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1
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misc = schemas/vegbien.sql schemas/vegbien_empty.sql VegX-VegBIEN.organisms.csv
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2
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3
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all: FORCE $(misc)
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4
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$(MAKE) plots
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5
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./join VegX VegBank
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6
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./join VegX VegBIEN
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7
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./review
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8
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.PRECIOUS: $(misc)
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9
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10
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.SUFFIXES:
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11
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12
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FORCE:
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13
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.PHONY: FORCE
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14
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15
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all =\
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16
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$(wildcard for_review/*.csv) \
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17
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$(filter-out VegX-% VegBank-%,$(wildcard *-VegBank.*.csv)) \
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18
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VegX-*.plots.csv $(misc)
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19
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20
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clean: FORCE
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21
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$(RM) $(all)
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22
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23
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repl = ../scripts/util/repl
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24
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sort = ../scripts/util/sort 1 0
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25
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chRoot = ../scripts/util/ch_root <$< >$@
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26
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empty = sed -nE 's/^CREATE TABLE ([0-9A-Za-z_]+) \($$/TRUNCATE \1 CASCADE;/p' \
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27
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<$< >$@
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28
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29
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|
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30
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schemas/vegbien.sql: schemas/vegbank.sql
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31
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$(repl) <$< VegBank-VegBIEN.schema.csv|$(repl) VegBank-VegBIEN.csv >$@
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32
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33
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schemas/vegbien_empty.sql: schemas/vegbien.sql
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34
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$(empty)
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35
|
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36
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VegX-VegBIEN.organisms.csv: VegX-VegBank.organisms.csv
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37
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$(repl) <$< VegBank-VegBIEN.csv 1|$(sort) >$@
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38
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|
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39
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40
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plots: FORCE $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))
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41
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42
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chRoot2PlotsLeftVegx =\
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43
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env \
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44
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left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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45
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left_out_root='/*s/plotObservation' \
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46
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$(chRoot)
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47
|
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48
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VegX-VegBank.plots.csv: VegX-VegBank.organisms.csv
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49
|
$(chRoot2PlotsVegxVegbank)
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50
|
chRoot2PlotsVegxVegbank =\
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51
|
env \
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52
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right_in_root='/taxonObservation/*_ID/observation' \
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53
|
right_out_root='/observation' \
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54
|
$(chRoot2PlotsLeftVegx)
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55
|
|
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56
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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57
|
$(chRoot2PlotsVegxVegbien)
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|
58
|
chRoot2PlotsVegxVegbien =\
|
|
59
|
env \
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|
60
|
right_in_root='/taxonoccurrence/*_ID/plotevent' \
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61
|
right_out_root='/plotevent' \
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62
|
$(chRoot2PlotsLeftVegx)
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