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224
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aaronmk
|
SED = sed -$(if $(filter Darwin,$(shell uname)),E,r)
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| 2 |
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| 3 |
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repl = ../scripts/util/repl
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| 4 |
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sort = ../scripts/util/sort 1 0
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| 5 |
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chRoot = ../scripts/util/ch_root <$< >$@
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| 6 |
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empty = $(SED) -n \
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| 7 |
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's/^CREATE TABLE ([0-9A-Za-z_]+) \($$/TRUNCATE \1 CASCADE;/p' <$< >$@
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| 8 |
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| 9 |
223
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aaronmk
|
misc = schemas/vegbien.sql schemas/vegbien_empty.sql VegX-VegBIEN.organisms.csv
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| 10 |
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| 11 |
224
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aaronmk
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| 12 |
223
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aaronmk
|
all: FORCE $(misc)
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| 13 |
197
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aaronmk
|
$(MAKE) plots
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| 14 |
198
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aaronmk
|
./join VegX VegBank
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| 15 |
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./join VegX VegBIEN
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| 16 |
199
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aaronmk
|
./review
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| 17 |
223
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aaronmk
|
.PRECIOUS: $(misc)
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| 18 |
150
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aaronmk
|
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| 19 |
223
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aaronmk
|
.SUFFIXES:
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| 20 |
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| 21 |
150
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aaronmk
|
FORCE:
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| 22 |
223
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aaronmk
|
.PHONY: FORCE
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| 23 |
188
|
aaronmk
|
|
| 24 |
199
|
aaronmk
|
all =\
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| 25 |
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$(wildcard for_review/*.csv) \
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| 26 |
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$(filter-out VegX-% VegBank-%,$(wildcard *-VegBank.*.csv)) \
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| 27 |
223
|
aaronmk
|
VegX-*.plots.csv $(misc)
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| 28 |
196
|
aaronmk
|
|
| 29 |
188
|
aaronmk
|
clean: FORCE
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| 30 |
196
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aaronmk
|
$(RM) $(all)
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| 31 |
188
|
aaronmk
|
|
| 32 |
198
|
aaronmk
|
|
| 33 |
212
|
aaronmk
|
schemas/vegbien.sql: schemas/vegbank.sql
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| 34 |
218
|
aaronmk
|
$(repl) <$< VegBank-VegBIEN.schema.csv|$(repl) VegBank-VegBIEN.csv >$@
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| 35 |
212
|
aaronmk
|
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| 36 |
223
|
aaronmk
|
schemas/vegbien_empty.sql: schemas/vegbien.sql
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| 37 |
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$(empty)
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| 38 |
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| 39 |
212
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aaronmk
|
VegX-VegBIEN.organisms.csv: VegX-VegBank.organisms.csv
|
| 40 |
221
|
aaronmk
|
$(repl) <$< VegBank-VegBIEN.csv 1|$(sort) >$@
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| 41 |
212
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aaronmk
|
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| 42 |
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| 43 |
223
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aaronmk
|
plots: FORCE $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))
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| 44 |
197
|
aaronmk
|
|
| 45 |
188
|
aaronmk
|
chRoot2PlotsLeftVegx =\
|
| 46 |
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env \
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| 47 |
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left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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| 48 |
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left_out_root='/*s/plotObservation' \
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| 49 |
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$(chRoot)
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| 50 |
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| 51 |
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VegX-VegBank.plots.csv: VegX-VegBank.organisms.csv
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| 52 |
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$(chRoot2PlotsVegxVegbank)
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| 53 |
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chRoot2PlotsVegxVegbank =\
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| 54 |
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env \
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| 55 |
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right_in_root='/taxonObservation/*_ID/observation' \
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| 56 |
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right_out_root='/observation' \
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| 57 |
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$(chRoot2PlotsLeftVegx)
|
| 58 |
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|
| 59 |
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VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 60 |
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$(chRoot2PlotsVegxVegbien)
|
| 61 |
|
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chRoot2PlotsVegxVegbien =\
|
| 62 |
|
|
env \
|
| 63 |
200
|
aaronmk
|
right_in_root='/taxonoccurrence/*_ID/plotevent' \
|
| 64 |
188
|
aaronmk
|
right_out_root='/plotevent' \
|
| 65 |
|
|
$(chRoot2PlotsLeftVegx)
|
