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Revision 240

Added by Aaron Marcuse-Kubitza about 13 years ago

mappings/Makefile: Cleaned up

View differences:

mappings/Makefile
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SED = sed -$(if $(filter Darwin,$(os)),E,r)


  		




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repl = ../scripts/util/repl


  		




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sort = ../scripts/util/sort 1 0


  		




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chRoot = ../scripts/util/ch_root <$< >$@


  		




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empty = $(SED) -n \


  		




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's/^CREATE TABLE ([0-9A-Za-z_]+) \($$/TRUNCATE \1 CASCADE;/p' <$< >$@


  		




  
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#####


  		




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misc = schemas/vegbien.sql schemas/vegbien_empty.sql VegX-VegBIEN.organisms.csv


  		




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all: _not_file $(misc)


  		




  
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all: _not_file misc


  		




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	$(MAKE) plots


  		




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	./join VegX VegBank


  		




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	./join VegX VegBIEN


  		




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	./review


  		




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.PRECIOUS: $(misc)


  		




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.SUFFIXES:


  		




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_not_file:


  		




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.PHONY: _not_file


  		




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misc = schemas/vegbien.sql schemas/vegbien_empty.sql VegX-VegBIEN.organisms.csv


  		




  
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all =\


  		




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$(wildcard for_review/*.csv) \


  		




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$(filter-out VegX-% VegBank-%,$(wildcard *-VegBank.*.csv)) \


  		




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clean: _not_file


  		




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	$(RM) $(all)


  		




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#####


  		




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misc: $(misc)


  		




  
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.PRECIOUS: $(misc)


  		




  
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repl = ../scripts/util/repl


  		




  
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sort = ../scripts/util/sort 1 0


  		




  
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chRoot = ../scripts/util/ch_root <$< >$@


  		




  
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empty = $(SED) -n \


  		




  
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's/^CREATE TABLE ([0-9A-Za-z_]+) \($$/TRUNCATE \1 CASCADE;/p' <$< >$@


  		




  
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schemas/vegbien.sql: schemas/vegbank.sql


  		




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	$(repl) <$< VegBank-VegBIEN.schema.csv|$(repl) VegBank-VegBIEN.csv >$@


  		




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  ......




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VegX-VegBIEN.organisms.csv: VegX-VegBank.organisms.csv


  		




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	$(repl) <$< VegBank-VegBIEN.csv 1|$(sort) >$@


  		




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#####


  		




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plots: _not_file $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))


  		




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