| 23 | 23 |
soil_base,"/soilobs/basesaturation/_units:[default=""%"",to=]/value", |
| 24 | 24 |
soil_Ca,"/soilobs/calcium/_units:[default=""%"",to=]/value", |
| inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 26 | 26 |
height_m,/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 27 | 27 |
stem_height_m,/overallheight,"Brad: Same as for height, but applies to individuals stems, not trees. Rare." |
| 28 | 28 |
OBSERVATION_ID,/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 29 |
tag1,"/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag/_alt/1","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
|
|
| 30 |
stem_tag1,"/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag/_alt/2","Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems.; Quotes sort it before tag2"
|
|
| 31 |
tag2,/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
|
|
| 32 |
stem_tag2,/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag/_alt/2,Brad: see above
|
|
| 29 |
tag1,"/stemobservation/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag/_alt/1","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
|
|
| 30 |
stem_tag1,"/stemobservation/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag/_alt/2","Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems.; Quotes sort it before tag2"
|
|
| 31 |
tag2,/stemobservation/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
|
|
| 32 |
stem_tag2,/stemobservation/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag/_alt/2,Brad: see above
|
|
| 33 | 33 |
x_position,/stemobservation/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
| 34 | 34 |
y_position,/stemobservation/yposition,Brad: See comment above for x_position |
| 35 | 35 |
basal_diam,,** No join mapping for /diameterBaseDistance[baseDistance/value=0]/diameter ** |
| inputs/CTFS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 15 | 15 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
|
| 16 | 16 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 17 | 17 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 18 |
/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/method/name, |
|
| 19 |
/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 20 |
/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 21 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 22 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 18 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 19 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 20 |
/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/method_id/_collapse:[require=name]/value/method/name, |
|
| 23 | 21 |
/*ID->/*s/plotObservation/obsEndDate,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/obsenddate, |
| 24 | 22 |
/*ID->/*s/plotObservation/obsStartDate,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/obsstartdate, |
| 25 | 23 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent/authorlocationcode, |
| 26 | 24 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 27 | 25 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 28 | 26 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/precipitation, |
| 27 |
/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 28 |
/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 29 | 29 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/acidity, |
| 30 | 30 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/basesaturation, |
| 31 | 31 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/calcium, |
| ... | ... | |
| 44 | 44 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/sodium, |
| 45 | 45 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/texture, |
| 46 | 46 |
/*ID->/*s/plotObservation/temperature,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/temperature, |
| 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max/_units:[default=m,to=m,to=]/value", |
|
| 48 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min/_units:[default=m,to=m,to=]/value", |
|
| 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",
|
|
| 48 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",
|
|
| 49 | 49 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 50 | 50 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 51 | 51 |
/*ID->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| ... | ... | |
| 87 | 87 |
/height,/overallheight, |
| 88 | 88 |
/simpleUserdefined[name=height]/value,/overallheight, |
| 89 | 89 |
:[*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/sourceaccessioncode, |
| 90 |
/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
|
|
| 91 |
/*ID->/*s/individualOrganism/identificationLabel[@id=2],/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
|
|
| 90 |
/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/stemobservation/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag",Quotes sort it before tag2
|
|
| 91 |
/*ID->/*s/individualOrganism/identificationLabel[@id=2],/stemobservation/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag,
|
|
| 92 | 92 |
/relativePlotPosition/relativeX,/stemobservation/xposition, |
| 93 | 93 |
/relativePlotPosition/relativeY,/stemobservation/yposition, |
| 94 | 94 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,,** No input mapping for /*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID ** |
| inputs/SALVIAS/test/VegBIEN.plots.xml.ref | ||
|---|---|---|
| 25 | 25 |
<centerlongitude>-78.3667</centerlongitude> |
| 26 | 26 |
</location> |
| 27 | 27 |
</location_id> |
| 28 |
<method_id><method><name>0.1 ha transect, stems >= 2.5 cm dbh</name></method></method_id> |
|
| 29 |
<project_id> |
|
| 30 |
<project> |
|
| 31 |
<datasource_id><party><organizationname>SALVIAS</organizationname></party></datasource_id> |
|
| 32 |
<projectname>1</projectname> |
|
| 33 |
</project> |
|
| 34 |
</project_id> |
|
| 35 | 28 |
<commclass> |
| 36 | 29 |
<commdetermination> |
| 37 | 30 |
<commconcept_id> |
| ... | ... | |
| 42 | 35 |
</commconcept_id> |
| 43 | 36 |
</commdetermination> |
| 44 | 37 |
</commclass> |
| 38 |
<method_id><method><name>0.1 ha transect, stems >= 2.5 cm dbh</name></method></method_id> |
|
| 45 | 39 |
<precipitation>2500.0</precipitation> |
| 40 |
<project_id> |
|
| 41 |
<project> |
|
| 42 |
<datasource_id><party><organizationname>SALVIAS</organizationname></party></datasource_id> |
|
| 43 |
<projectname>1</projectname> |
|
| 44 |
</project> |
|
| 45 |
</project_id> |
|
| 46 | 46 |
<datasource_id><party><organizationname>SALVIAS</organizationname></party></datasource_id> |
| 47 | 47 |
<authorlocationcode>ACHUPALL</authorlocationcode> |
| 48 | 48 |
<sourceaccessioncode>1</sourceaccessioncode> |
| ... | ... | |
| 72 | 72 |
<centerlongitude>11.5</centerlongitude> |
| 73 | 73 |
</location> |
| 74 | 74 |
</location_id> |
| 75 |
<method_id><method><name>0.1 ha transect, stems >= 2.5 cm dbh</name></method></method_id> |
|
| 76 |
<project_id> |
|
| 77 |
<project> |
|
| 78 |
<datasource_id><party><organizationname>SALVIAS</organizationname></party></datasource_id> |
|
| 79 |
<projectname>1</projectname> |
|
| 80 |
</project> |
|
| 81 |
</project_id> |
|
| 82 | 75 |
<commclass> |
| 83 | 76 |
<commdetermination> |
| 84 | 77 |
<commconcept_id> |
| ... | ... | |
| 89 | 82 |
</commconcept_id> |
| 90 | 83 |
</commdetermination> |
| 91 | 84 |
</commclass> |
| 85 |
<method_id><method><name>0.1 ha transect, stems >= 2.5 cm dbh</name></method></method_id> |
|
| 92 | 86 |
<precipitation>866.0</precipitation> |
| 87 |
<project_id> |
|
| 88 |
<project> |
|
| 89 |
<datasource_id><party><organizationname>SALVIAS</organizationname></party></datasource_id> |
|
| 90 |
<projectname>1</projectname> |
|
| 91 |
</project> |
|
| 92 |
</project_id> |
|
| 93 | 93 |
<temperature>7.4</temperature> |
| 94 | 94 |
<datasource_id><party><organizationname>SALVIAS</organizationname></party></datasource_id> |
| 95 | 95 |
<authorlocationcode>ALLACHER</authorlocationcode> |
| inputs/SALVIAS/maps/VegBIEN.stems.csv | ||
|---|---|---|
| 1 | 1 |
SALVIAS:stems,VegBIEN:/stemobservation,Comments |
| 2 | 2 |
PlotObsID,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/_if:[cond/_eq:[left=$../../../_ignore/voucherType,right=direct]]/{then/specimenreplicate,else/voucher/*_id/specimenreplicate:[*_id/taxonoccurrence]}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc",
|
| 3 | 3 |
NoInd,/*_id/plantobservation/stemcount, |
| 4 |
stem_tag1,"/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag",Quotes sort it before tag2 |
|
| 5 |
stem_tag2,/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag, |
|
| 4 | 6 |
basal_diam,/basaldiameter, |
| 5 | 7 |
stem_canopy_form,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
| 6 | 8 |
stem_canopy_position,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
| ... | ... | |
| 10 | 12 |
stem_dbh,/diameterbreastheight, |
| 11 | 13 |
stem_height_m,/height, |
| 12 | 14 |
stem_height_first_branch_m,/heightfirstbranch, |
| 13 |
stem_tag1,"/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
|
| 14 |
stem_tag2,/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
|
| 15 | 15 |
origrecord_id_stems,,** No input mapping for origrecord_id_stems ** |
| 16 | 16 |
stem_id,,** No input mapping for stem_id ** |
| 17 | 17 |
tmp_del,,** No input mapping for tmp_del ** |
| inputs/SALVIAS/maps/VegBIEN.plots.csv | ||
|---|---|---|
| 12 | 12 |
elev_min_m,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
|
| 13 | 13 |
LatDec,"/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 14 | 14 |
LongDec,"/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 15 |
PlotMethod,/*_id/method/name, |
|
| 16 |
project_id,/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 17 |
life_zone_code,/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 18 |
life_zone,/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 15 |
life_zone_code,"/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 16 |
life_zone,"/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 17 |
PlotMethod,/method_id/_collapse:[require=name]/value/method/name, |
|
| 19 | 18 |
date_finish,/obsenddate/_*/date, |
| 20 | 19 |
date_start,/obsstartdate/_*/date, |
| 21 | 20 |
Precip,/precipitation, |
| 21 |
project_id,/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 22 | 22 |
soil_acidity,"/soilobs/acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value", |
| 23 | 23 |
soil_base,"/soilobs/basesaturation/_units:[default=""%"",to=]/value", |
| 24 | 24 |
soil_Ca,"/soilobs/calcium/_units:[default=""%"",to=]/value", |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 26 | 26 |
Ind,/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| 27 | 27 |
height_m,/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 28 | 28 |
PlotObsID,/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 29 |
tag1,"/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
|
|
| 30 |
tag2,/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
|
|
| 29 |
tag1,"/stemobservation/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
|
|
| 30 |
tag2,/stemobservation/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
|
|
| 31 | 31 |
x_position,/stemobservation/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
| 32 | 32 |
y_position,/stemobservation/yposition,Brad: See comment above for x_position |
| 33 | 33 |
GenAuth,,** No input mapping for GenAuth ** |
| mappings/VegX-VegBIEN.plots.csv | ||
|---|---|---|
| 14 | 14 |
/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
|
| 15 | 15 |
/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude,"/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 16 | 16 |
/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude,"/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 17 |
/simpleUserdefined[name=method]/*ID/method/name,/*_id/method/name, |
|
| 18 |
/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 19 |
/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 20 |
->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 21 |
->/*s/communityDetermination[*ID]/*s/communityConcept/name,/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 17 |
->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,"/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 18 |
->/*s/communityDetermination[*ID]/*s/communityConcept/name,"/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 19 |
/simpleUserdefined[name=method]/*ID/method/name,/method_id/_collapse:[require=name]/value/method/name, |
|
| 22 | 20 |
/obsEndDate,/obsenddate, |
| 23 | 21 |
/obsStartDate,/obsstartdate, |
| 24 | 22 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,/parent_id/locationevent/authorlocationcode, |
| 25 | 23 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 26 | 24 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 27 | 25 |
/simpleUserdefined[name=precipitation]/value,/precipitation, |
| 26 |
/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 27 |
/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 28 | 28 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,/soilobs/acidity, |
| 29 | 29 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,/soilobs/basesaturation, |
| 30 | 30 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,/soilobs/calcium, |
| ... | ... | |
| 43 | 43 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,/soilobs/sodium, |
| 44 | 44 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/soilobs/texture, |
| 45 | 45 |
/temperature,/temperature, |
| 46 |
/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/waterdepth/max/_units:[default=m,to=m,to=]/value", |
|
| 47 |
/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/waterdepth/min/_units:[default=m,to=m,to=]/value", |
|
| 46 |
/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",
|
|
| 47 |
/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",
|
|
| 48 | 48 |
:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 49 | 49 |
/partyWithRole/*ID->/parties/party/organizationName,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 50 | 50 |
:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| mappings/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 15 | 15 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
|
| 16 | 16 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 17 | 17 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 18 |
/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/method/name, |
|
| 19 |
/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 20 |
/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 21 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 22 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 18 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 19 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 20 |
/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/method_id/_collapse:[require=name]/value/method/name, |
|
| 23 | 21 |
/*ID->/*s/plotObservation/obsEndDate,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/obsenddate, |
| 24 | 22 |
/*ID->/*s/plotObservation/obsStartDate,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/obsstartdate, |
| 25 | 23 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent/authorlocationcode, |
| 26 | 24 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 27 | 25 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 28 | 26 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/precipitation, |
| 27 |
/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 28 |
/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 29 | 29 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/acidity, |
| 30 | 30 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/basesaturation, |
| 31 | 31 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/calcium, |
| ... | ... | |
| 44 | 44 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/sodium, |
| 45 | 45 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/texture, |
| 46 | 46 |
/*ID->/*s/plotObservation/temperature,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/temperature, |
| 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max/_units:[default=m,to=m,to=]/value", |
|
| 48 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min/_units:[default=m,to=m,to=]/value", |
|
| 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",
|
|
| 48 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",
|
|
| 49 | 49 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 50 | 50 |
/*ID->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 51 | 51 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| ... | ... | |
| 81 | 81 |
/height,/overallheight, |
| 82 | 82 |
/simpleUserdefined[name=height]/value,/overallheight, |
| 83 | 83 |
:[*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/sourceaccessioncode, |
| 84 |
/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
|
|
| 85 |
/*ID->/*s/individualOrganism/identificationLabel[@id=2],/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
|
|
| 84 |
/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/stemobservation/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag",Quotes sort it before tag2
|
|
| 85 |
/*ID->/*s/individualOrganism/identificationLabel[@id=2],/stemobservation/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag,
|
|
| 86 | 86 |
/relativePlotPosition/relativeX,/stemobservation/xposition, |
| 87 | 87 |
/relativePlotPosition/relativeY,/stemobservation/yposition, |
| mappings/for_review/VegX-VegBIEN.plots.csv | ||
|---|---|---|
| 14 | 14 |
//geospatial/minimumElevationInMeters,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value",
|
| 15 | 15 |
//geospatial/DecimalLatitude,"/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 16 | 16 |
//geospatial/DecimalLongitude,"/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 17 |
/simpleUserdefined[name=method]/*ID/method/name,//method/name, |
|
| 18 |
//project/personnel[role=metadataProvider]/organizationName,//party/organizationname/_alt/1, |
|
| 19 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//project/projectname, |
|
| 20 |
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname, |
|
| 21 |
//*s/communityDetermination/*s/communityConcept/name,//commconcept/commdescription, |
|
| 17 |
//*s/communityDetermination/*s/communityConcept/commonName,/_collapse/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 18 |
//*s/communityDetermination/*s/communityConcept/name,/_collapse/value/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 19 |
/simpleUserdefined[name=method]/*ID/method/name,/method_id/_collapse/value/method/name, |
|
| 22 | 20 |
/obsEndDate,/obsenddate, |
| 23 | 21 |
/obsStartDate,/obsstartdate, |
| 24 | 22 |
//plot/plotName,//locationevent/authorlocationcode, |
| 25 | 23 |
//party/organizationName,//party/organizationname/_alt/1, |
| 26 | 24 |
//plot/plotUniqueIdentifier,//locationevent/sourceaccessioncode, |
| 27 | 25 |
/simpleUserdefined[name=precipitation]/value,/precipitation, |
| 26 |
//project/personnel[role=metadataProvider]/organizationName,/project_id/_collapse/value/project/datasource_id/party/organizationname/_alt/1, |
|
| 27 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/project_id/_collapse/value/project/projectname, |
|
| 28 | 28 |
//*s/abioticObservation/simpleUserdefined[name=acidity]/value,//soilobs/acidity, |
| 29 | 29 |
//*s/abioticObservation/simpleUserdefined[name=base]/value,//soilobs/basesaturation, |
| 30 | 30 |
//*s/abioticObservation/simpleUserdefined[name=calcium]/value,//soilobs/calcium, |
| ... | ... | |
| 43 | 43 |
//*s/abioticObservation/simpleUserdefined[name=sodium]/value,//soilobs/sodium, |
| 44 | 44 |
//*s/abioticObservation/simpleUserdefined[name=texture]/value,//soilobs/texture, |
| 45 | 45 |
/temperature,/temperature, |
| 46 |
//geospatial/maximumDepthInMeters,//waterdepth/max/_units/value,
|
|
| 47 |
//geospatial/minimumDepthInMeters,//waterdepth/min/_units/value,
|
|
| 46 |
//geospatial/maximumDepthInMeters,/waterdepth/_avg/max/_units/value,
|
|
| 47 |
//geospatial/minimumDepthInMeters,/waterdepth/_avg/min/_units/value,
|
|
| 48 | 48 |
//plot/plotName,/authorlocationcode, |
| 49 | 49 |
//party/organizationName,//party/organizationname/_alt/1, |
| 50 | 50 |
//plot/plotUniqueIdentifier,/sourceaccessioncode, |
| mappings/for_review/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 15 | 15 |
//geospatial/minimumElevationInMeters,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value",
|
| 16 | 16 |
//geospatial/DecimalLatitude,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 17 | 17 |
//geospatial/DecimalLongitude,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 18 |
//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//method/name, |
|
| 19 |
//project/personnel[role=metadataProvider]/organizationName,//party/organizationname/_alt/1, |
|
| 20 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//project/projectname, |
|
| 21 |
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname, |
|
| 22 |
//*s/communityDetermination/*s/communityConcept/name,//commconcept/commdescription, |
|
| 18 |
//*s/communityDetermination/*s/communityConcept/commonName,//*_id/locationevent/_collapse/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 19 |
//*s/communityDetermination/*s/communityConcept/name,//*_id/locationevent/_collapse/value/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 20 |
//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//locationevent/method_id/_collapse/value/method/name, |
|
| 23 | 21 |
//plotObservation/obsEndDate,//locationevent/obsenddate, |
| 24 | 22 |
//plotObservation/obsStartDate,//locationevent/obsstartdate, |
| 25 | 23 |
//plot/plotName,//locationevent/authorlocationcode, |
| 26 | 24 |
//party/organizationName,//party/organizationname/_alt/1, |
| 27 | 25 |
//plot/plotUniqueIdentifier,//locationevent/sourceaccessioncode, |
| 28 | 26 |
//plotObservation/simpleUserdefined[name=precipitation]/value,//locationevent/precipitation, |
| 27 |
//project/personnel[role=metadataProvider]/organizationName,//locationevent/project_id/_collapse/value/project/datasource_id/party/organizationname/_alt/1, |
|
| 28 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//locationevent/project_id/_collapse/value/project/projectname, |
|
| 29 | 29 |
//*s/abioticObservation/simpleUserdefined[name=acidity]/value,//soilobs/acidity, |
| 30 | 30 |
//*s/abioticObservation/simpleUserdefined[name=base]/value,//soilobs/basesaturation, |
| 31 | 31 |
//*s/abioticObservation/simpleUserdefined[name=calcium]/value,//soilobs/calcium, |
| ... | ... | |
| 44 | 44 |
//*s/abioticObservation/simpleUserdefined[name=sodium]/value,//soilobs/sodium, |
| 45 | 45 |
//*s/abioticObservation/simpleUserdefined[name=texture]/value,//soilobs/texture, |
| 46 | 46 |
//plotObservation/temperature,//locationevent/temperature, |
| 47 |
//geospatial/maximumDepthInMeters,//waterdepth/max/_units/value,
|
|
| 48 |
//geospatial/minimumDepthInMeters,//waterdepth/min/_units/value,
|
|
| 47 |
//geospatial/maximumDepthInMeters,//locationevent/waterdepth/_avg/max/_units/value,
|
|
| 48 |
//geospatial/minimumDepthInMeters,//locationevent/waterdepth/_avg/min/_units/value,
|
|
| 49 | 49 |
//plot/plotName,//locationevent/authorlocationcode, |
| 50 | 50 |
//party/organizationName,//party/organizationname/_alt/1, |
| 51 | 51 |
//plot/plotUniqueIdentifier,//locationevent/sourceaccessioncode, |
| ... | ... | |
| 81 | 81 |
/height,/overallheight, |
| 82 | 82 |
/simpleUserdefined[name=height]/value,/overallheight, |
| 83 | 83 |
/simpleUserdefined[name=sourceAccessionCode]/value,/sourceaccessioncode, |
| 84 |
//individualOrganism/identificationLabel[@id=1],"//stemobservation/stemtag[""""/2=true]/tag",Quotes sort it before tag2
|
|
| 85 |
//individualOrganism/identificationLabel[@id=2],//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
|
|
| 84 |
//individualOrganism/identificationLabel[@id=1],"/stemobservation/_collapse/value/stemtag[""""/2=true]/tag",Quotes sort it before tag2
|
|
| 85 |
//individualOrganism/identificationLabel[@id=2],/stemobservation/_collapse/value/stemtag[iscurrent=true]:[../../../_collapse?/value/stemtag[2=true]/1=false]/tag,
|
|
| 86 | 86 |
//relativePlotPosition/relativeX,//stemobservation/xposition, |
| 87 | 87 |
//relativePlotPosition/relativeY,//stemobservation/yposition, |
| mappings/for_review/VegX-VegBIEN.stems.csv | ||
|---|---|---|
| 15 | 15 |
//geospatial/minimumElevationInMeters,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value",
|
| 16 | 16 |
//geospatial/DecimalLatitude,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 17 | 17 |
//geospatial/DecimalLongitude,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 18 |
//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//method/name, |
|
| 19 |
//project/personnel[role=metadataProvider]/organizationName,//party/organizationname/_alt/1, |
|
| 20 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//project/projectname, |
|
| 21 |
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname, |
|
| 22 |
//*s/communityDetermination/*s/communityConcept/name,//commconcept/commdescription, |
|
| 18 |
//*s/communityDetermination/*s/communityConcept/commonName,//*_id/locationevent/_collapse/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 19 |
//*s/communityDetermination/*s/communityConcept/name,//*_id/locationevent/_collapse/value/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 20 |
//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//locationevent/method_id/_collapse/value/method/name, |
|
| 23 | 21 |
//plotObservation/obsEndDate,//locationevent/obsenddate, |
| 24 | 22 |
//plotObservation/obsStartDate,//locationevent/obsstartdate, |
| 25 | 23 |
//plot/plotName,//locationevent/authorlocationcode, |
| 26 | 24 |
//party/organizationName,//party/organizationname/_alt/1, |
| 27 | 25 |
//plot/plotUniqueIdentifier,//locationevent/sourceaccessioncode, |
| 28 | 26 |
//plotObservation/simpleUserdefined[name=precipitation]/value,//locationevent/precipitation, |
| 27 |
//project/personnel[role=metadataProvider]/organizationName,//locationevent/project_id/_collapse/value/project/datasource_id/party/organizationname/_alt/1, |
|
| 28 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//locationevent/project_id/_collapse/value/project/projectname, |
|
| 29 | 29 |
//*s/abioticObservation/simpleUserdefined[name=acidity]/value,//soilobs/acidity, |
| 30 | 30 |
//*s/abioticObservation/simpleUserdefined[name=base]/value,//soilobs/basesaturation, |
| 31 | 31 |
//*s/abioticObservation/simpleUserdefined[name=calcium]/value,//soilobs/calcium, |
| ... | ... | |
| 44 | 44 |
//*s/abioticObservation/simpleUserdefined[name=sodium]/value,//soilobs/sodium, |
| 45 | 45 |
//*s/abioticObservation/simpleUserdefined[name=texture]/value,//soilobs/texture, |
| 46 | 46 |
//plotObservation/temperature,//locationevent/temperature, |
| 47 |
//geospatial/maximumDepthInMeters,//waterdepth/max/_units/value,
|
|
| 48 |
//geospatial/minimumDepthInMeters,//waterdepth/min/_units/value,
|
|
| 47 |
//geospatial/maximumDepthInMeters,//locationevent/waterdepth/_avg/max/_units/value,
|
|
| 48 |
//geospatial/minimumDepthInMeters,//locationevent/waterdepth/_avg/min/_units/value,
|
|
| 49 | 49 |
//plot/plotName,//locationevent/authorlocationcode, |
| 50 | 50 |
//party/organizationName,//party/organizationname/_alt/1, |
| 51 | 51 |
//plot/plotUniqueIdentifier,//locationevent/sourceaccessioncode, |
| ... | ... | |
| 82 | 82 |
//individualOrganismObservation/simpleUserdefined[name=height]/value,//plantobservation/overallheight, |
| 83 | 83 |
//individualOrganismObservation/simpleUserdefined[name=sourceAccessionCode]/value,//plantobservation/sourceaccessioncode, |
| 84 | 84 |
//*s/aggregateOrganismObservation/*/aggregateValue/value,//plantobservation/stemcount, |
| 85 |
//individualOrganism/identificationLabel[@id=1],"//stemobservation/stemtag[""""/2=true]/tag",Quotes sort it before tag2
|
|
| 86 |
//individualOrganism/identificationLabel[@id=2],//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag,
|
|
| 85 |
//individualOrganism/identificationLabel[@id=1],"//plantobservation/stemobservation/_collapse/value/stemtag[""""/2=true]/tag",Quotes sort it before tag2
|
|
| 86 |
//individualOrganism/identificationLabel[@id=2],//plantobservation/stemobservation/_collapse/value/stemtag[iscurrent=true]:[../../../_collapse?/value/stemtag[2=true]/1=false]/tag,
|
|
| 87 | 87 |
//relativePlotPosition/relativeX,//stemobservation/xposition, |
| 88 | 88 |
//relativePlotPosition/relativeY,//stemobservation/yposition, |
| 89 |
//individualOrganism/identificationLabel[@id=1],"/_collapse/value/stemtag[""""/2=true]/tag",Quotes sort it before tag2 |
|
| 90 |
//individualOrganism/identificationLabel[@id=2],/_collapse/value/stemtag[iscurrent=true]:[../../../_collapse?/value/stemtag[2=true]/1=false]/tag, |
|
| 89 | 91 |
/diameterBaseDistance[value=0]/diameter,/basaldiameter, |
| 90 | 92 |
/simpleUserdefined[name=canopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue", |
| 91 | 93 |
/simpleUserdefined[name=canopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue", |
| ... | ... | |
| 95 | 97 |
/diameterBaseDistance[baseDistance[]/value=1.37]/diameter,/diameterbreastheight, |
| 96 | 98 |
/simpleUserdefined[name=height]/value,/height, |
| 97 | 99 |
/simpleUserdefined[name=heightFirstBranch]/value,/heightfirstbranch, |
| 98 |
//individualOrganism/identificationLabel[@id=1],"/stemtag[""""/2=true]/tag",Quotes sort it before tag2 |
|
| 99 |
//individualOrganism/identificationLabel[@id=2],/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag, |
|
| 100 | 100 |
//relativePlotPosition/relativeX,/xposition, |
| 101 | 101 |
//relativePlotPosition/relativeY,/yposition, |
| mappings/VegX-VegBIEN.stems.csv | ||
|---|---|---|
| 15 | 15 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
|
| 16 | 16 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
|
| 17 | 17 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
|
| 18 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/method/name, |
|
| 19 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 20 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 21 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 22 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 18 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 19 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/_collapse:[require=""commdetermination/*_id/commconcept/*_id/*/commname""]/value/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 20 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/method_id/_collapse:[require=name]/value/method/name, |
|
| 23 | 21 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsEndDate,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/obsenddate, |
| 24 | 22 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/obsStartDate,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/obsstartdate, |
| 25 | 23 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent/authorlocationcode, |
| 26 | 24 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 27 | 25 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 28 | 26 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/precipitation, |
| 27 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
|
| 28 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/project_id/_collapse:[require=projectname]/value/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
|
| 29 | 29 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/acidity, |
| 30 | 30 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/basesaturation, |
| 31 | 31 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/calcium, |
| ... | ... | |
| 44 | 44 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/sodium, |
| 45 | 45 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/soilobs/texture, |
| 46 | 46 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/temperature,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/temperature, |
| 47 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max/_units:[default=m,to=m,to=]/value", |
|
| 48 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min/_units:[default=m,to=m,to=]/value", |
|
| 47 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",
|
|
| 48 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",
|
|
| 49 | 49 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 50 | 50 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 51 | 51 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| ... | ... | |
| 82 | 82 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/simpleUserdefined[name=height]/value,/*_id/plantobservation/overallheight, |
| 83 | 83 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation:[*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,/*_id/plantobservation/sourceaccessioncode, |
| 84 | 84 |
/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,/*_id/plantobservation/stemcount, |
| 85 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
|
|
| 86 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel[@id=2],/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
|
|
| 85 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/*_id/plantobservation/stemobservation/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag",Quotes sort it before tag2
|
|
| 86 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/identificationLabel[@id=2],/*_id/plantobservation/stemobservation/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag,
|
|
| 87 | 87 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/relativePlotPosition/relativeX,/*_id/plantobservation/stemobservation/xposition, |
| 88 | 88 |
/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation/relativePlotPosition/relativeY,/*_id/plantobservation/stemobservation/yposition, |
| 89 |
/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/_collapse:[require=tag](/value/stemtag[""""/iscurrent/_alt/2=true])/tag",Quotes sort it before tag2 |
|
| 90 |
/*ID->/*s/individualOrganism/identificationLabel[@id=2],/_collapse:[require=tag](/value/stemtag[iscurrent=true]:[../../../_collapse?(/value/stemtag[iscurrent/_alt/2=true])/iscurrent/_alt/1=false])/tag, |
|
| 89 | 91 |
/diameterBaseDistance[baseDistance/value=0]/diameter,/basaldiameter, |
| 90 | 92 |
/simpleUserdefined[name=canopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
| 91 | 93 |
/simpleUserdefined[name=canopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
| ... | ... | |
| 95 | 97 |
/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/diameterbreastheight, |
| 96 | 98 |
/simpleUserdefined[name=height]/value,/height, |
| 97 | 99 |
/simpleUserdefined[name=heightFirstBranch]/value,/heightfirstbranch, |
| 98 |
/*ID->/*s/individualOrganism/identificationLabel[@id=1],"/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
|
| 99 |
/*ID->/*s/individualOrganism/identificationLabel[@id=2],/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
|
| 100 | 100 |
/relativePlotPosition/relativeX,/xposition, |
| 101 | 101 |
/relativePlotPosition/relativeY,/yposition, |
Also available in: Unified diff
mappings/VegX-VegBIEN.stems.csv: Added _collapse around subtrees that need to be removed if they are created around a NULL value