| 1 |
212
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aaronmk
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all: FORCE VegBank-VegBIEN
|
| 2 |
197
|
aaronmk
|
$(MAKE) plots
|
| 3 |
198
|
aaronmk
|
./join VegX VegBank
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| 4 |
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./join VegX VegBIEN
|
| 5 |
199
|
aaronmk
|
./review
|
| 6 |
150
|
aaronmk
|
|
| 7 |
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|
FORCE:
|
| 8 |
188
|
aaronmk
|
|
| 9 |
199
|
aaronmk
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all =\
|
| 10 |
|
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$(wildcard for_review/*.csv) \
|
| 11 |
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$(filter-out VegX-% VegBank-%,$(wildcard *-VegBank.*.csv)) \
|
| 12 |
212
|
aaronmk
|
VegX-*.plots.csv VegX-VegBIEN.organisms.csv schemas/vegbien.sql
|
| 13 |
196
|
aaronmk
|
|
| 14 |
188
|
aaronmk
|
clean: FORCE
|
| 15 |
196
|
aaronmk
|
$(RM) $(all)
|
| 16 |
188
|
aaronmk
|
|
| 17 |
221
|
aaronmk
|
sort = ../scripts/util/sort 1 0
|
| 18 |
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|
repl = ../scripts/util/repl
|
| 19 |
|
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chRoot = ../scripts/util/ch_root <$< >$@
|
| 20 |
198
|
aaronmk
|
|
| 21 |
221
|
aaronmk
|
|
| 22 |
212
|
aaronmk
|
VegBank-VegBIEN: schemas/vegbien.sql VegX-VegBIEN.organisms.csv
|
| 23 |
188
|
aaronmk
|
|
| 24 |
212
|
aaronmk
|
schemas/vegbien.sql: schemas/vegbank.sql
|
| 25 |
218
|
aaronmk
|
$(repl) <$< VegBank-VegBIEN.schema.csv|$(repl) VegBank-VegBIEN.csv >$@
|
| 26 |
212
|
aaronmk
|
|
| 27 |
|
|
VegX-VegBIEN.organisms.csv: VegX-VegBank.organisms.csv
|
| 28 |
221
|
aaronmk
|
$(repl) <$< VegBank-VegBIEN.csv 1|$(sort) >$@
|
| 29 |
212
|
aaronmk
|
|
| 30 |
|
|
|
| 31 |
197
|
aaronmk
|
plots: $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))
|
| 32 |
|
|
|
| 33 |
188
|
aaronmk
|
chRoot2PlotsLeftVegx =\
|
| 34 |
|
|
env \
|
| 35 |
|
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 36 |
|
|
left_out_root='/*s/plotObservation' \
|
| 37 |
|
|
$(chRoot)
|
| 38 |
|
|
|
| 39 |
|
|
VegX-VegBank.plots.csv: VegX-VegBank.organisms.csv
|
| 40 |
|
|
$(chRoot2PlotsVegxVegbank)
|
| 41 |
|
|
chRoot2PlotsVegxVegbank =\
|
| 42 |
|
|
env \
|
| 43 |
|
|
right_in_root='/taxonObservation/*_ID/observation' \
|
| 44 |
|
|
right_out_root='/observation' \
|
| 45 |
|
|
$(chRoot2PlotsLeftVegx)
|
| 46 |
|
|
|
| 47 |
|
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 48 |
|
|
$(chRoot2PlotsVegxVegbien)
|
| 49 |
|
|
chRoot2PlotsVegxVegbien =\
|
| 50 |
|
|
env \
|
| 51 |
200
|
aaronmk
|
right_in_root='/taxonoccurrence/*_ID/plotevent' \
|
| 52 |
188
|
aaronmk
|
right_out_root='/plotevent' \
|
| 53 |
|
|
$(chRoot2PlotsLeftVegx)
|
