Project

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1 3203 aaronmk
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","VegBIEN:/specimenreplicate:[./{.,*_id/locationevent/*_id/location}/datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]",Comments,Order
2 3199 aaronmk
coordinateUncertaintyInMeters,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
3
coordinatePrecision,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
4
boundingBox,/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
5
footprintWKT,/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
6
county,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
7
state,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
8
stateProvince,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
9
country,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
10
continent,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
11
continentOcean,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
12
locality,/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
13
verbatimLocality,/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
14
habitat,"/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
15
minimumElevation,"/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
16
minimumElevationInMeters,"/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
17
maximumElevation,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
18
maximumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
19
decimalLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
20
latitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,81
21
verbatimLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,81
22
decimalLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
23
longitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,82
24
verbatimLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,82
25
maximumDepth,"/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
26
maximumDepthInMeters,"/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
27
minimumDepth,"/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
28
minimumDepthInMeters,"/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
29
eventDate/_alt,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
30
dayCollected,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
31
monthCollected,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
32
yearCollected,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
33
eventDate,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
34
collectedDate,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
35 3203 aaronmk
collectorNumber,/collectionnumber/_alt/1/_alt/1,,22
36
recordNumber,/collectionnumber/_alt/1/_alt/2,,22
37
collectionID,/collectionnumber/_alt/2,,9
38
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
39 1452 aaronmk
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
40
fieldNotes,/description/_merge/1,,
41
notes,/description/_merge/1,,
42
remarks,/description/_merge/2,,158
43
taxonRemarks,/description/_merge/2,,158
44 3199 aaronmk
dateIdentified/_alt,/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
45
dayIdentified,"/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
46
monthIdentified,"/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
47
yearIdentified,"/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
48
dateIdentified,/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120
49
identifiedDate,/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120
50
identifiedBy,"/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
51
scientificName,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
52
scientificNameAuthor,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
53
scientificNameAuthorship,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
54
infraspecificEpithet,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
55
subspecies,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
56
species,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
57
specificEpithet,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
58
genus,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
59
family,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
60
order,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
61
class,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
62
phylum,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
63
kingdom,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
64
collector,/verbatimcollectorname,,23
65
recordedBy,/verbatimcollectorname,,23
66 3203 aaronmk
institutionID,"/{.,*_id/locationevent/*_id/location}/datasource_id/party/organizationname/_alt/1",,8
67
catalogNumber,"/{catalognumber_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/3}","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
68
collectionCode,"/{collectioncode_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
69 3199 aaronmk
establishmentMeans,"/{growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=],iscultivated/_map:[cultivated=t,wild=f,*=],isnative/_map:[native=t,exotic=f,*=]}/value",,30
70 3203 aaronmk
institutionCode,"/{institution_id/party/organizationname,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/1}",,
71
globalUniqueIdentifier,"/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
72
id,"/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
73
occurrenceID,"/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
74 1452 aaronmk
acceptedNameUsage,,,135
75
acceptedNameUsageID,,,128
76 1802 aaronmk
accessRights,,** No non-empty join mapping for dcterms:accessRights ** Versions without namespace
77 1452 aaronmk
associatedMedia,,,36
78
associatedOccurrences,,,38
79
associatedReferences,,,37
80
associatedSequences,,,39
81
associatedTaxa,,,40
82
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
83
bed,,,117
84
behavior,,,29
85 1802 aaronmk
bibliographicCitation,,** No non-empty join mapping for dcterms:bibliographicCitation ** Versions without namespace
86 1452 aaronmk
countryCode,,,64
87
dataGeneralizations,,,17
88
datasetID,,,10
89
datasetName,,,13
90 1802 aaronmk
dateLastModified,,** No non-empty join mapping for dcterms:modified **
91 1452 aaronmk
day,,Brad: OMIT,50
92
dcterms:accessRights,,,5
93
dcterms:bibliographicCitation,,,6
94
dcterms:language,,,2
95
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
96
dcterms:references,,,7
97
dcterms:rights,,,3
98
dcterms:rightsHolder,,,4
99
dcterms:type,,,0
100
disposition,,,33
101
dynamicProperties,,,18
102
earliestAgeOrLowestStage,,,109
103
earliestEonOrLowestEonothem,,,101
104
earliestEpochOrLowestSeries,,,107
105
earliestEraOrLowestErathem,,,103
106
earliestPeriodOrLowestSystem,,,105
107
endDayOfYear,,,47
108
eventID,,,41
109
eventRemarks,,,55
110
eventTime,,Brad: OMIT,45
111
footprintSRS,,,92
112
footprintSpatialFit,,,93
113
formation,,,115
114
geodeticDatum,,,87
115
geologicalContextID,,,100
116
georeferenceProtocol,,,96
117
georeferenceRemarks,,,99
118
georeferenceSources,,,97
119
georeferenceVerificationStatus,,,98
120
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
121
georeferencedDate,,,95
122
group,,,114
123
higherClassification,,,141
124
higherGeography,,,58
125
higherGeographyID,,,57
126
highestBiostratigraphicZone,,,112
127
identificationID,,,118
128
identificationQualifier,,,124
129
identificationReferences,,,121
130
identificationRemarks,,,123
131
identificationVerificationStatus,,,122
132
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
133
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
134
informationWithheld,,,16
135
island,,,62
136
islandGroup,,,61
137 1802 aaronmk
julianDay,,** No non-empty join mapping for day **
138
language,,** No non-empty join mapping for dcterms:language ** Versions without namespace
139 1452 aaronmk
latestAgeOrHighestStage,,,110
140
latestEonOrHighestEonothem,,,102
141
latestEpochOrHighestSeries,,,108
142
latestEraOrHighestErathem,,,104
143
latestPeriodOrHighestSystem,,,106
144
lifeStage,,,27
145
lithostratigraphicTerms,,,113
146
locationAccordingTo,,,78
147
locationID,,,56
148
locationRemarks,,,79
149
lowestBiostratigraphicZone,,,111
150
maximumDistanceAboveSurfaceInMeters,,,77
151
measurementAccuracy,,,169
152
measurementDeterminedBy,,,172
153
measurementDeterminedDate,,,171
154
measurementID,,,166
155
measurementMethod,,,173
156
measurementRemarks,,,174
157
measurementType,,,167
158
measurementUnit,,,170
159
measurementValue,,,168
160
member,,,116
161
minimumDistanceAboveSurfaceInMeters,,,76
162 1802 aaronmk
modified,,** No non-empty join mapping for dcterms:modified ** Versions without namespace
163 1452 aaronmk
month,,,49
164
municipality,,,67
165
nameAccordingTo,,,138
166
nameAccordingToID,,,131
167
namePublishedIn,,,139
168
namePublishedInID,,,132
169
namePublishedInYear,,,140
170
nomenclaturalCode,,,155
171
nomenclaturalStatus,,,157
172
occurrenceRemarks,,,21
173
occurrenceStatus,,,31
174
originalNameUsage,,,137
175
originalNameUsageID,,,130
176
otherCatalogNumbers,,,34
177
ownerInstitutionCode,,,14
178
parentNameUsage,,,136
179
parentNameUsageID,,,129
180
pointRadiusSpatialFit,,,90
181 1802 aaronmk
preparation,,** No non-empty join mapping for preparations **
182
preparationType,,** No non-empty join mapping for preparations **
183 1452 aaronmk
preparations,,Brad: OMIT,32
184 1802 aaronmk
previousCatalogNumber,,** No non-empty join mapping for previousIdentifications ** ?
185 1452 aaronmk
previousIdentifications,,Brad: OMIT,35
186 1802 aaronmk
references,,** No non-empty join mapping for dcterms:references ** Versions without namespace
187
relatedCatalogItem,,** No non-empty join mapping for relatedResourceID **
188 1452 aaronmk
relatedResourceID,,Brad: OMIT,161
189
relationshipAccordingTo,,,163
190
relationshipEstablishedDate,,,164
191
relationshipOfResource,,Brad: OMIT,162
192
relationshipRemarks,,,165
193 1802 aaronmk
relationshipType,,** No non-empty join mapping for relationshipOfResource **
194 1452 aaronmk
reproductiveCondition,,,28
195
resourceID,,,160
196
resourceRelationshipID,,,159
197 1802 aaronmk
rights,,** No non-empty join mapping for dcterms:rights ** Versions without namespace
198
rightsHolder,,** No non-empty join mapping for dcterms:rightsHolder ** Versions without namespace
199 1452 aaronmk
samplingEffort,,,43
200
samplingProtocol,,,42
201
scientificNameID,,,127
202
startDayOfYear,,,46
203
subgenus,,,148
204
taxonConceptID,,,133
205
taxonID,,,126
206
taxonRank,,,151
207
taxonomicStatus,,,156
208 1802 aaronmk
timeOfDay,,** No non-empty join mapping for eventTime **
209
type,,** No non-empty join mapping for dcterms:type ** Versions without namespace
210 1452 aaronmk
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
211
verbatimCoordinateSystem,,,83
212
verbatimCoordinates,,,80
213
verbatimDepth,,,73
214
verbatimElevation,,,70
215
verbatimEventDate,,,51
216
verbatimSRS,,,84
217
verbatimTaxonRank,,,152
218
vernacularName,,,154
219
waterBody,,,60
220
year,,,48