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1
# Database import/export
2

    
3
import exc
4
import dicts
5
import sql
6
import sql_gen
7
import strings
8
import util
9

    
10
##### Data cleanup
11

    
12
def cleanup_table(db, table, cols):
13
    table = sql_gen.as_Table(table)
14
    cols = map(sql_gen.as_Col, cols)
15
    
16
    expr = ('nullif(nullif(trim(both from %s), '+db.esc_value('')+'), '
17
        +db.esc_value(r'\N')+')')
18
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db)))
19
        for v in cols]
20
    
21
    sql.update(db, table, changes, in_place=True)
22

    
23
##### Error tracking
24

    
25
def track_data_error(db, errors_table, cols, value, error_code, error):
26
    '''
27
    @param errors_table If None, does nothing.
28
    '''
29
    if errors_table == None or cols == (): return
30
    
31
    for col in cols:
32
        try:
33
            sql.insert(db, errors_table, dict(column=col.name, value=value,
34
                error_code=error_code, error=error), recover=True,
35
                cacheable=True, log_level=4)
36
        except sql.DuplicateKeyException: pass
37

    
38
def cast(db, type_, col, errors_table=None):
39
    '''Casts an (unrenamed) column or value.
40
    If errors_table set and col has srcs, saves errors in errors_table (using
41
    col's srcs attr as source columns). Otherwise, converts errors to warnings.
42
    @param col str|sql_gen.Col|sql_gen.Literal
43
    @param errors_table None|sql_gen.Table|str
44
    '''
45
    col = sql_gen.as_Col(col)
46
    
47
    # Don't convert exceptions to warnings for user-supplied constants
48
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
49
    
50
    assert not isinstance(col, sql_gen.NamedCol)
51
    
52
    save_errors = (errors_table != None and isinstance(col, sql_gen.Col)
53
        and col.srcs != ())
54
    function_name = type_
55
    if save_errors:
56
        errors_table = sql_gen.as_Table(errors_table)
57
        
58
        srcs = map(sql_gen.to_name_only_col, col.srcs)
59
        function_name = str(sql_gen.FunctionCall(function_name, *srcs))
60
    function = db.TempFunction(function_name)
61
    
62
    while True:
63
        # Create function definition
64
        query = '''\
65
CREATE FUNCTION '''+function.to_str(db)+'''(value text)
66
RETURNS '''+type_+'''
67
LANGUAGE plpgsql
68
'''
69
        if not save_errors: query += 'IMMUTABLE '
70
        query += '''\
71
STRICT
72
AS $$
73
BEGIN
74
    /* The explicit cast to the return type is needed to make the cast happen
75
    inside the try block. (Implicit casts to the return type happen at the end
76
    of the function, outside any block.) */
77
    RETURN value::'''+type_+''';
78
EXCEPTION
79
    WHEN data_exception THEN
80
'''
81
        if save_errors:
82
            errors_table_cols = map(sql_gen.Col,
83
                ['column', 'value', 'error_code', 'error'])
84
            query += '''\
85
        -- Save error in errors table.
86
        DECLARE
87
            error_code text := SQLSTATE;
88
            error text := SQLERRM;
89
            "column" text;
90
        BEGIN
91
            -- Insert the value and error for *each* source column.
92
            FOR "column" IN
93
'''+sql.mk_select(db, sql_gen.NamedValues('c', None, [[c.name] for c in srcs]),
94
    order_by=None)+'''
95
            LOOP
96
                BEGIN
97
'''+sql.mk_insert_select(db, errors_table, errors_table_cols,
98
    sql_gen.Values(errors_table_cols).to_str(db))+''';
99
                EXCEPTION
100
                    WHEN unique_violation THEN NULL; -- continue to next row
101
                END;
102
            END LOOP;
103
        END;
104
'''
105
        else:
106
            query += '''\
107
        RAISE WARNING '%', SQLERRM;
108
'''
109
        query += '''\
110
        RETURN NULL;
111
END;
112
$$;
113
'''
114
        
115
        # Create function
116
        try:
117
            sql.run_query(db, query, recover=True, cacheable=True,
118
                log_ignore_excs=(sql.DuplicateException,))
119
            break # successful
120
        except sql.DuplicateException:
121
            function.name = sql.next_version(function.name)
122
            # try again with next version of name
123
    
124
    return sql_gen.FunctionCall(function, col)
125

    
126
def cast_temp_col(db, type_, col, errors_table=None):
127
    '''Like cast(), but creates a new column with the cast values if the input
128
    is a column.
129
    @return The new column or cast value
130
    '''
131
    def cast_(col): return cast(db, type_, col, errors_table)
132
    
133
    try: col = sql_gen.underlying_col(col)
134
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
135
    
136
    table = col.table
137
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
138
    expr = cast_(col)
139
    
140
    # Add column
141
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
142
    sql.add_col(db, table, new_typed_col, comment=repr(col)+'::'+type_)
143
    new_col.name = new_typed_col.name # propagate any renaming
144
    
145
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
146
    
147
    return new_col
148

    
149
def errors_table(db, table, if_exists=True):
150
    '''
151
    @param if_exists If set, returns None if the errors table doesn't exist
152
    @return None|sql_gen.Table
153
    '''
154
    table = sql_gen.as_Table(table)
155
    if table.srcs != (): table = table.srcs[0]
156
    
157
    errors_table = sql_gen.suffixed_table(table, '.errors')
158
    if if_exists and not sql.table_exists(db, errors_table): return None
159
    return errors_table
160

    
161
##### Import
162

    
163
def put(db, table, row, pkey_=None, row_ct_ref=None):
164
    '''Recovers from errors.
165
    Only works under PostgreSQL (uses INSERT RETURNING).
166
    '''
167
    row = sql_gen.ColDict(db, table, row)
168
    if pkey_ == None: pkey_ = sql.pkey(db, table, recover=True)
169
    
170
    try:
171
        cur = sql.insert(db, table, row, pkey_, recover=True, log_level=3.5)
172
        if row_ct_ref != None and cur.rowcount >= 0:
173
            row_ct_ref[0] += cur.rowcount
174
        return sql.value(cur)
175
    except sql.DuplicateKeyException, e:
176
        row = sql_gen.ColDict(db, table,
177
            util.dict_subset_right_join(row, e.cols))
178
        return sql.value(sql.select(db, table, [pkey_], row, recover=True,
179
            log_level=3.5))
180
    except sql.NullValueException: return None
181

    
182
def get(db, table, row, pkey, row_ct_ref=None, create=False):
183
    '''Recovers from errors'''
184
    try:
185
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
186
            recover=True))
187
    except StopIteration:
188
        if not create: raise
189
        return put(db, table, row, pkey, row_ct_ref) # insert new row
190

    
191
def is_func_result(col):
192
    return col.table.name.find('(') >= 0 and col.name == 'result'
193

    
194
def into_table_name(out_table, in_tables0, mapping, is_func):
195
    def in_col_str(in_col):
196
        in_col = sql_gen.remove_col_rename(in_col)
197
        if isinstance(in_col, sql_gen.Col):
198
            table = in_col.table
199
            if table == in_tables0:
200
                in_col = sql_gen.to_name_only_col(in_col)
201
            elif is_func_result(in_col): in_col = table # omit col name
202
        return str(in_col)
203
    
204
    str_ = str(out_table)
205
    if is_func:
206
        str_ += '('
207
        
208
        try: value_in_col = mapping['value']
209
        except KeyError:
210
            str_ += ', '.join((str(k)+'='+in_col_str(v)
211
                for k, v in mapping.iteritems()))
212
        else: str_ += in_col_str(value_in_col)
213
        
214
        str_ += ')'
215
    else:
216
        out_col = 'rank'
217
        try: in_col = mapping[out_col]
218
        except KeyError: str_ += '_pkeys'
219
        else: # has a rank column, so hierarchical
220
            str_ += '['+str(out_col)+'='+in_col_str(in_col)+']'
221
    return str_
222

    
223
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, into=None,
224
    default=None, is_func=False, on_error=exc.raise_):
225
    '''Recovers from errors.
226
    Only works under PostgreSQL (uses INSERT RETURNING).
227
    IMPORTANT: Must be run at the *beginning* of a transaction.
228
    @param in_tables The main input table to select from, followed by a list of
229
        tables to join with it using the main input table's pkey
230
    @param mapping dict(out_table_col=in_table_col, ...)
231
        * out_table_col: str (*not* sql_gen.Col)
232
        * in_table_col: sql_gen.Col|literal-value
233
    @param into The table to contain the output and input pkeys.
234
        Defaults to `out_table.name+'_pkeys'`.
235
    @param default The *output* column to use as the pkey for missing rows.
236
        If this output column does not exist in the mapping, uses None.
237
    @param is_func Whether out_table is the name of a SQL function, not a table
238
    @return sql_gen.Col Where the output pkeys are made available
239
    '''
240
    out_table = sql_gen.as_Table(out_table)
241
    
242
    def log_debug(msg): db.log_debug(msg, level=1.5)
243
    def col_ustr(str_):
244
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
245
    
246
    log_debug('********** New iteration **********')
247
    log_debug('Inserting these input columns into '+strings.as_tt(
248
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
249
    
250
    is_function = sql.function_exists(db, out_table)
251
    
252
    if is_function: out_pkey = 'result'
253
    else: out_pkey = sql.pkey(db, out_table, recover=True)
254
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
255
    
256
    if mapping == {}: # need at least one column for INSERT SELECT
257
        mapping = {out_pkey: None} # ColDict will replace with default value
258
    
259
    # Create input joins from list of input tables
260
    in_tables_ = in_tables[:] # don't modify input!
261
    in_tables0 = in_tables_.pop(0) # first table is separate
262
    errors_table_ = errors_table(db, in_tables0)
263
    in_pkey = sql.pkey(db, in_tables0, recover=True)
264
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
265
    input_joins = [in_tables0]+[sql_gen.Join(v,
266
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
267
    
268
    if into == None:
269
        into = into_table_name(out_table, in_tables0, mapping, is_func)
270
    into = sql_gen.as_Table(into)
271
    
272
    # Set column sources
273
    in_cols = filter(sql_gen.is_table_col, mapping.values())
274
    for col in in_cols:
275
        if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
276
    
277
    log_debug('Joining together input tables into temp table')
278
    # Place in new table for speed and so don't modify input if values edited
279
    in_table = sql_gen.Table('in')
280
    mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
281
        in_cols, preserve=[in_pkey_col]))
282
    input_joins = [in_table]
283
    db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
284
    
285
    mapping = sql_gen.ColDict(db, out_table, mapping)
286
        # after applying dicts.join() because that returns a plain dict
287
    
288
    # Resolve default value column
289
    if default != None:
290
        try: default = mapping[default]
291
        except KeyError:
292
            db.log_debug('Default value column '
293
                +strings.as_tt(strings.repr_no_u(default))
294
                +' does not exist in mapping, falling back to None', level=2.1)
295
            default = None
296
    
297
    # Save default values for all rows since in_table may have rows deleted
298
    if is_function: full_in_table = in_table
299
    else:
300
        full_in_table = sql_gen.suffixed_table(in_table, '_full')
301
        full_in_table_cols = [in_pkey_col]
302
        if default != None:
303
            full_in_table_cols.append(default)
304
            default = sql_gen.with_table(default, full_in_table)
305
        sql.run_query_into(db, sql.mk_select(db, in_table, full_in_table_cols,
306
            order_by=None), into=full_in_table, add_pkey_=True)
307
    
308
    pkeys_names = [in_pkey, out_pkey]
309
    pkeys_cols = [in_pkey_col, out_pkey_col]
310
    
311
    pkeys_table_exists_ref = [False]
312
    def insert_into_pkeys(joins, cols, **kw_args):
313
        query = sql.mk_select(db, joins, cols, order_by=None)
314
        if pkeys_table_exists_ref[0]:
315
            sql.insert_select(db, into, pkeys_names, query, **kw_args)
316
        else:
317
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
318
            pkeys_table_exists_ref[0] = True
319
    
320
    limit_ref = [None]
321
    insert_in_table = in_table
322
    insert_in_tables = [insert_in_table]
323
    conds = set()
324
    join_cols = sql_gen.ColDict(db, out_table)
325
    distinct_on = sql_gen.ColDict(db, out_table)
326
    def mk_main_select(joins, cols):
327
        conds_ = [(sql_gen.with_table(k, insert_in_table), v) for k, v in conds]
328
        return sql.mk_select(db, joins, cols, conds_, limit=limit_ref[0],
329
            order_by=None)
330
    
331
    exc_strs = set()
332
    def log_exc(e):
333
        e_str = exc.str_(e, first_line_only=True)
334
        log_debug('Caught exception: '+e_str)
335
        assert e_str not in exc_strs # avoid infinite loops
336
        exc_strs.add(e_str)
337
    
338
    def remove_all_rows():
339
        log_debug('Ignoring all rows')
340
        limit_ref[0] = 0 # just create an empty pkeys table
341
    
342
    def ignore_cond(cond, e):
343
        out_table_cols = sql_gen.ColDict(db, out_table)
344
        out_table_cols.update(util.dict_subset_right_join({},
345
            sql.table_cols(db, out_table)))
346
        
347
        in_cols = []
348
        cond = sql.map_expr(db, cond, mapping, in_cols)
349
        cond = sql.map_expr(db, cond, out_table_cols)
350
        
351
        track_data_error(db, errors_table_, sql_gen.cols_srcs(in_cols), None,
352
            e.cause.pgcode,
353
            strings.ensure_newl(e.cause.pgerror)+'condition: '+cond)
354
        
355
        not_cond = sql_gen.NotCond(sql_gen.CustomCode(cond))
356
        log_debug('Ignoring rows where '+strings.as_tt(not_cond.to_str(db)))
357
        sql.delete(db, insert_in_table, not_cond)
358
    
359
    not_null_cols = set()
360
    def ignore(in_col, value, e):
361
        in_col = sql_gen.with_table(in_col, insert_in_table)
362
        
363
        track_data_error(db, errors_table_, in_col.srcs, value,
364
            e.cause.pgcode, e.cause.pgerror)
365
        log_debug('Ignoring rows with '+strings.as_tt(repr(in_col))+' = '
366
            +strings.as_tt(repr(value)))
367
        
368
        sql.add_index(db, in_col, insert_in_table) # enable fast filtering
369
        if value != None and in_col not in not_null_cols:
370
            # Try just mapping the value to NULL
371
            sql.update(db, insert_in_table, [(in_col, None)],
372
                sql_gen.ColValueCond(in_col, value))
373
        else:
374
            sql.delete(db, insert_in_table, sql_gen.ColValueCond(in_col, value))
375
            if value == None: not_null_cols.add(in_col)
376
    
377
    def insert_pkeys_table(which):
378
        return sql_gen.Table(sql_gen.concat(in_table.name,
379
            '_insert_'+which+'_pkeys'))
380
    insert_out_pkeys = insert_pkeys_table('out')
381
    insert_in_pkeys = insert_pkeys_table('in')
382
    
383
    # Do inserts and selects
384
    while True:
385
        if limit_ref[0] == 0: # special case
386
            log_debug('Creating an empty pkeys table')
387
            cur = sql.run_query_into(db, sql.mk_select(db, out_table,
388
                [out_pkey], order_by=None, limit=0), into=insert_out_pkeys)
389
            break # don't do main case
390
        
391
        has_joins = join_cols != {}
392
        
393
        log_debug('Trying to insert new rows')
394
        
395
        # Prepare to insert new rows
396
        if is_function:
397
            log_debug('Calling function on input rows')
398
            args = dict(((k.name, v) for k, v in mapping.iteritems()))
399
            func_call = sql_gen.NamedCol(out_pkey,
400
                sql_gen.FunctionCall(out_table, **args))
401
        else:
402
            insert_args = dict(recover=True, cacheable=False)
403
            if has_joins:
404
                insert_args.update(dict(ignore=True))
405
            else:
406
                insert_args.update(dict(returning=out_pkey,
407
                    into=insert_out_pkeys))
408
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
409
                c, insert_in_table) for c in mapping.values()])
410
        
411
        try:
412
            cur = None
413
            if is_function:
414
                insert_into_pkeys(input_joins, [in_pkey_col, func_call],
415
                    recover=True)
416
            else:
417
                cur = sql.insert_select(db, out_table, mapping.keys(),
418
                    main_select, **insert_args)
419
            break # insert successful
420
        except sql.MissingCastException, e:
421
            log_exc(e)
422
            
423
            out_col = e.col
424
            type_ = e.type
425
            
426
            log_debug('Casting '+strings.as_tt(out_col)+' input to '
427
                +strings.as_tt(type_))
428
            in_col = mapping[out_col]
429
            while True:
430
                try:
431
                    mapping[out_col] = cast_temp_col(db, type_, in_col,
432
                        errors_table_)
433
                    break # cast successful
434
                except sql.InvalidValueException, e:
435
                    log_exc(e)
436
                    
437
                    ignore(in_col, e.value, e)
438
        except sql.DuplicateKeyException, e:
439
            log_exc(e)
440
            
441
            # Different rows violating different unique constraints not
442
            # supported
443
            assert not join_cols
444
            assert not distinct_on
445
            
446
            distinct_on.update(util.dict_subset(mapping, e.cols))
447
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
448
            log_debug('Ignoring existing rows, comparing on these columns:\n'
449
                +strings.as_inline_table(join_cols, ustr=col_ustr))
450
            
451
            # Uniquify input table to avoid internal duplicate keys
452
            insert_in_table = sql.distinct_table(db, insert_in_table,
453
                join_cols.values())
454
            insert_in_tables.append(insert_in_table)
455
        except sql.NullValueException, e:
456
            log_exc(e)
457
            
458
            out_col, = e.cols
459
            try: in_col = mapping[out_col]
460
            except KeyError:
461
                msg = 'Missing mapping for NOT NULL column '+out_col
462
                log_debug(msg)
463
                if default == None: on_error(SyntaxError(msg)) # required col
464
                remove_all_rows()
465
            else: ignore(in_col, None, e)
466
        except sql.CheckException, e:
467
            log_exc(e)
468
            
469
            ignore_cond(e.cond, e)
470
        except sql.DatabaseErrors, e:
471
            log_exc(e)
472
            
473
            log_debug('No handler for exception')
474
            on_error(e)
475
            remove_all_rows()
476
        # after exception handled, rerun loop with additional constraints
477
    
478
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
479
        row_ct_ref[0] += cur.rowcount
480
    
481
    if is_function: pass # pkeys table already created
482
    elif has_joins:
483
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
484
        log_debug('Getting output table pkeys of existing/inserted rows')
485
        insert_into_pkeys(select_joins, pkeys_cols)
486
    else:
487
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
488
        
489
        log_debug('Getting input table pkeys of inserted rows')
490
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
491
        # since the SELECT query is identical to the one used in INSERT SELECT,
492
        # its rows will be retrieved in the same order.
493
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
494
            into=insert_in_pkeys)
495
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
496
        
497
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
498
            db, insert_in_pkeys)
499
        
500
        log_debug('Combining output and input pkeys in inserted order')
501
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
502
            {sql.row_num_col: sql_gen.join_same_not_null})]
503
        insert_into_pkeys(pkey_joins, pkeys_names)
504
        
505
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
506
    
507
    if not is_function:
508
        log_debug('Setting pkeys of missing rows to '
509
            +strings.as_tt(repr(default)))
510
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
511
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
512
            # must use join_same_not_null or query will take forever
513
        insert_into_pkeys(missing_rows_joins,
514
            [sql_gen.Col(in_pkey, full_in_table),
515
            sql_gen.NamedCol(out_pkey, default)])
516
    # otherwise, there is already an entry for every row
517
    
518
    assert (sql.table_row_count(db, into)
519
        == sql.table_row_count(db, full_in_table))
520
    
521
    sql.empty_temp(db, insert_in_tables+[full_in_table])
522
    
523
    srcs = []
524
    if is_func: srcs = sql_gen.cols_srcs(in_cols)
525
    return sql_gen.Col(out_pkey, into, srcs)
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