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Revision 320

SALVIAS organisms mapping: Use _alt to merge tag1 and tag2. Fixes failing diff due to duplicate stemCodes.

View differences:

test/accepted_output/SALVIAS.organisms.VegBIEN.xml
23 23
            <stemCount>
24 24
                <stemCount>1</stemCount>
25 25
                <individual>
26
                    <stemCode>7</stemCode>
27 26
                    <stemCode>8</stemCode>
28 27
                </individual>
29 28
                <stemDiameter>662</stemDiameter>
......
286 285
            <stemCount>
287 286
                <stemCount>1</stemCount>
288 287
                <individual>
289
                    <stemCode>84</stemCode>
290 288
                    <stemCode>91</stemCode>
291 289
                </individual>
292 290
                <stemDiameter>215</stemDiameter>
test/accepted_output/SALVIAS.organisms.VegX.xml
53 53
    <individualOrganisms>
54 54
        <individualOrganism id="0">
55 55
            <taxonNameUsageConceptsID>0</taxonNameUsageConceptsID>
56
            <identificationLabel>7</identificationLabel>
57 56
            <identificationLabel>8</identificationLabel>
58 57
        </individualOrganism>
59 58
        <individualOrganism id="1">
60 59
            <taxonNameUsageConceptsID>1</taxonNameUsageConceptsID>
61
            <identificationLabel>84</identificationLabel>
62 60
            <identificationLabel>91</identificationLabel>
63 61
        </individualOrganism>
64 62
    </individualOrganisms>
mappings/VegX-VegBank.organisms.csv
66 66
"/simpleUserdefined[name=substrate]/value","/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=substrate]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue"
67 67
"/simpleUserdefined[name=vegetation]/value","/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=vegetation]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue"
68 68
"/*ID->/*s/individualOrganism/identificationLabel","/taxonImportance/stemCount/stemLocation/stemCode"
69
"/*ID->/*s/individualOrganism/identificationLabel/_alt/1","/taxonImportance/stemCount/stemLocation/stemCode/_alt/1"
70
"/*ID->/*s/individualOrganism/identificationLabel/_alt/2","/taxonImportance/stemCount/stemLocation/stemCode/_alt/2"
69 71
"/simpleUserdefined[name=xPosition]/value","/taxonImportance/stemCount/stemLocation/stemXPosition"
70 72
"/simpleUserdefined[name=yPosition]/value","/taxonImportance/stemCount/stemLocation/stemYPosition"
71 73
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode","/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber"
mappings/SALVIAS_db-VegBIEN.organisms.csv
5 5
cover_percent,/collectiveobs/cover,
6 6
intercept_cm,"/collectiveobs/definedValue[*_ID/userDefined[tableName=collectiveobs,userDefinedName=interceptCm]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
7 7
ht_first_branch_m,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=heightFirstBranchM]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
8
tag1,/collectiveobs/stemCount/individual/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
9
tag2,/collectiveobs/stemCount/individual/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
8
tag2,/collectiveobs/stemCount/individual/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
9
tag1,/collectiveobs/stemCount/individual/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
10 10
x_position,/collectiveobs/stemCount/individual/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
11 11
y_position,/collectiveobs/stemCount/individual/stemYPosition,Brad: See comment above for x_position
12 12
temp_dbh,/collectiveobs/stemCount/stemDiameter,
mappings/VegX-VegBIEN.organisms.csv
63 63
/simpleUserdefined[name=substrate]/value,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=substrate]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue"
64 64
/simpleUserdefined[name=vegetation]/value,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=vegetation]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue"
65 65
/*ID->/*s/individualOrganism/identificationLabel,/collectiveobs/stemCount/individual/stemCode
66
/*ID->/*s/individualOrganism/identificationLabel/_alt/1,/collectiveobs/stemCount/individual/stemCode/_alt/1
67
/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/collectiveobs/stemCount/individual/stemCode/_alt/2
66 68
/simpleUserdefined[name=xPosition]/value,/collectiveobs/stemCount/individual/stemXPosition
67 69
/simpleUserdefined[name=yPosition]/value,/collectiveobs/stemCount/individual/stemYPosition
68 70
/diameterBaseDistance[baseDistance=1.37]/diameter,/collectiveobs/stemCount/stemDiameter
mappings/SALVIAS-VegX.organisms.csv
7 7
"subplot","/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier",
8 8
"individual_code","/simpleUserdefined[name=individualCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
9 9
"ind_id",,"Brad: OMIT"
10
"tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
"tag2","/*ID->/*s/individualOrganism/identificationLabel","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
10
"tag1","/*ID->/*s/individualOrganism/identificationLabel/_alt/2","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
"tag2","/*ID->/*s/individualOrganism/identificationLabel/_alt/1","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 12
"x_position","/simpleUserdefined[name=xPosition]/value","Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 13
"y_position","/simpleUserdefined[name=yPosition]/value","Brad: See comment above for x_position"
14 14
"voucher_string",,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
mappings/for_review/VegX-VegBank.organisms.csv
66 66
/simpleUserdefined[name=substrate]/value,"//stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=substrate]]/definedValue"
67 67
/simpleUserdefined[name=vegetation]/value,"//stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=vegetation]]/definedValue"
68 68
//individualOrganism/identificationLabel,//stemLocation/stemCode
69
//individualOrganism/identificationLabel/_alt/1,//stemLocation/stemCode/_alt/1
70
//individualOrganism/identificationLabel/_alt/2,//stemLocation/stemCode/_alt/2
69 71
/simpleUserdefined[name=xPosition]/value,//stemLocation/stemXPosition
70 72
/simpleUserdefined[name=yPosition]/value,//stemLocation/stemYPosition
71 73
//taxonNameUsageConcept/authorCode,/taxonInterpretation[roleCode=collector]/collectionNumber
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv
5 5
cover_percent,//collectiveobs/cover,
6 6
intercept_cm,"//collectiveobs/definedValue[*_ID/userDefined[tableName=collectiveobs,userDefinedName=interceptCm]]/definedValue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
7 7
ht_first_branch_m,"//individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=heightFirstBranchM]]/definedValue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
8
tag1,//individual/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
9
tag2,//individual/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
8
tag2,//individual/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
9
tag1,//individual/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
10 10
x_position,//individual/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
11 11
y_position,//individual/stemYPosition,Brad: See comment above for x_position
12 12
temp_dbh,//stemCount/stemDiameter,
mappings/for_review/VegX-VegBIEN.organisms.csv
63 63
/simpleUserdefined[name=substrate]/value,"//individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=substrate]]/definedValue"
64 64
/simpleUserdefined[name=vegetation]/value,"//individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=vegetation]]/definedValue"
65 65
//individualOrganism/identificationLabel,//individual/stemCode
66
//individualOrganism/identificationLabel/_alt/1,//individual/stemCode/_alt/1
67
//individualOrganism/identificationLabel/_alt/2,//individual/stemCode/_alt/2
66 68
/simpleUserdefined[name=xPosition]/value,//individual/stemXPosition
67 69
/simpleUserdefined[name=yPosition]/value,//individual/stemYPosition
68 70
/diameterBaseDistance[baseDistance=1.37]/diameter,//stemCount/stemDiameter
mappings/for_review/SALVIAS-VegX.organisms.csv
7 7
subplot,//plot/plotUniqueIdentifier,
8 8
individual_code,/simpleUserdefined[name=individualCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
9 9
ind_id,,Brad: OMIT
10
tag1,//individualOrganism/identificationLabel,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
tag2,//individualOrganism/identificationLabel,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
10
tag1,//individualOrganism/identificationLabel/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
tag2,//individualOrganism/identificationLabel/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 12
x_position,/simpleUserdefined[name=xPosition]/value,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 13
y_position,/simpleUserdefined[name=yPosition]/value,Brad: See comment above for x_position
14 14
voucher_string,,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
mappings/for_review/SALVIAS-VegBank.organisms.csv
16 16
stem_liana_infestation,"//stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=stemLianaInfestation]]/definedValue",Brad: Should also be userDefined for VegBank. 
17 17
stem_tag1,//stemLocation/stemCode,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
18 18
stem_tag2,//stemLocation/stemCode,Brad: see above
19
tag1,//stemLocation/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
20
tag2,//stemLocation/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
19
tag2,//stemLocation/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
20
tag1,//stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
21 21
x_position,//stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
22 22
y_position,//stemLocation/stemYPosition,Brad: See comment above for x_position
23 23
coll_number,/taxonInterpretation[roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
mappings/for_review/SALVIAS_db-VegX.organisms.csv
8 8
Line,,
9 9
Ind,/simpleUserdefined[name=individualCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
10 10
ind_id,,Brad: OMIT
11
tag1,//individualOrganism/identificationLabel,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12
tag2,//individualOrganism/identificationLabel,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
11
tag1,//individualOrganism/identificationLabel/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12
tag2,//individualOrganism/identificationLabel/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
13 13
x_position,/simpleUserdefined[name=xPosition]/value,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
14 14
y_position,/simpleUserdefined[name=yPosition]/value,Brad: See comment above for x_position
15 15
dist,,
mappings/for_review/SALVIAS-VegBIEN.organisms.csv
13 13
stem_liana_infestation,"//individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=stemLianaInfestation]]/definedValue",Brad: Should also be userDefined for VegBank. 
14 14
stem_tag1,//individual/stemCode,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
15 15
stem_tag2,//individual/stemCode,Brad: see above
16
tag1,//individual/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
17
tag2,//individual/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
16
tag2,//individual/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
17
tag1,//individual/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
18 18
x_position,//individual/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
19 19
y_position,//individual/stemYPosition,Brad: See comment above for x_position
20 20
stem_dbh,//stemCount/stemDiameter,
mappings/for_review/SALVIAS_db-VegBank.organisms.csv
7 7
temp_dbh,//stemCount/stemDiameter,
8 8
height_m,//stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
9 9
ht_first_branch_m,"//stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=heightFirstBranchM]]/definedValue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
10
tag1,//stemLocation/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
tag2,//stemLocation/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
10
tag2,//stemLocation/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
11
tag1,//stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 12
x_position,//stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 13
y_position,//stemLocation/stemYPosition,Brad: See comment above for x_position
14 14
coll_number,/taxonInterpretation[roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
mappings/SALVIAS-VegBank.organisms.csv
16 16
stem_liana_infestation,"/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=stemLianaInfestation]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue",Brad: Should also be userDefined for VegBank. 
17 17
stem_tag1,/taxonImportance/stemCount/stemLocation/stemCode,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
18 18
stem_tag2,/taxonImportance/stemCount/stemLocation/stemCode,Brad: see above
19
tag1,/taxonImportance/stemCount/stemLocation/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
20
tag2,/taxonImportance/stemCount/stemLocation/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
19
tag2,/taxonImportance/stemCount/stemLocation/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
20
tag1,/taxonImportance/stemCount/stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
21 21
x_position,/taxonImportance/stemCount/stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
22 22
y_position,/taxonImportance/stemCount/stemLocation/stemYPosition,Brad: See comment above for x_position
23 23
coll_number,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
mappings/SALVIAS_db-VegX.organisms.csv
8 8
"Line",,
9 9
"Ind","/simpleUserdefined[name=individualCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
10 10
"ind_id",,"Brad: OMIT"
11
"tag1","/*ID->/*s/individualOrganism/identificationLabel","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12
"tag2","/*ID->/*s/individualOrganism/identificationLabel","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
11
"tag1","/*ID->/*s/individualOrganism/identificationLabel/_alt/2","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12
"tag2","/*ID->/*s/individualOrganism/identificationLabel/_alt/1","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
13 13
"x_position","/simpleUserdefined[name=xPosition]/value","Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
14 14
"y_position","/simpleUserdefined[name=yPosition]/value","Brad: See comment above for x_position"
15 15
"dist",,
mappings/SALVIAS-VegBIEN.organisms.csv
13 13
stem_liana_infestation,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=stemLianaInfestation]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue",Brad: Should also be userDefined for VegBank. 
14 14
stem_tag1,/collectiveobs/stemCount/individual/stemCode,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
15 15
stem_tag2,/collectiveobs/stemCount/individual/stemCode,Brad: see above
16
tag1,/collectiveobs/stemCount/individual/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
17
tag2,/collectiveobs/stemCount/individual/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
16
tag2,/collectiveobs/stemCount/individual/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
17
tag1,/collectiveobs/stemCount/individual/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
18 18
x_position,/collectiveobs/stemCount/individual/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
19 19
y_position,/collectiveobs/stemCount/individual/stemYPosition,Brad: See comment above for x_position
20 20
stem_dbh,/collectiveobs/stemCount/stemDiameter,
mappings/SALVIAS_db-VegBank.organisms.csv
7 7
temp_dbh,/taxonImportance/stemCount/stemDiameter,
8 8
height_m,/taxonImportance/stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
9 9
ht_first_branch_m,"/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=heightFirstBranchM]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
10
tag1,/taxonImportance/stemCount/stemLocation/stemCode,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
tag2,/taxonImportance/stemCount/stemLocation/stemCode,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
10
tag2,/taxonImportance/stemCount/stemLocation/stemCode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
11
tag1,/taxonImportance/stemCount/stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 12
x_position,/taxonImportance/stemCount/stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 13
y_position,/taxonImportance/stemCount/stemLocation/stemYPosition,Brad: See comment above for x_position
14 14
coll_number,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string

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