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1 1806 aaronmk
QMOR[DwC],VegBIEN:/specimenreplicate,Comments,Order
2 2248 aaronmk
coordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_toDouble/value/_noCV/value/_alt/1,,88
3 1806 aaronmk
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
4 2235 aaronmk
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=county]/placename",,66
5
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=stateProvince]/placename",,65
6
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=country]/placename",Brad: Required; reject record if this field NULL,63
7
continent,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=continent]/placename",Brad: OMIT,59
8 1806 aaronmk
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
9
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
10 2110 aaronmk
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_toDouble/value/_alt/2/_avg/min,elevationrange/_toDouble/value/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_toDouble/value/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
11
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_toDouble/value/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_toDouble/value/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
12
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf:[null=0,type=float]/value",,85
13
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf:[null=0,type=float]/value",,81
14
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf:[null=0,type=float]/value",,86
15
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf:[null=0,type=float]/value",,82
16 2250 aaronmk
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_toTimestamp/value/_*/date/_dateRangeStart,obsenddate/_toTimestamp/value/_*/date/_dateRangeEnd}/value/_alt/2",,44
17
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_toTimestamp/value/_*/date/_dateRangeStart/value/_alt/2,,120
18 1806 aaronmk
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
19
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
20
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
21
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
22
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
23
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
24
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
25
order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
26
class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
27
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
28
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
29
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23
30
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
31
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
32
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
33
id,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
34
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
35
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
36
acceptedNameUsage,,** No non-empty join mapping for acceptedNameUsage **
37
basisOfRecord,,** No non-empty join mapping for basisOfRecord **
38
behavior,,** No non-empty join mapping for behavior **
39
bibliographicCitation,,** No non-empty join mapping for bibliographicCitation **
40
datasetID,,** No non-empty join mapping for datasetID **
41
datasetName,,** No non-empty join mapping for datasetName **
42
eventRemarks,,** No non-empty join mapping for eventRemarks **
43
eventTime,,** No non-empty join mapping for eventTime **
44
geodeticDatum,,** No non-empty join mapping for geodeticDatum **
45
georeferenceProtocol,,** No non-empty join mapping for georeferenceProtocol **
46
georeferenceRemarks,,** No non-empty join mapping for georeferenceRemarks **
47
georeferenceSources,,** No non-empty join mapping for georeferenceSources **
48
georeferencedBy,,** No non-empty join mapping for georeferencedBy **
49
georeferencedDate,,** No non-empty join mapping for georeferencedDate **
50
identificationQualifier,,** No non-empty join mapping for identificationQualifier **
51
identificationRemarks,,** No non-empty join mapping for identificationRemarks **
52
individualCount,,** No non-empty join mapping for individualCount **
53
institutionCode,,** No non-empty join mapping for institutionCode **
54
language,,** No non-empty join mapping for language **
55
lifeStage,,** No non-empty join mapping for lifeStage **
56
locationRemarks,,** No non-empty join mapping for locationRemarks **
57
modified,,** No non-empty join mapping for modified **
58
municipality,,** No non-empty join mapping for municipality **
59
nomenclaturalCode,,** No non-empty join mapping for nomenclaturalCode **
60
occurrenceRemarks,,** No non-empty join mapping for occurrenceRemarks **
61
ownerInstitutionCode,,** No non-empty join mapping for ownerInstitutionCode **
62
preparations,,** No non-empty join mapping for preparations **
63
rights,,** No non-empty join mapping for rights **
64
rightsHolder,,** No non-empty join mapping for rightsHolder **
65
samplingProtocol,,** No non-empty join mapping for samplingProtocol **
66
taxonRank,,** No non-empty join mapping for taxonRank **
67
type,,** No non-empty join mapping for type **
68
typeStatus,,** No non-empty join mapping for typeStatus **
69
verbatimCoordinateSystem,,** No non-empty join mapping for verbatimCoordinateSystem **
70
verbatimCoordinates,,** No non-empty join mapping for verbatimCoordinates **
71
verbatimElevation,,** No non-empty join mapping for verbatimElevation **
72
verbatimEventDate,,** No non-empty join mapping for verbatimEventDate **
73
verbatimSRS,,** No non-empty join mapping for verbatimSRS **
74
waterBody,,** No non-empty join mapping for waterBody **