Project

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1
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2
coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
3
coordinatePrecision,//locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
4
footprintWKT,//locationdetermination/footprintgeometry_dwc,,91
5
county,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
6
stateProvince,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
7
country,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
8
continent,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
9
locality,//location/locationnarrative/_merge/1,,68
10
verbatimLocality,//location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
11
habitat,"//location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
12
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_toDouble/value/_alt/2/_avg/min,elevationrange/_toDouble/value/_range/from}/_units/value/_rangeStart/value,elevationrange/_toDouble/value/_range/to/_units/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
13
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_toDouble/value/_alt/2/_avg/max/_units/value,elevationrange/_toDouble/value/_range/to/_units/value/_alt/1}",,72
14
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf/value",,85
15
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf/value",,81
16
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf/value",,86
17
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf/value",,82
18
maximumDepthInMeters,//locationevent/waterdepth/_avg/max/_units/value,,75
19
minimumDepthInMeters,//locationevent/waterdepth/_avg/min/_units/value,,74
20
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
21
dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120
22
identifiedBy,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
23
scientificName,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
24
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
25
infraspecificEpithet,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
26
specificEpithet,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
27
genus,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
28
family,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
29
order,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
30
class,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
31
phylum,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
32
kingdom,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
33
recordedBy,//taxonoccurrence/verbatimcollectorname,,23
34
establishmentMeans,"/*_id/taxonoccurrence/{growthform/_toGrowthform/value/_map,iscultivated/_toBool/value/_map,isnative/_toBool/value/_map}/value",,30
35
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
36
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
37
fieldNotes,/description/_merge/1,,
38
taxonRemarks,/description/_merge/2,,158
39
catalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
40
occurrenceID,/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
41
recordNumber,/collectionnumber/_alt/1,,22
42
collectionID,/collectionnumber/_alt/2,,9
43
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
44
institutionID,//party/organizationname/_alt/1,,8
45
acceptedNameUsage,,,135
46
acceptedNameUsageID,,,128
47
associatedMedia,,,36
48
associatedOccurrences,,,38
49
associatedReferences,,,37
50
associatedSequences,,,39
51
associatedTaxa,,,40
52
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
53
bed,,,117
54
behavior,,,29
55
countryCode,,,64
56
dataGeneralizations,,,17
57
datasetID,,,10
58
datasetName,,,13
59
day,,Brad: OMIT,50
60
dcterms:accessRights,,,5
61
dcterms:bibliographicCitation,,,6
62
dcterms:language,,,2
63
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
64
dcterms:references,,,7
65
dcterms:rights,,,3
66
dcterms:rightsHolder,,,4
67
dcterms:type,,,0
68
disposition,,,33
69
dynamicProperties,,,18
70
earliestAgeOrLowestStage,,,109
71
earliestEonOrLowestEonothem,,,101
72
earliestEpochOrLowestSeries,,,107
73
earliestEraOrLowestErathem,,,103
74
earliestPeriodOrLowestSystem,,,105
75
endDayOfYear,,,47
76
eventID,,,41
77
eventRemarks,,,55
78
eventTime,,Brad: OMIT,45
79
footprintSRS,,,92
80
footprintSpatialFit,,,93
81
formation,,,115
82
geodeticDatum,,,87
83
geologicalContextID,,,100
84
georeferenceProtocol,,,96
85
georeferenceRemarks,,,99
86
georeferenceSources,,,97
87
georeferenceVerificationStatus,,,98
88
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
89
georeferencedDate,,,95
90
group,,,114
91
higherClassification,,,141
92
higherGeography,,,58
93
higherGeographyID,,,57
94
highestBiostratigraphicZone,,,112
95
identificationID,,,118
96
identificationQualifier,,,124
97
identificationReferences,,,121
98
identificationRemarks,,,123
99
identificationVerificationStatus,,,122
100
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
101
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
102
informationWithheld,,,16
103
institutionCode,,,
104
island,,,62
105
islandGroup,,,61
106
latestAgeOrHighestStage,,,110
107
latestEonOrHighestEonothem,,,102
108
latestEpochOrHighestSeries,,,108
109
latestEraOrHighestErathem,,,104
110
latestPeriodOrHighestSystem,,,106
111
lifeStage,,,27
112
lithostratigraphicTerms,,,113
113
locationAccordingTo,,,78
114
locationID,,,56
115
locationRemarks,,,79
116
lowestBiostratigraphicZone,,,111
117
maximumDistanceAboveSurfaceInMeters,,,77
118
measurementAccuracy,,,169
119
measurementDeterminedBy,,,172
120
measurementDeterminedDate,,,171
121
measurementID,,,166
122
measurementMethod,,,173
123
measurementRemarks,,,174
124
measurementType,,,167
125
measurementUnit,,,170
126
measurementValue,,,168
127
member,,,116
128
minimumDistanceAboveSurfaceInMeters,,,76
129
month,,,49
130
municipality,,,67
131
nameAccordingTo,,,138
132
nameAccordingToID,,,131
133
namePublishedIn,,,139
134
namePublishedInID,,,132
135
namePublishedInYear,,,140
136
nomenclaturalCode,,,155
137
nomenclaturalStatus,,,157
138
occurrenceRemarks,,,21
139
occurrenceStatus,,,31
140
originalNameUsage,,,137
141
originalNameUsageID,,,130
142
otherCatalogNumbers,,,34
143
ownerInstitutionCode,,,14
144
parentNameUsage,,,136
145
parentNameUsageID,,,129
146
pointRadiusSpatialFit,,,90
147
preparations,,Brad: OMIT,32
148
previousIdentifications,,Brad: OMIT,35
149
relatedResourceID,,Brad: OMIT,161
150
relationshipAccordingTo,,,163
151
relationshipEstablishedDate,,,164
152
relationshipOfResource,,Brad: OMIT,162
153
relationshipRemarks,,,165
154
reproductiveCondition,,,28
155
resourceID,,,160
156
resourceRelationshipID,,,159
157
samplingEffort,,,43
158
samplingProtocol,,,42
159
scientificNameID,,,127
160
startDayOfYear,,,46
161
subgenus,,,148
162
taxonConceptID,,,133
163
taxonID,,,126
164
taxonRank,,,151
165
taxonomicStatus,,,156
166
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
167
verbatimCoordinateSystem,,,83
168
verbatimCoordinates,,,80
169
verbatimDepth,,,73
170
verbatimElevation,,,70
171
verbatimEventDate,,,51
172
verbatimSRS,,,84
173
verbatimTaxonRank,,,152
174
vernacularName,,,154
175
waterBody,,,60
176
year,,,48
(2-2/6)