Revision 3203
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.specimens.csv | ||
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| 1 |
UNCC[DwC],VegBIEN:/specimenreplicate,Comments,Order
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UNCC[DwC],"VegBIEN:/specimenreplicate:[./{.,*_id/locationevent/*_id/location}/datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]",Comments,Order
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| 2 | 2 |
county,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
| 3 | 3 |
state,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65 |
| 4 | 4 |
country,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
| ... | ... | |
| 7 | 7 |
collday,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
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| 8 | 8 |
collmonth,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
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| 9 | 9 |
collyear,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
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herbarium,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
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collectno,/collectionnumber/_alt/1/_alt/1,,22
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| 11 | 11 |
comment1,/description/_merge/1/_merge/1,, |
| 12 | 12 |
comment2,/description/_merge/1/_merge/2,, |
| 13 | 13 |
comment3,/description/_merge/1/_merge/3,, |
| ... | ... | |
| 25 | 25 |
collector1,/verbatimcollectorname/_merge/2,,23 |
| 26 | 26 |
collector2,/verbatimcollectorname/_merge/3,,23 |
| 27 | 27 |
collector3,/verbatimcollectorname/_merge/4,,23 |
| 28 |
herbarium,"/{collectioncode_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
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| 28 | 29 |
cultivated,"/{growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=],iscultivated/_map:[cultivated=t,wild=f,*=],isnative/_map:[native=t,exotic=f,*=]}/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,30
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collectno,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1/_alt/1,,22 |
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accession,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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accession,"/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
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| 31 | 31 |
filler,,"Where used, same as family" |
| 32 | 32 |
flower,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?" |
| 33 | 33 |
fruit,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?" |
Also available in: Unified diff
VegBIEN: Fixing import issue related to duplicate entries in tables with children, where when a new table entry duplicates an existing entry, the 1:1 tables of that table and those tables' children are not merged, causing them to become orphaned. It is described in detail at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Import_issues#Merging-duplicates-with-children>, including the rationale for this solution. Note that this is not a bug in column-based import, it applies to row-based import as well. This commit fixes the issue for specimenreplicate->...->location, by also mapping specimenreplicate's unique keys to location.sourceaccessioncode and setting location.datasource_id.