| 1 |
212
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aaronmk
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all: FORCE VegBank-VegBIEN
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| 2 |
197
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aaronmk
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$(MAKE) plots
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| 3 |
198
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aaronmk
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./join VegX VegBank
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| 4 |
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./join VegX VegBIEN
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| 5 |
199
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aaronmk
|
./review
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| 6 |
150
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aaronmk
|
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| 7 |
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FORCE:
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| 8 |
188
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aaronmk
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| 9 |
199
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aaronmk
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all =\
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| 10 |
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$(wildcard for_review/*.csv) \
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| 11 |
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$(filter-out VegX-% VegBank-%,$(wildcard *-VegBank.*.csv)) \
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| 12 |
212
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aaronmk
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VegX-*.plots.csv VegX-VegBIEN.organisms.csv schemas/vegbien.sql
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| 13 |
196
|
aaronmk
|
|
| 14 |
188
|
aaronmk
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clean: FORCE
|
| 15 |
196
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aaronmk
|
$(RM) $(all)
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| 16 |
188
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aaronmk
|
|
| 17 |
198
|
aaronmk
|
|
| 18 |
212
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aaronmk
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VegBank-VegBIEN: schemas/vegbien.sql VegX-VegBIEN.organisms.csv
|
| 19 |
188
|
aaronmk
|
|
| 20 |
212
|
aaronmk
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repl = ../scripts/util/repl <$< VegBank-VegBIEN.csv$(if $(filter %.csv,$<), 1) \
|
| 21 |
|
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>$@
|
| 22 |
198
|
aaronmk
|
|
| 23 |
212
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aaronmk
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schemas/vegbien.sql: schemas/vegbank.sql
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| 24 |
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$(repl)
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| 25 |
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| 26 |
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VegX-VegBIEN.organisms.csv: VegX-VegBank.organisms.csv
|
| 27 |
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$(repl)
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| 28 |
|
|
|
| 29 |
|
|
|
| 30 |
197
|
aaronmk
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plots: $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))
|
| 31 |
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|
|
| 32 |
188
|
aaronmk
|
chRoot = ../scripts/util/ch_root <$< >$@
|
| 33 |
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|
| 34 |
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chRoot2PlotsLeftVegx =\
|
| 35 |
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env \
|
| 36 |
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left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 37 |
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left_out_root='/*s/plotObservation' \
|
| 38 |
|
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$(chRoot)
|
| 39 |
|
|
|
| 40 |
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VegX-VegBank.plots.csv: VegX-VegBank.organisms.csv
|
| 41 |
|
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$(chRoot2PlotsVegxVegbank)
|
| 42 |
|
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chRoot2PlotsVegxVegbank =\
|
| 43 |
|
|
env \
|
| 44 |
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right_in_root='/taxonObservation/*_ID/observation' \
|
| 45 |
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right_out_root='/observation' \
|
| 46 |
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|
$(chRoot2PlotsLeftVegx)
|
| 47 |
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|
|
| 48 |
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|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 49 |
|
|
$(chRoot2PlotsVegxVegbien)
|
| 50 |
|
|
chRoot2PlotsVegxVegbien =\
|
| 51 |
|
|
env \
|
| 52 |
200
|
aaronmk
|
right_in_root='/taxonoccurrence/*_ID/plotevent' \
|
| 53 |
188
|
aaronmk
|
right_out_root='/plotevent' \
|
| 54 |
|
|
$(chRoot2PlotsLeftVegx)
|
