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1
# Database access
2

    
3
import copy
4
import re
5
import warnings
6

    
7
import exc
8
import dicts
9
import iters
10
import lists
11
from Proxy import Proxy
12
import rand
13
import strings
14
import util
15

    
16
##### Exceptions
17

    
18
def get_cur_query(cur):
19
    if hasattr(cur, 'query'): return cur.query
20
    elif hasattr(cur, '_last_executed'): return cur._last_executed
21
    else: return None
22

    
23
def _add_cursor_info(e, cur): exc.add_msg(e, 'query: '+get_cur_query(cur))
24

    
25
class DbException(exc.ExceptionWithCause):
26
    def __init__(self, msg, cause=None, cur=None):
27
        exc.ExceptionWithCause.__init__(self, msg, cause)
28
        if cur != None: _add_cursor_info(self, cur)
29

    
30
class NameException(DbException): pass
31

    
32
class ExceptionWithColumns(DbException):
33
    def __init__(self, cols, cause=None):
34
        DbException.__init__(self, 'columns: ' + ', '.join(cols), cause)
35
        self.cols = cols
36

    
37
class DuplicateKeyException(ExceptionWithColumns): pass
38

    
39
class NullValueException(ExceptionWithColumns): pass
40

    
41
class EmptyRowException(DbException): pass
42

    
43
##### Warnings
44

    
45
class DbWarning(UserWarning): pass
46

    
47
##### Result retrieval
48

    
49
def col_names(cur): return (col[0] for col in cur.description)
50

    
51
def rows(cur): return iter(lambda: cur.fetchone(), None)
52

    
53
def consume_rows(cur):
54
    '''Used to fetch all rows so result will be cached'''
55
    iters.consume_iter(rows(cur))
56

    
57
def next_row(cur): return rows(cur).next()
58

    
59
def row(cur):
60
    row_ = next_row(cur)
61
    consume_rows(cur)
62
    return row_
63

    
64
def next_value(cur): return next_row(cur)[0]
65

    
66
def value(cur): return row(cur)[0]
67

    
68
def values(cur): return iters.func_iter(lambda: next_value(cur))
69

    
70
def value_or_none(cur):
71
    try: return value(cur)
72
    except StopIteration: return None
73

    
74
##### Database connections
75

    
76
db_config_names = ['engine', 'host', 'user', 'password', 'database']
77

    
78
db_engines = {
79
    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
80
    'PostgreSQL': ('psycopg2', {}),
81
}
82

    
83
DatabaseErrors_set = set([DbException])
84
DatabaseErrors = tuple(DatabaseErrors_set)
85

    
86
def _add_module(module):
87
    DatabaseErrors_set.add(module.DatabaseError)
88
    global DatabaseErrors
89
    DatabaseErrors = tuple(DatabaseErrors_set)
90

    
91
def db_config_str(db_config):
92
    return db_config['engine']+' database '+db_config['database']
93

    
94
def _query_lookup(query, params): return (query, dicts.make_hashable(params))
95

    
96
log_debug_none = lambda msg: None
97

    
98
class DbConn:
99
    def __init__(self, db_config, serializable=True, log_debug=log_debug_none,
100
        caching=True):
101
        self.db_config = db_config
102
        self.serializable = serializable
103
        self.log_debug = log_debug
104
        self.caching = caching
105
        
106
        self.__db = None
107
        self.query_results = {}
108
    
109
    def __getattr__(self, name):
110
        if name == '__dict__': raise Exception('getting __dict__')
111
        if name == 'db': return self._db()
112
        else: raise AttributeError()
113
    
114
    def __getstate__(self):
115
        state = copy.copy(self.__dict__) # shallow copy
116
        state['log_debug'] = None # don't pickle the debug callback
117
        state['_DbConn__db'] = None # don't pickle the connection
118
        return state
119
    
120
    def _db(self):
121
        if self.__db == None:
122
            # Process db_config
123
            db_config = self.db_config.copy() # don't modify input!
124
            module_name, mappings = db_engines[db_config.pop('engine')]
125
            module = __import__(module_name)
126
            _add_module(module)
127
            for orig, new in mappings.iteritems():
128
                try: util.rename_key(db_config, orig, new)
129
                except KeyError: pass
130
            
131
            # Connect
132
            self.__db = module.connect(**db_config)
133
            
134
            # Configure connection
135
            if self.serializable: run_raw_query(self,
136
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
137
        
138
        return self.__db
139
    
140
    class DbCursor(Proxy):
141
        def __init__(self, outer):
142
            Proxy.__init__(self, outer.db.cursor())
143
            self.query_results = outer.query_results
144
            self.query_lookup = None
145
            self.result = []
146
        
147
        def execute(self, query, params=None):
148
            self._is_insert = query.upper().find('INSERT') >= 0
149
            self.query_lookup = _query_lookup(query, params)
150
            try: return_value = self.inner.execute(query, params)
151
            except Exception, e:
152
                self.result = e # cache the exception as the result
153
                self._cache_result()
154
                raise
155
            finally: self.query = get_cur_query(self.inner)
156
            # Fetch all rows so result will be cached
157
            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
158
            return return_value
159
        
160
        def fetchone(self):
161
            row = self.inner.fetchone()
162
            if row != None: self.result.append(row)
163
            # otherwise, fetched all rows
164
            else: self._cache_result()
165
            return row
166
        
167
        def _cache_result(self):
168
            # For inserts, only cache exceptions since inserts are not
169
            # idempotent, but an invalid insert will always be invalid
170
            if self.query_results != None and (not self._is_insert
171
                or isinstance(self.result, Exception)):
172
                
173
                assert self.query_lookup != None
174
                self.query_results[self.query_lookup] = self.CacheCursor(
175
                    util.dict_subset(dicts.AttrsDictView(self),
176
                    ['query', 'result', 'rowcount', 'description']))
177
        
178
        class CacheCursor:
179
            def __init__(self, cached_result): self.__dict__ = cached_result
180
            
181
            def execute(self, *args, **kw_args):
182
                if isinstance(self.result, Exception): raise self.result
183
                # otherwise, result is a rows list
184
                self.iter = iter(self.result)
185
            
186
            def fetchone(self):
187
                try: return self.iter.next()
188
                except StopIteration: return None
189
    
190
    def run_query(self, query, params=None, cacheable=False):
191
        if not self.caching: cacheable = False
192
        used_cache = False
193
        try:
194
            # Get cursor
195
            if cacheable:
196
                query_lookup = _query_lookup(query, params)
197
                try:
198
                    cur = self.query_results[query_lookup]
199
                    used_cache = True
200
                except KeyError: cur = self.DbCursor(self)
201
            else: cur = self.db.cursor()
202
            
203
            # Run query
204
            try: cur.execute(query, params)
205
            except Exception, e:
206
                _add_cursor_info(e, cur)
207
                raise
208
        finally:
209
            if self.log_debug != log_debug_none: # only compute msg if needed
210
                if used_cache: cache_status = 'Cache hit'
211
                elif cacheable: cache_status = 'Cache miss'
212
                else: cache_status = 'Non-cacheable'
213
                self.log_debug(cache_status+': '
214
                    +strings.one_line(get_cur_query(cur)))
215
        
216
        return cur
217
    
218
    def is_cached(self, query, params=None):
219
        return _query_lookup(query, params) in self.query_results
220

    
221
connect = DbConn
222

    
223
##### Input validation
224

    
225
def clean_name(name): return re.sub(r'\W', r'', name)
226

    
227
def check_name(name):
228
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
229
        +'" may contain only alphanumeric characters and _')
230

    
231
def esc_name_by_module(module, name, ignore_case=False):
232
    if module == 'psycopg2':
233
        if ignore_case:
234
            # Don't enclose in quotes because this disables case-insensitivity
235
            check_name(name)
236
            return name
237
        else: quote = '"'
238
    elif module == 'MySQLdb': quote = '`'
239
    else: raise NotImplementedError("Can't escape name for "+module+' database')
240
    return quote + name.replace(quote, '') + quote
241

    
242
def esc_name_by_engine(engine, name, **kw_args):
243
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
244

    
245
def esc_name(db, name, **kw_args):
246
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
247

    
248
def qual_name(db, schema, table):
249
    def esc_name_(name): return esc_name(db, name)
250
    table = esc_name_(table)
251
    if schema != None: return esc_name_(schema)+'.'+table
252
    else: return table
253

    
254
##### Querying
255

    
256
def run_raw_query(db, *args, **kw_args):
257
    '''For params, see DbConn.run_query()'''
258
    return db.run_query(*args, **kw_args)
259

    
260
def mogrify(db, query, params):
261
    module = util.root_module(db.db)
262
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
263
    else: raise NotImplementedError("Can't mogrify query for "+module+
264
        ' database')
265

    
266
##### Recoverable querying
267

    
268
def with_savepoint(db, func):
269
    savepoint = 'savepoint_'+str(rand.rand_int()) # must be unique
270
    run_raw_query(db, 'SAVEPOINT '+savepoint)
271
    try: return_val = func()
272
    except:
273
        run_raw_query(db, 'ROLLBACK TO SAVEPOINT '+savepoint)
274
        raise
275
    else:
276
        run_raw_query(db, 'RELEASE SAVEPOINT '+savepoint)
277
        return return_val
278

    
279
def run_query(db, query, params=None, recover=None, cacheable=False):
280
    if recover == None: recover = False
281
    
282
    def run(): return run_raw_query(db, query, params, cacheable)
283
    if recover and not db.is_cached(query, params):
284
        return with_savepoint(db, run)
285
    else: return run() # don't need savepoint if cached
286

    
287
##### Basic queries
288

    
289
def run_query_into(db, query, params, into=None, *args, **kw_args):
290
    '''Outputs a query to a temp table.
291
    For params, see run_query().
292
    '''
293
    if into == None: return run_query(db, query, params, *args, **kw_args)
294
    else: # place rows in temp table
295
        check_name(into)
296
        
297
        run_query(db, 'DROP TABLE IF EXISTS '+into+' CASCADE', *args, **kw_args)
298
        return run_query(db, 'CREATE TEMP TABLE '+into+' AS '+query, params,
299
            *args, **kw_args) # CREATE TABLE sets rowcount to # rows in query
300

    
301
def mk_select(db, table, fields=None, conds=None, limit=None, start=None,
302
    table_is_esc=False):
303
    '''
304
    @param fields Use None to select all fields in the table
305
    @param table_is_esc Whether the table name has already been escaped
306
    @return tuple(query, params)
307
    '''
308
    def esc_name_(name): return esc_name(db, name)
309
    
310
    if conds == None: conds = {}
311
    assert limit == None or type(limit) == int
312
    assert start == None or type(start) == int
313
    if not table_is_esc: table = esc_name_(table)
314
    
315
    params = []
316
    
317
    def parse_col(field):
318
        '''Parses fields'''
319
        if isinstance(field, tuple): # field is literal values
320
            value, col = field
321
            sql_ = '%s'
322
            params.append(value)
323
            if col != None: sql_ += ' AS '+esc_name_(col)
324
        else: sql_ = esc_name_(field) # field is col name
325
        return sql_
326
    def cond(entry):
327
        '''Parses conditions'''
328
        col, value = entry
329
        cond_ = esc_name_(col)+' '
330
        if value == None: cond_ += 'IS'
331
        else: cond_ += '='
332
        cond_ += ' %s'
333
        return cond_
334
    
335
    query = 'SELECT '
336
    if fields == None: query += '*'
337
    else: query += ', '.join(map(parse_col, fields))
338
    query += ' FROM '+table
339
    
340
    missing = True
341
    if conds != {}:
342
        query += ' WHERE '+' AND '.join(map(cond, conds.iteritems()))
343
        params += conds.values()
344
        missing = False
345
    if limit != None: query += ' LIMIT '+str(limit); missing = False
346
    if start != None:
347
        if start != 0: query += ' OFFSET '+str(start)
348
        missing = False
349
    if missing: warnings.warn(DbWarning(
350
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
351
    
352
    return (query, params)
353

    
354
def select(db, *args, **kw_args):
355
    '''For params, see mk_select() and run_query()'''
356
    recover = kw_args.pop('recover', None)
357
    cacheable = kw_args.pop('cacheable', True)
358
    
359
    query, params = mk_select(db, *args, **kw_args)
360
    return run_query(db, query, params, recover, cacheable)
361

    
362
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
363
    returning=None, embeddable=False, table_is_esc=False):
364
    '''
365
    @param returning str|None An inserted column (such as pkey) to return
366
    @param embeddable Whether the query should be embeddable as a nested SELECT.
367
        Warning: If you set this and cacheable=True when the query is run, the
368
        query will be fully cached, not just if it raises an exception.
369
    @param table_is_esc Whether the table name has already been escaped
370
    '''
371
    if select_query == None: select_query = 'DEFAULT VALUES'
372
    if cols == []: cols = None # no cols (all defaults) = unknown col names
373
    if not table_is_esc: check_name(table)
374
    
375
    # Build query
376
    query = 'INSERT INTO '+table
377
    if cols != None:
378
        map(check_name, cols)
379
        query += ' ('+', '.join(cols)+')'
380
    query += ' '+select_query
381
    
382
    if returning != None:
383
        check_name(returning)
384
        query += ' RETURNING '+returning
385
    
386
    if embeddable:
387
        # Create function
388
        function = 'pg_temp.'+('_'.join(map(clean_name,
389
            ['insert', table] + cols)))
390
        return_type = 'SETOF '+table+'.'+returning+'%TYPE'
391
        function_query = '''\
392
CREATE OR REPLACE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
393
    LANGUAGE sql
394
    AS $$'''+mogrify(db, query, params)+''';$$;
395
'''
396
        run_query(db, function_query, cacheable=True)
397
        
398
        # Return query that uses function
399
        return mk_select(db, function+'() AS f ('+returning+')',
400
            table_is_esc=True) # function alias is required in AS clause
401
    
402
    return (query, params)
403

    
404
def insert_select(db, *args, **kw_args):
405
    '''For params, see mk_insert_select() and run_query_into()
406
    @param into Name of temp table to place RETURNING values in
407
    '''
408
    into = kw_args.pop('into', None)
409
    if into != None: kw_args['embeddable'] = True
410
    recover = kw_args.pop('recover', None)
411
    cacheable = kw_args.pop('cacheable', True)
412
    
413
    query, params = mk_insert_select(db, *args, **kw_args)
414
    return run_query_into(db, query, params, into, recover, cacheable)
415

    
416
default = object() # tells insert() to use the default value for a column
417

    
418
def insert(db, table, row, *args, **kw_args):
419
    '''For params, see insert_select()'''
420
    if lists.is_seq(row): cols = None
421
    else:
422
        cols = row.keys()
423
        row = row.values()
424
    row = list(row) # ensure that "!= []" works
425
    
426
    # Check for special values
427
    labels = []
428
    values = []
429
    for value in row:
430
        if value == default: labels.append('DEFAULT')
431
        else:
432
            labels.append('%s')
433
            values.append(value)
434
    
435
    # Build query
436
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
437
    else: query = None
438
    
439
    return insert_select(db, table, cols, query, values, *args, **kw_args)
440

    
441
def last_insert_id(db):
442
    module = util.root_module(db.db)
443
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
444
    elif module == 'MySQLdb': return db.insert_id()
445
    else: return None
446

    
447
def truncate(db, table, schema='public'):
448
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
449

    
450
##### Database structure queries
451

    
452
def pkey(db, table, recover=None, table_is_esc=False):
453
    '''Assumed to be first column in table'''
454
    return col_names(select(db, table, limit=0, recover=recover,
455
        table_is_esc=table_is_esc)).next()
456

    
457
def index_cols(db, table, index):
458
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
459
    automatically created. When you don't know whether something is a UNIQUE
460
    constraint or a UNIQUE index, use this function.'''
461
    check_name(table)
462
    check_name(index)
463
    module = util.root_module(db.db)
464
    if module == 'psycopg2':
465
        return list(values(run_query(db, '''\
466
SELECT attname
467
FROM
468
(
469
        SELECT attnum, attname
470
        FROM pg_index
471
        JOIN pg_class index ON index.oid = indexrelid
472
        JOIN pg_class table_ ON table_.oid = indrelid
473
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
474
        WHERE
475
            table_.relname = %(table)s
476
            AND index.relname = %(index)s
477
    UNION
478
        SELECT attnum, attname
479
        FROM
480
        (
481
            SELECT
482
                indrelid
483
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
484
                    AS indkey
485
            FROM pg_index
486
            JOIN pg_class index ON index.oid = indexrelid
487
            JOIN pg_class table_ ON table_.oid = indrelid
488
            WHERE
489
                table_.relname = %(table)s
490
                AND index.relname = %(index)s
491
        ) s
492
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
493
) s
494
ORDER BY attnum
495
''',
496
            {'table': table, 'index': index}, cacheable=True)))
497
    else: raise NotImplementedError("Can't list index columns for "+module+
498
        ' database')
499

    
500
def constraint_cols(db, table, constraint):
501
    check_name(table)
502
    check_name(constraint)
503
    module = util.root_module(db.db)
504
    if module == 'psycopg2':
505
        return list(values(run_query(db, '''\
506
SELECT attname
507
FROM pg_constraint
508
JOIN pg_class ON pg_class.oid = conrelid
509
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
510
WHERE
511
    relname = %(table)s
512
    AND conname = %(constraint)s
513
ORDER BY attnum
514
''',
515
            {'table': table, 'constraint': constraint})))
516
    else: raise NotImplementedError("Can't list constraint columns for "+module+
517
        ' database')
518

    
519
def add_row_num(db, table):
520
    '''Adds a row number column named `row_num` to a table'''
521
    check_name(table)
522
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN row_num serial NOT NULL')
523

    
524
def tables(db, schema='public', table_like='%'):
525
    module = util.root_module(db.db)
526
    params = {'schema': schema, 'table_like': table_like}
527
    if module == 'psycopg2':
528
        return values(run_query(db, '''\
529
SELECT tablename
530
FROM pg_tables
531
WHERE
532
    schemaname = %(schema)s
533
    AND tablename LIKE %(table_like)s
534
ORDER BY tablename
535
''',
536
            params, cacheable=True))
537
    elif module == 'MySQLdb':
538
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
539
            cacheable=True))
540
    else: raise NotImplementedError("Can't list tables for "+module+' database')
541

    
542
##### Database management
543

    
544
def empty_db(db, schema='public', **kw_args):
545
    '''For kw_args, see tables()'''
546
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
547

    
548
##### Heuristic queries
549

    
550
def with_parsed_errors(db, func):
551
    '''Translates known DB errors to typed exceptions'''
552
    try: return func()
553
    except Exception, e:
554
        msg = str(e)
555
        match = re.search(r'duplicate key value violates unique constraint '
556
            r'"(([^\W_]+)_[^"]+)"', msg)
557
        if match:
558
            constraint, table = match.groups()
559
            try: cols = index_cols(db, table, constraint)
560
            except NotImplementedError: raise e
561
            else: raise DuplicateKeyException(cols, e)
562
        match = re.search(r'null value in column "(\w+)" violates not-null '
563
            'constraint', msg)
564
        if match: raise NullValueException([match.group(1)], e)
565
        raise # no specific exception raised
566

    
567
def try_insert(db, table, row, returning=None):
568
    '''Recovers from errors'''
569
    return with_parsed_errors(db, lambda: insert(db, table, row, returning,
570
        recover=True))
571

    
572
def put(db, table, row, pkey, row_ct_ref=None):
573
    '''Recovers from errors.
574
    Only works under PostgreSQL (uses INSERT RETURNING).
575
    '''
576
    try:
577
        cur = try_insert(db, table, row, pkey)
578
        if row_ct_ref != None and cur.rowcount >= 0:
579
            row_ct_ref[0] += cur.rowcount
580
        return value(cur)
581
    except DuplicateKeyException, e:
582
        return value(select(db, table, [pkey],
583
            util.dict_subset_right_join(row, e.cols), recover=True))
584

    
585
def get(db, table, row, pkey, row_ct_ref=None, create=False):
586
    '''Recovers from errors'''
587
    try: return value(select(db, table, [pkey], row, 1, recover=True))
588
    except StopIteration:
589
        if not create: raise
590
        return put(db, table, row, pkey, row_ct_ref) # insert new row
591

    
592
def put_table(db, out_table, out_cols, in_tables, in_cols, pkey,
593
    row_ct_ref=None, table_is_esc=False):
594
    '''Recovers from errors.
595
    Only works under PostgreSQL (uses INSERT RETURNING).
596
    @return Name of the table where the pkeys (from INSERT RETURNING) are made
597
        available
598
    '''
599
    pkeys_table = clean_name(out_table)+'_pkeys'
600
    def insert_():
601
        return insert_select(db, out_table, out_cols,
602
            *mk_select(db, in_tables[0], in_cols, table_is_esc=table_is_esc),
603
            returning=pkey, into=pkeys_table, recover=True,
604
            table_is_esc=table_is_esc)
605
    try:
606
        cur = with_parsed_errors(db, insert_)
607
        if row_ct_ref != None and cur.rowcount >= 0:
608
            row_ct_ref[0] += cur.rowcount
609
        
610
        # Add row_num to pkeys_table, so it can be joined with in_table's pkeys
611
        add_row_num(db, pkeys_table)
612
        
613
        return pkeys_table
614
    except DuplicateKeyException, e: raise
(22-22/33)