| 1 |
784
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aaronmk
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##### Vars/functions
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| 2 |
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| 3 |
244
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aaronmk
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# Make
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| 4 |
247
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aaronmk
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SHELL := /bin/bash
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| 5 |
625
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aaronmk
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pathParts = $(shell path="$(1)"; echo "$${path%%/*}" "$${path\#*/}")
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| 6 |
739
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aaronmk
|
topDir = $(word 1,$(pathParts))
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| 7 |
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subPath = $(word 2,$(pathParts))
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| 8 |
625
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aaronmk
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subMake = $(MAKE) $(call subPath,$@) --directory=$(call topDir,$@)
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| 9 |
244
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aaronmk
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|
| 10 |
245
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aaronmk
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# OS
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| 11 |
247
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aaronmk
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os := $(shell uname)
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| 12 |
245
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aaronmk
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forOs = $(patsubst %,%-$(filter Linux Darwin,$(os)),$(1))
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| 13 |
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| 14 |
2034
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aaronmk
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# System
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| 15 |
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date = $(shell date +"%Y-%m-%d-%H-%M-%S")
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| 16 |
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| 17 |
241
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aaronmk
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# Terminal
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| 18 |
247
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aaronmk
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esc := '['
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| 19 |
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reset := $(esc)'0m'
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| 20 |
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emph := $(esc)'7m '
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| 21 |
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endEmph := ' '$(reset)
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| 22 |
245
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aaronmk
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|
| 23 |
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# User interaction
|
| 24 |
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| 25 |
1745
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aaronmk
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done = echo; echo $(emph)"Finished $@"$(endEmph); echo
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| 26 |
245
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aaronmk
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|
| 27 |
247
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aaronmk
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wait := read -p $(emph)'Press ENTER to continue:'$(endEmph) REPLY
|
| 28 |
245
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aaronmk
|
|
| 29 |
2090
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aaronmk
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confirm = $(if $(shell read -p $(emph)"$(1)"$(endEmph)$$'$(if\
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| 30 |
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$(2),\n$(2))\nContinue? (y/n) ' REPLY; test "$$REPLY" = y && echo t),,\
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| 31 |
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$(error Aborting))
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| 32 |
235
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aaronmk
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| 33 |
335
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aaronmk
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# File editing
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| 34 |
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sudoAppend = echo $$'$(2)'|sudo tee -a $(1) >/dev/null
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| 35 |
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| 36 |
2091
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aaronmk
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# DB
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| 37 |
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mkSchemaCmd = 'CREATE SCHEMA $(1);'
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| 38 |
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rmSchemaCmd = 'DROP SCHEMA IF EXISTS $(1) CASCADE;'
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| 39 |
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| 40 |
784
|
aaronmk
|
##### Environment
|
| 41 |
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| 42 |
225
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aaronmk
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export PGOPTIONS = --client-min-messages=WARNING
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| 43 |
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| 44 |
784
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aaronmk
|
##### General targets
|
| 45 |
225
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aaronmk
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|
| 46 |
414
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aaronmk
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all:
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| 47 |
228
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aaronmk
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|
| 48 |
1260
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aaronmk
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.SUFFIXES: # turn off built-in suffix rules
|
| 49 |
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.SECONDARY: # don't automatically delete intermediate files
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| 50 |
1354
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aaronmk
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.DELETE_ON_ERROR: # delete target if recipe fails
|
| 51 |
225
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aaronmk
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|
| 52 |
383
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aaronmk
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_always:
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| 53 |
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.PHONY: _always
|
| 54 |
202
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aaronmk
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|
| 55 |
1274
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aaronmk
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remake: _always clean
|
| 56 |
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$(MAKE)
|
| 57 |
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# re-run make so that cache of existing files is reset
|
| 58 |
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| 59 |
1288
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aaronmk
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%/remake: _always
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| 60 |
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$(MAKE) $(@D)/clean
|
| 61 |
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$(MAKE) $(@D)/
|
| 62 |
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# re-run make so that cache of existing files is reset
|
| 63 |
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| 64 |
1813
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aaronmk
|
%-remake: _always
|
| 65 |
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rm -f $*
|
| 66 |
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$(MAKE) $*
|
| 67 |
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# re-run make so that cache of existing files is reset
|
| 68 |
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| 69 |
784
|
aaronmk
|
##### Installation
|
| 70 |
241
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aaronmk
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|
| 71 |
411
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aaronmk
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install: _always core mysql inputs/install test
|
| 72 |
241
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aaronmk
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@$(done)
|
| 73 |
202
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aaronmk
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|
| 74 |
418
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aaronmk
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uninstall: _always inputs/uninstall rm_mysql rm_core ;
|
| 75 |
241
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aaronmk
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|
| 76 |
418
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aaronmk
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reinstall: _always uninstall install ;
|
| 77 |
225
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aaronmk
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|
| 78 |
784
|
aaronmk
|
##### Core: VegBIEN DB and dependencies
|
| 79 |
202
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aaronmk
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| 80 |
1746
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aaronmk
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core: _always $(call forOs,python php postgres) db
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| 81 |
241
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aaronmk
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@$(done)
|
| 82 |
235
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aaronmk
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|
| 83 |
1746
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aaronmk
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rm_core: _always rm_db ;
|
| 84 |
241
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aaronmk
|
|
| 85 |
418
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aaronmk
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reinstall_core: _always rm_core core ;
|
| 86 |
241
|
aaronmk
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|
| 87 |
784
|
aaronmk
|
##### Python
|
| 88 |
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|
| 89 |
383
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aaronmk
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python-Linux: _always
|
| 90 |
2618
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aaronmk
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-sudo apt-get install python
|
| 91 |
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-sudo apt-get install python-dev
|
| 92 |
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-sudo apt-get install python-dateutil
|
| 93 |
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-sudo apt-get install python-parallel
|
| 94 |
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-sudo apt-get install python-profiler
|
| 95 |
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-sudo apt-get install python-pip
|
| 96 |
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-sudo apt-get install pymetrics
|
| 97 |
1845
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aaronmk
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-sudo pip install pp
|
| 98 |
284
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aaronmk
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|
| 99 |
383
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aaronmk
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python-Darwin: _always
|
| 100 |
284
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aaronmk
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@echo $(emph)'Installing python-dateutil on Mac OS X:'$(endEmph)
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| 101 |
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@echo 'Download it: http://labix.org/download/python-dateutil/python-dateutil-1.5.tar.gz'
|
| 102 |
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@echo 'Extract the archive'
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| 103 |
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@echo 'Change to the directory of the extracted files'
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| 104 |
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@echo 'Run python setup.py build'
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| 105 |
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@echo 'Run sudo python setup.py install'
|
| 106 |
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@echo "Run python -c 'import dateutil'"
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| 107 |
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@$(wait)
|
| 108 |
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|
| 109 |
1599
|
aaronmk
|
##### PHP
|
| 110 |
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| 111 |
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php-Linux: _always
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| 112 |
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-sudo apt-get install php-http-request
|
| 113 |
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| 114 |
|
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php-Darwin: _always
|
| 115 |
1600
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aaronmk
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@echo $(emph)'Installing PHP PEAR and HTTP_Request on Mac OS X:'$(endEmph)
|
| 116 |
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@echo 'Download http://pear.php.net/go-pear.phar'
|
| 117 |
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@echo 'Change to the directory of the downloaded file'
|
| 118 |
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@echo 'Run php -d detect_unicode=0 go-pear.phar'
|
| 119 |
|
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@echo 'Whenever prompted, press Enter to select default options'
|
| 120 |
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@echo 'Add $$HOME/pear/bin to your $$PATH'
|
| 121 |
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@echo 'Add $(HOME)/pear/share/pear to your php.ini include_path'
|
| 122 |
1665
|
aaronmk
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@echo 'If needed, set $$PHPRC to your php.ini'
|
| 123 |
1600
|
aaronmk
|
@echo "Run pear install HTTP_Request"
|
| 124 |
|
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@echo 'To run a php command: php -c <php.ini-path> ...'
|
| 125 |
1599
|
aaronmk
|
@$(wait)
|
| 126 |
|
|
|
| 127 |
784
|
aaronmk
|
##### PostgreSQL
|
| 128 |
|
|
|
| 129 |
1970
|
aaronmk
|
editPhppgadminApacheConf = echo $$'1\n,s/deny from all/allow from all/\nwq'|\
|
| 130 |
336
|
aaronmk
|
sudo ed --loose-exit-status --verbose /etc/phppgadmin/apache.conf
|
| 131 |
334
|
aaronmk
|
|
| 132 |
|
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apacheConf := /etc/apache2/apache2.conf
|
| 133 |
|
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apacheConfPhppgadminLine := Include /etc/phppgadmin/apache.conf
|
| 134 |
|
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editApacheConfForPhppgadmin =\
|
| 135 |
|
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$(if $(shell grep -F "$(apacheConfPhppgadminLine)" $(apacheConf)),,\
|
| 136 |
|
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$(call sudoAppend,$(apacheConf),\n$(apacheConfPhppgadminLine)))
|
| 137 |
|
|
|
| 138 |
335
|
aaronmk
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nonApacheOnPort80 = $(shell sudo lsof -i :80|tail -n +2|grep -v -F apache2)
|
| 139 |
336
|
aaronmk
|
editApachePortsConf = echo $$'1\n,s/\\b80\\b/8080/g\nwq'|\
|
| 140 |
|
|
sudo ed --loose-exit-status --verbose /etc/apache2/ports.conf
|
| 141 |
334
|
aaronmk
|
|
| 142 |
383
|
aaronmk
|
postgres-Linux: _always
|
| 143 |
2618
|
aaronmk
|
-sudo apt-get install postgresql
|
| 144 |
2619
|
aaronmk
|
-sudo apt-get install postgresql-plpython-"$$(env minor=1 bin/pg_version)"
|
| 145 |
2618
|
aaronmk
|
-sudo apt-get install libpq-dev
|
| 146 |
|
|
-sudo apt-get install phppgadmin
|
| 147 |
336
|
aaronmk
|
$(editPhppgadminApacheConf)
|
| 148 |
334
|
aaronmk
|
$(editApacheConfForPhppgadmin)
|
| 149 |
336
|
aaronmk
|
$(if $(nonApacheOnPort80),$(editApachePortsConf))
|
| 150 |
334
|
aaronmk
|
-sudo apache2ctl restart
|
| 151 |
284
|
aaronmk
|
-sudo pip install psycopg2
|
| 152 |
2619
|
aaronmk
|
# run pg_version inline because it needs postgresql to be installed first
|
| 153 |
334
|
aaronmk
|
# ignore errors if conf files already edited
|
| 154 |
235
|
aaronmk
|
|
| 155 |
383
|
aaronmk
|
postgres-Darwin: _always
|
| 156 |
254
|
aaronmk
|
@echo $(emph)'Installing PostgreSQL on Mac OS X:'$(endEmph)
|
| 157 |
|
|
@echo 'Download it using the topmost "Mac OS X" link at http://http://www.enterprisedb.com/products-services-training/pgdownload'
|
| 158 |
|
|
@echo 'Open the disk image'
|
| 159 |
|
|
@echo 'Run the installer in it'
|
| 160 |
|
|
@$(wait)
|
| 161 |
235
|
aaronmk
|
|
| 162 |
418
|
aaronmk
|
postgres-: _always ; # other OSes
|
| 163 |
241
|
aaronmk
|
|
| 164 |
247
|
aaronmk
|
psqlOpts := --set ON_ERROR_STOP=1 --quiet
|
| 165 |
1980
|
aaronmk
|
psqlAsAdmin := sudo -E -u postgres psql $(psqlOpts)
|
| 166 |
|
|
# -E preserves env vars so PGOPTIONS is passed to psql
|
| 167 |
2624
|
aaronmk
|
psqlAsAdminVegbien := $(psqlAsAdmin) vegbien
|
| 168 |
1519
|
aaronmk
|
psqlAsBien := bin/psql_vegbien $(psqlOpts)
|
| 169 |
272
|
aaronmk
|
bienPassword := $(shell cat config/bien_password)
|
| 170 |
241
|
aaronmk
|
|
| 171 |
784
|
aaronmk
|
##### VegBIEN DB
|
| 172 |
241
|
aaronmk
|
|
| 173 |
1967
|
aaronmk
|
#### DB and bien user
|
| 174 |
|
|
|
| 175 |
2090
|
aaronmk
|
confirmRmDb = $(call confirm,WARNING: This will delete your entire VegBIEN\
|
| 176 |
|
|
DB!,This includes all public schema versions and staging tables.)
|
| 177 |
2089
|
aaronmk
|
|
| 178 |
2621
|
aaronmk
|
confirmRmSchema = $(call confirm,WARNING:\
|
| 179 |
|
|
This will delete the $(1) schema of your VegBIEN DB!,$(2))
|
| 180 |
|
|
confirmRmPublicSchema =\
|
| 181 |
|
|
$(call confirmRmSchema,current public,To save it: make schemas/rotate)
|
| 182 |
2089
|
aaronmk
|
|
| 183 |
2091
|
aaronmk
|
rmPublicSchema := $(call rmSchemaCmd,public)
|
| 184 |
1967
|
aaronmk
|
|
| 185 |
2624
|
aaronmk
|
db: mk_db rm_initial_public schemas/functions/reset schemas/py_functions/reset\
|
| 186 |
|
|
schemas/install _always ;e
|
| 187 |
1967
|
aaronmk
|
|
| 188 |
|
|
mk_db: _always
|
| 189 |
1745
|
aaronmk
|
-echo "CREATE USER bien PASSWORD '$(bienPassword)';"|$(psqlAsAdmin)
|
| 190 |
2037
|
aaronmk
|
-echo "CREATE DATABASE vegbien WITH OWNER bien TEMPLATE template1 \
|
| 191 |
1940
|
aaronmk
|
ENCODING 'UTF8' LC_COLLATE 'en_US.UTF-8' LC_CTYPE 'en_US.UTF-8';"|$(psqlAsAdmin)
|
| 192 |
2091
|
aaronmk
|
# ignore errors if user or database exists
|
| 193 |
|
|
|
| 194 |
|
|
rm_initial_public: _always
|
| 195 |
2089
|
aaronmk
|
@$(confirmRmPublicSchema)
|
| 196 |
2624
|
aaronmk
|
echo $(rmPublicSchema)|$(psqlAsAdminVegbien)
|
| 197 |
1967
|
aaronmk
|
# drop public schema *as admin* because it starts out owned by postgres
|
| 198 |
241
|
aaronmk
|
|
| 199 |
383
|
aaronmk
|
rm_db: _always
|
| 200 |
1748
|
aaronmk
|
@$(confirmRmDb)
|
| 201 |
|
|
echo "DROP DATABASE IF EXISTS vegbien;"|$(psqlAsAdmin)
|
| 202 |
|
|
echo "DROP USER IF EXISTS bien;"|$(psqlAsAdmin)
|
| 203 |
241
|
aaronmk
|
|
| 204 |
418
|
aaronmk
|
reinstall_db: _always rm_db db ;
|
| 205 |
241
|
aaronmk
|
|
| 206 |
1967
|
aaronmk
|
#### public schema
|
| 207 |
|
|
|
| 208 |
|
|
schemas/install: schemas/vegbien.sql _always
|
| 209 |
2091
|
aaronmk
|
-echo $(call mkSchemaCmd,public)|$(psqlAsBien)
|
| 210 |
2036
|
aaronmk
|
<$< $(psqlAsBien)
|
| 211 |
1967
|
aaronmk
|
# ignore errors if schema exists
|
| 212 |
|
|
# public schema will be owned by bien
|
| 213 |
|
|
|
| 214 |
|
|
schemas/uninstall: _always
|
| 215 |
2089
|
aaronmk
|
@$(confirmRmPublicSchema)
|
| 216 |
1967
|
aaronmk
|
echo $(rmPublicSchema)|$(psqlAsBien)
|
| 217 |
|
|
|
| 218 |
2034
|
aaronmk
|
schemas/rotate: _always schemas/rotate-only schemas/install ;
|
| 219 |
|
|
schemas/rotate-only: _always
|
| 220 |
|
|
echo 'ALTER SCHEMA public RENAME TO "public.$(date)";'|$(psqlAsBien)
|
| 221 |
|
|
|
| 222 |
389
|
aaronmk
|
empty_db: _always schemas/vegbien_empty.sql
|
| 223 |
2089
|
aaronmk
|
@$(confirmRmPublicSchema)
|
| 224 |
389
|
aaronmk
|
$(psqlAsBien) <schemas/vegbien_empty.sql
|
| 225 |
241
|
aaronmk
|
|
| 226 |
2091
|
aaronmk
|
#### functions schema
|
| 227 |
|
|
|
| 228 |
2095
|
aaronmk
|
schemas/functions/reset: schemas/functions.sql _always
|
| 229 |
2621
|
aaronmk
|
@$(call confirmRmSchema,functions)
|
| 230 |
2091
|
aaronmk
|
echo $(call rmSchemaCmd,functions)|$(psqlAsBien)
|
| 231 |
2095
|
aaronmk
|
<$< $(psqlAsBien)
|
| 232 |
2091
|
aaronmk
|
|
| 233 |
2624
|
aaronmk
|
#### py_functions schema
|
| 234 |
|
|
|
| 235 |
|
|
schemas/py_functions/reset: schemas/py_functions.sql _always
|
| 236 |
|
|
@$(call confirmRmSchema,py_functions)
|
| 237 |
|
|
echo $(call rmSchemaCmd,py_functions)|$(psqlAsBien)
|
| 238 |
|
|
<$< $(psqlAsAdminVegbien)
|
| 239 |
|
|
|
| 240 |
784
|
aaronmk
|
##### MySQL
|
| 241 |
241
|
aaronmk
|
|
| 242 |
383
|
aaronmk
|
mysql: _always $(call forOs,mysql) mysql_user
|
| 243 |
241
|
aaronmk
|
@$(done)
|
| 244 |
|
|
|
| 245 |
418
|
aaronmk
|
rm_mysql: _always rm_mysql_user ;
|
| 246 |
241
|
aaronmk
|
|
| 247 |
383
|
aaronmk
|
mysql-Linux: _always
|
| 248 |
244
|
aaronmk
|
@echo $(emph)"If asked for MySQL root password, enter $(bienPassword)"$(endEmph)
|
| 249 |
238
|
aaronmk
|
@$(wait)
|
| 250 |
237
|
aaronmk
|
-sudo apt-get install mysql-server mysql-client python-mysqldb
|
| 251 |
235
|
aaronmk
|
|
| 252 |
383
|
aaronmk
|
mysql-Darwin: _always
|
| 253 |
244
|
aaronmk
|
@echo $(emph)'Installing MySQLdb Python driver on Mac OS X 10.7 (may work on other versions):'$(endEmph)
|
| 254 |
235
|
aaronmk
|
@echo 'Download it using "latest version" link at http://sourceforge.net/projects/mysql-python/files/'
|
| 255 |
|
|
@echo 'Extract the archive'
|
| 256 |
|
|
@echo '(From http://www.rustyrazorblade.com/2011/11/installing-mysqldb-on-macos-lion/:)'
|
| 257 |
284
|
aaronmk
|
@echo 'Run ln -s /usr/local/mysql/lib/libmysqlclient.18.dylib /usr/lib/libmysqlclient.18.dylib'
|
| 258 |
|
|
@echo 'Run ln -s /usr/local/mysql/lib /usr/local/mysql/lib/mysql'
|
| 259 |
235
|
aaronmk
|
@echo '(From http://blog.infoentropy.com/MySQL-python_EnvironmentError_mysql_config_not_found:)'
|
| 260 |
|
|
@echo 'Edit site.cfg and change the line like "mysql_config = " to "mysql_config = /usr/local/mysql/bin/mysql_config"'
|
| 261 |
|
|
@echo '(From http://www.mangoorange.com/2008/08/01/installing-python-mysqldb-122-on-mac-os-x/:)'
|
| 262 |
|
|
@echo 'Change to the directory of the extracted files'
|
| 263 |
284
|
aaronmk
|
@echo 'Run python setup.py clean'
|
| 264 |
|
|
@echo 'Run python setup.py build'
|
| 265 |
235
|
aaronmk
|
@echo 'Run sudo python setup.py install'
|
| 266 |
|
|
@echo "Run python -c 'import MySQLdb'"
|
| 267 |
238
|
aaronmk
|
@$(wait)
|
| 268 |
235
|
aaronmk
|
|
| 269 |
383
|
aaronmk
|
mysql-: _always # other OSes
|
| 270 |
235
|
aaronmk
|
|
| 271 |
247
|
aaronmk
|
mysqlAsRoot := mysql --user=root --password='$(bienPassword)'
|
| 272 |
235
|
aaronmk
|
|
| 273 |
383
|
aaronmk
|
mysql_user: _always
|
| 274 |
241
|
aaronmk
|
-$($@_cmd)
|
| 275 |
364
|
aaronmk
|
# ignore errors if user exists
|
| 276 |
244
|
aaronmk
|
mysql_user_cmd = echo "CREATE USER 'bien'@'localhost' IDENTIFIED BY \
|
| 277 |
245
|
aaronmk
|
'$(bienPassword)';"|$(mysqlAsRoot)
|
| 278 |
202
|
aaronmk
|
|
| 279 |
383
|
aaronmk
|
rm_mysql_user: _always
|
| 280 |
245
|
aaronmk
|
-echo "DROP USER 'bien'@'localhost';"|$(mysqlAsRoot)
|
| 281 |
364
|
aaronmk
|
# ignore errors if user exists
|
| 282 |
202
|
aaronmk
|
|
| 283 |
784
|
aaronmk
|
##### Datasources
|
| 284 |
202
|
aaronmk
|
|
| 285 |
418
|
aaronmk
|
inputs: _always inputs/all ;
|
| 286 |
245
|
aaronmk
|
|
| 287 |
1542
|
aaronmk
|
import: _always import-msg inputs/import ;
|
| 288 |
|
|
import-msg: _always
|
| 289 |
1550
|
aaronmk
|
@echo $(emph)"To import all inputs at once:"$(endEmph) . bin/import_all
|
| 290 |
1542
|
aaronmk
|
@echo
|
| 291 |
|
|
@$(wait)
|
| 292 |
250
|
aaronmk
|
|
| 293 |
1458
|
aaronmk
|
verify: _always inputs/verify
|
| 294 |
1241
|
aaronmk
|
@$(done)
|
| 295 |
386
|
aaronmk
|
|
| 296 |
1458
|
aaronmk
|
test: _always inputs/test
|
| 297 |
397
|
aaronmk
|
@$(done)
|
| 298 |
1458
|
aaronmk
|
|
| 299 |
|
|
##### Testing
|
| 300 |
|
|
|
| 301 |
1743
|
aaronmk
|
test-all: _always remake test missing_mappings
|
| 302 |
1458
|
aaronmk
|
@$(done)
|
| 303 |
1967
|
aaronmk
|
|
| 304 |
|
|
##### Subdir forwarding
|
| 305 |
|
|
|
| 306 |
|
|
# Must come last so overridden targets are not forwarded
|
| 307 |
|
|
|
| 308 |
|
|
define subdirTargets
|
| 309 |
|
|
$(subdir): _always
|
| 310 |
|
|
+$$(subMake)
|
| 311 |
|
|
|
| 312 |
|
|
$(subdir)%: _always
|
| 313 |
|
|
+$$(subMake)
|
| 314 |
|
|
.PRECIOUS: $(subdir)% # let subdir's Makefile decide whether to delete on error
|
| 315 |
|
|
|
| 316 |
|
|
$(subdir)reinstall: _always $(subdir)uninstall $(subdir)install ;
|
| 317 |
|
|
endef
|
| 318 |
|
|
$(foreach subdir,$(wildcard */),$(eval $(subdirTargets)))
|
| 319 |
|
|
|
| 320 |
|
|
Makefile: ;
|
| 321 |
|
|
|
| 322 |
|
|
%: $(addsuffix %,$(dir $(shell echo */Makefile))) _always ;
|
| 323 |
1999
|
aaronmk
|
|
| 324 |
|
|
#### Maps validation
|
| 325 |
|
|
|
| 326 |
|
|
# Must come after Subdir forwarding to avoid infinite recursion, for some reason
|
| 327 |
|
|
|
| 328 |
|
|
missing_mappings: _always missing_join_mappings missing_input_mappings ;
|
| 329 |
|
|
|
| 330 |
|
|
missing_%_mappings: _always # stem is one of join|input
|
| 331 |
|
|
@echo $(emph)"Missing $* mappings:"$(endEmph)
|
| 332 |
|
|
@+$(MAKE) inputs/$@|grep -v -e ' Missing '\
|
| 333 |
|
|
$(if $(filter join,$*), -e '^make '|sort|uniq)
|
