Project

General

Profile

Download (11.1 KB) Statistics
| Revision:

root/mappings/for_review/DwC2-VegBIEN.specimens.csv @ 3258

1 3203 aaronmk 
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","VegBIEN:/specimenreplicate:[./{.,*_id/locationevent/*_id/location}/datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]",Comments,Order
2 2529 aaronmk 
coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
3 
coordinatePrecision,//locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
4 1323 aaronmk 
footprintWKT,//locationdetermination/footprintgeometry_dwc,,91
5 2529 aaronmk 
county,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
6 
stateProvince,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
7 
country,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
8 
continent,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
9 1207 aaronmk 
locality,//location/locationnarrative/_merge/1,,68
10 
verbatimLocality,//location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
11 
habitat,"//location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
12 3199 aaronmk 
minimumElevationInMeters,"/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value/_rangeStart/value,elevationrange/_range/to/_units/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
13 
maximumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units/value,elevationrange/_range/to/_units/value/_alt/1}",,72
14 
decimalLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf/value",,85
15 
verbatimLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf/value",,81
16 
decimalLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf/value",,86
17 
verbatimLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf/value",,82
18 1465 aaronmk 
maximumDepthInMeters,//locationevent/waterdepth/_avg/max/_units/value,,75
19 
minimumDepthInMeters,//locationevent/waterdepth/_avg/min/_units/value,,74
20 3199 aaronmk 
eventDate,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
21 3203 aaronmk 
recordNumber,/collectionnumber/_alt/1,,22
22 
collectionID,/collectionnumber/_alt/2,,9
23 
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
24 1222 aaronmk 
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
25 1396 aaronmk 
fieldNotes,/description/_merge/1,,
26 
taxonRemarks,/description/_merge/2,,158
27 3199 aaronmk 
dateIdentified,/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120
28 
identifiedBy,"/taxondetermination[role=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
29 
scientificName,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
30 
scientificNameAuthorship,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
31 
infraspecificEpithet,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
32 
specificEpithet,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
33 
genus,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
34 
family,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
35 
order,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
36 
class,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
37 
phylum,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
38 
kingdom,"/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
39 
recordedBy,/verbatimcollectorname,,23
40 3203 aaronmk 
institutionID,"/{.,*_id/locationevent/*_id/location}/datasource_id/party/organizationname/_alt/1",,8
41 
catalogNumber,"/{catalognumber_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/3}","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
42 
collectionCode,"/{collectioncode_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
43 3199 aaronmk 
establishmentMeans,"/{growthform/_map,iscultivated/_map,isnative/_map}/value",,30
44 3203 aaronmk 
institutionCode,"/{institution_id/party/organizationname,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/1}",,
45 
occurrenceID,"/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
46 1120 aaronmk 
acceptedNameUsage,,,135
47 
acceptedNameUsageID,,,128
48 
associatedMedia,,,36
49 
associatedOccurrences,,,38
50 
associatedReferences,,,37
51 
associatedSequences,,,39
52 
associatedTaxa,,,40
53 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
54 
bed,,,117
55 
behavior,,,29
56 
countryCode,,,64
57 
dataGeneralizations,,,17
58 
datasetID,,,10
59 
datasetName,,,13
60 
day,,Brad: OMIT,50
61 
dcterms:accessRights,,,5
62 
dcterms:bibliographicCitation,,,6
63 
dcterms:language,,,2
64 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
65 
dcterms:references,,,7
66 
dcterms:rights,,,3
67 
dcterms:rightsHolder,,,4
68 
dcterms:type,,,0
69 
disposition,,,33
70 
dynamicProperties,,,18
71 
earliestAgeOrLowestStage,,,109
72 
earliestEonOrLowestEonothem,,,101
73 
earliestEpochOrLowestSeries,,,107
74 
earliestEraOrLowestErathem,,,103
75 
earliestPeriodOrLowestSystem,,,105
76 
endDayOfYear,,,47
77 
eventID,,,41
78 
eventRemarks,,,55
79 
eventTime,,Brad: OMIT,45
80 
footprintSRS,,,92
81 
footprintSpatialFit,,,93
82 
formation,,,115
83 
geodeticDatum,,,87
84 
geologicalContextID,,,100
85 
georeferenceProtocol,,,96
86 
georeferenceRemarks,,,99
87 
georeferenceSources,,,97
88 
georeferenceVerificationStatus,,,98
89 
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
90 
georeferencedDate,,,95
91 
group,,,114
92 
higherClassification,,,141
93 
higherGeography,,,58
94 
higherGeographyID,,,57
95 
highestBiostratigraphicZone,,,112
96 
identificationID,,,118
97 
identificationQualifier,,,124
98 
identificationReferences,,,121
99 
identificationRemarks,,,123
100 
identificationVerificationStatus,,,122
101 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
102 
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
103 
informationWithheld,,,16
104 
island,,,62
105 
islandGroup,,,61
106 
latestAgeOrHighestStage,,,110
107 
latestEonOrHighestEonothem,,,102
108 
latestEpochOrHighestSeries,,,108
109 
latestEraOrHighestErathem,,,104
110 
latestPeriodOrHighestSystem,,,106
111 
lifeStage,,,27
112 
lithostratigraphicTerms,,,113
113 
locationAccordingTo,,,78
114 
locationID,,,56
115 
locationRemarks,,,79
116 
lowestBiostratigraphicZone,,,111
117 
maximumDistanceAboveSurfaceInMeters,,,77
118 
measurementAccuracy,,,169
119 
measurementDeterminedBy,,,172
120 
measurementDeterminedDate,,,171
121 
measurementID,,,166
122 
measurementMethod,,,173
123 
measurementRemarks,,,174
124 
measurementType,,,167
125 
measurementUnit,,,170
126 
measurementValue,,,168
127 
member,,,116
128 
minimumDistanceAboveSurfaceInMeters,,,76
129 
month,,,49
130 
municipality,,,67
131 
nameAccordingTo,,,138
132 
nameAccordingToID,,,131
133 
namePublishedIn,,,139
134 
namePublishedInID,,,132
135 
namePublishedInYear,,,140
136 
nomenclaturalCode,,,155
137 
nomenclaturalStatus,,,157
138 
occurrenceRemarks,,,21
139 
occurrenceStatus,,,31
140 
originalNameUsage,,,137
141 
originalNameUsageID,,,130
142 
otherCatalogNumbers,,,34
143 
ownerInstitutionCode,,,14
144 
parentNameUsage,,,136
145 
parentNameUsageID,,,129
146 
pointRadiusSpatialFit,,,90
147 
preparations,,Brad: OMIT,32
148 
previousIdentifications,,Brad: OMIT,35
149 
relatedResourceID,,Brad: OMIT,161
150 
relationshipAccordingTo,,,163
151 
relationshipEstablishedDate,,,164
152 
relationshipOfResource,,Brad: OMIT,162
153 
relationshipRemarks,,,165
154 
reproductiveCondition,,,28
155 
resourceID,,,160
156 
resourceRelationshipID,,,159
157 
samplingEffort,,,43
158 
samplingProtocol,,,42
159 
scientificNameID,,,127
160 
startDayOfYear,,,46
161 
subgenus,,,148
162 
taxonConceptID,,,133
163 
taxonID,,,126
164 
taxonRank,,,151
165 
taxonomicStatus,,,156
166 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
167 
verbatimCoordinateSystem,,,83
168 
verbatimCoordinates,,,80
169 
verbatimDepth,,,73
170 
verbatimElevation,,,70
171 
verbatimEventDate,,,51
172 
verbatimSRS,,,84
173 
verbatimTaxonRank,,,152
174 
vernacularName,,,154
175 
waterBody,,,60
176 
year,,,48