| 1 |
1441
|
aaronmk
|
NY[DwC],VegBIEN:/specimenreplicate,Comments,Order
|
| 2 |
2248
|
aaronmk
|
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_toDouble/value/_noCV/value/_alt/2,,89
|
| 3 |
1323
|
aaronmk
|
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
|
| 4 |
2235
|
aaronmk
|
County,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=county]/placename",,66
|
| 5 |
|
|
StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=stateProvince]/placename",,65
|
| 6 |
|
|
Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=country]/placename",Brad: Required; reject record if this field NULL,63
|
| 7 |
|
|
ContinentOcean,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank/_toPlacerank/value=_val]/parent_id""]/namedplace[rank/_toPlacerank/value=continent]/placename",Brad: OMIT,59
|
| 8 |
1275
|
aaronmk
|
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1/_merge/1,,68
|
| 9 |
|
|
Substrate,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1/_merge/2/_label[label=""substrate""]/value",,68
|
| 10 |
|
|
Vegetation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value",,68
|
| 11 |
1207
|
aaronmk
|
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
|
| 12 |
2110
|
aaronmk
|
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_toDouble/value/_alt/2/_avg/min,elevationrange/_toDouble/value/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_toDouble/value/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value/_nullIf:[null=.]/value",,71
|
| 13 |
|
|
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_toDouble/value/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_toDouble/value/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
|
| 14 |
|
|
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf:[null=0,type=float]/value",,81
|
| 15 |
|
|
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf:[null=0,type=float]/value",,82
|
| 16 |
1471
|
aaronmk
|
MaximumDepth,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
|
| 17 |
|
|
MinimumDepth,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
|
| 18 |
2250
|
aaronmk
|
DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_toTimestamp/value/_*/date/_dateRangeStart,obsenddate/_toTimestamp/value/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 19 |
|
|
MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_toTimestamp/value/_*/date/_dateRangeStart,obsenddate/_toTimestamp/value/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 20 |
|
|
YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_toTimestamp/value/_*/date/_dateRangeStart,obsenddate/_toTimestamp/value/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 21 |
|
|
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_toTimestamp/value/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
| 22 |
|
|
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_toTimestamp/value/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
| 23 |
|
|
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_toTimestamp/value/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
| 24 |
1353
|
aaronmk
|
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 25 |
|
|
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
| 26 |
|
|
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
| 27 |
|
|
Subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
|
| 28 |
|
|
Species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
|
| 29 |
|
|
Genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
|
| 30 |
|
|
Family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
|
| 31 |
|
|
Order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
|
| 32 |
|
|
Class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
|
| 33 |
|
|
Phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
|
| 34 |
|
|
Kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
|
| 35 |
1428
|
aaronmk
|
Collector,/*_id/taxonoccurrence/verbatimcollectorname,,23
|
| 36 |
1108
|
aaronmk
|
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
|
| 37 |
1223
|
aaronmk
|
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
| 38 |
1396
|
aaronmk
|
Notes,/description/_merge/1/_merge/1,,
|
| 39 |
|
|
PlantFungusDescription,"/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,
|
| 40 |
1413
|
aaronmk
|
CatalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
|
| 41 |
|
|
UniqueNYInternalRecordNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
|
| 42 |
2028
|
aaronmk
|
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1/_alt/1,,22
|
| 43 |
1053
|
aaronmk
|
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
|
| 44 |
1801
|
aaronmk
|
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord **
|
| 45 |
|
|
DateLastModified,,** No non-empty join mapping for DateLastModified **
|
| 46 |
|
|
IndividualCount,,** No non-empty join mapping for IndividualCount **
|
| 47 |
|
|
InstitutionCode,,** No non-empty join mapping for InstitutionCode **
|
| 48 |
|
|
JulianDay,,** No non-empty join mapping for JulianDay **
|
| 49 |
|
|
PreparationType,,** No non-empty join mapping for PreparationType **
|
| 50 |
|
|
PreviousCatalogNumber,,** No non-empty join mapping for PreviousCatalogNumber **
|
| 51 |
|
|
RelatedCatalogItem,,** No non-empty join mapping for RelatedCatalogItem **
|
| 52 |
|
|
RelationshipType,,** No non-empty join mapping for RelationshipType **
|
| 53 |
|
|
TimeOfDay,,** No non-empty join mapping for TimeOfDay **
|
| 54 |
|
|
TypeStatus,,** No non-empty join mapping for TypeStatus **
|
| 55 |
1738
|
aaronmk
|
key,,Not used because UniqueNYInternalRecordNumber is a better pkey
|
