Revision 351
Added by Aaron Marcuse-Kubitza almost 13 years ago
mappings/VegX-VegBank.organisms.csv | ||
---|---|---|
70 | 70 |
/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/taxonImportance/stemCount/stemLocation/stemCode/_alt/2 |
71 | 71 |
/simpleUserdefined[name=xPosition]/value,/taxonImportance/stemCount/stemLocation/stemXPosition |
72 | 72 |
/simpleUserdefined[name=yPosition]/value,/taxonImportance/stemCount/stemLocation/stemYPosition |
73 |
/simpleUserdefined[name=collectionDate]/value,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionDate |
|
74 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date |
|
73 | 75 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber |
74 | 76 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}" |
75 | 77 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}" |
mappings/SALVIAS_db-VegBIEN.organisms.csv | ||
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1 | 1 |
SALVIAS:plotObservations,VegBIEN:/taxonoccurrence,Comments |
2 |
census_date,/*_ID/plotevent/obsStartDate/_date/year, |
|
3 | 2 |
PlotCode,"/*_ID/plotevent/{*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above" |
4 | 3 |
NoInd,/collectiveobs/*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
5 | 4 |
cover_percent,/collectiveobs/cover, |
... | ... | |
11 | 10 |
y_position,/collectiveobs/stemCount/individual/stemYPosition,Brad: See comment above for x_position |
12 | 11 |
temp_dbh,/collectiveobs/stemCount/stemDiameter, |
13 | 12 |
height_m,/collectiveobs/stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
13 |
census_date,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date, |
|
14 | 14 |
coll_number,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string |
15 | 15 |
coll_firstname,"/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above |
16 | 16 |
coll_lastname,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
mappings/VegX-VegBIEN.organisms.csv | ||
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70 | 70 |
/diameterBaseDistance[baseDistance=1.37]/diameter,/collectiveobs/stemCount/stemDiameter |
71 | 71 |
/height,/collectiveobs/stemCount/stemHeight |
72 | 72 |
/simpleUserdefined[name=stemHeightM]/value,/collectiveobs/stemCount/stemHeight |
73 |
/simpleUserdefined[name=collectionDate]/value,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate |
|
74 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date |
|
73 | 75 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber |
74 | 76 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}" |
75 | 77 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}" |
mappings/for_review/VegX-VegBank.organisms.csv | ||
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70 | 70 |
//individualOrganism/identificationLabel/_alt/2,//stemLocation/stemCode/_alt/2 |
71 | 71 |
/simpleUserdefined[name=xPosition]/value,//stemLocation/stemXPosition |
72 | 72 |
/simpleUserdefined[name=yPosition]/value,//stemLocation/stemYPosition |
73 |
/simpleUserdefined[name=collectionDate]/value,/taxonInterpretation[roleCode=collector]/collectionDate |
|
74 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxonInterpretation[roleCode=collector]/collectionDate/_date/date |
|
73 | 75 |
//taxonNameUsageConcept/authorCode,/taxonInterpretation[roleCode=collector]/collectionNumber |
74 | 76 |
//individualName/givenName,"/taxonInterpretation[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}" |
75 | 77 |
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxonInterpretation[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}" |
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv | ||
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1 | 1 |
SALVIAS:plotObservations,VegBIEN:/taxonoccurrence,Comments |
2 |
census_date,//plotevent/obsStartDate/_date/year, |
|
3 | 2 |
PlotCode,"/*_ID/plotevent/{*_ID/plot/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above" |
4 | 3 |
NoInd,//*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
5 | 4 |
cover_percent,//collectiveobs/cover, |
... | ... | |
11 | 10 |
y_position,//individual/stemYPosition,Brad: See comment above for x_position |
12 | 11 |
temp_dbh,//stemCount/stemDiameter, |
13 | 12 |
height_m,//stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
13 |
census_date,/taxondetermination[roleCode=collector]/collectionDate/_date/date, |
|
14 | 14 |
coll_number,/taxondetermination[roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string |
15 | 15 |
coll_firstname,"/taxondetermination[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above |
16 | 16 |
coll_lastname,/taxondetermination[roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
mappings/for_review/VegX-VegBIEN.organisms.csv | ||
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70 | 70 |
/diameterBaseDistance[baseDistance=1.37]/diameter,//stemCount/stemDiameter |
71 | 71 |
/height,//stemCount/stemHeight |
72 | 72 |
/simpleUserdefined[name=stemHeightM]/value,//stemCount/stemHeight |
73 |
/simpleUserdefined[name=collectionDate]/value,/taxondetermination[roleCode=collector]/collectionDate |
|
74 |
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxondetermination[roleCode=collector]/collectionDate/_date/date |
|
73 | 75 |
//taxonNameUsageConcept/authorCode,/taxondetermination[roleCode=collector]/collectionNumber |
74 | 76 |
//individualName/givenName,"/taxondetermination[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}" |
75 | 77 |
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}" |
mappings/for_review/SALVIAS_db-VegX.organisms.csv | ||
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3 | 3 |
PlotID,,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
4 | 4 |
PlotCode,//plot/plotUniqueIdentifier,"Brad: Same as plotCode, above" |
5 | 5 |
census_no,/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
6 |
census_date,//plotObservation/obsStartDate/_date/year,
|
|
6 |
census_date,/simpleUserdefined[name=collectionDate]/value/_date/date,
|
|
7 | 7 |
OrigRecordID,, |
8 | 8 |
Line,, |
9 | 9 |
Ind,/simpleUserdefined[name=individualCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
mappings/for_review/SALVIAS_db-VegBank.organisms.csv | ||
---|---|---|
1 | 1 |
SALVIAS:plotObservations,VegBank:/taxonObservation,Comments |
2 |
census_date,//observation/obsStartDate/_date/year, |
|
3 | 2 |
PlotCode,"/*_ID/observation/{*_ID/plot/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above" |
4 | 3 |
NoInd,//*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
5 | 4 |
cover_percent,//taxonImportance/cover, |
... | ... | |
11 | 10 |
tag1,//stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
12 | 11 |
x_position,//stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
13 | 12 |
y_position,//stemLocation/stemYPosition,Brad: See comment above for x_position |
13 |
census_date,/taxonInterpretation[roleCode=collector]/collectionDate/_date/date, |
|
14 | 14 |
coll_number,/taxonInterpretation[roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string |
15 | 15 |
coll_firstname,"/taxonInterpretation[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above |
16 | 16 |
coll_lastname,/taxonInterpretation[roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
mappings/SALVIAS_db-VegX.organisms.csv | ||
---|---|---|
3 | 3 |
"PlotID",,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
4 | 4 |
"PlotCode","/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
5 | 5 |
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
6 |
"census_date","/*ID->/*s/plotObservation/obsStartDate/_date/year",
|
|
6 |
"census_date","/simpleUserdefined[name=collectionDate]/value/_date/date",
|
|
7 | 7 |
"OrigRecordID",, |
8 | 8 |
"Line",, |
9 | 9 |
"Ind","/simpleUserdefined[name=individualCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
mappings/SALVIAS_db-VegBank.organisms.csv | ||
---|---|---|
1 | 1 |
SALVIAS:plotObservations,VegBank:/taxonObservation,Comments |
2 |
census_date,/*_ID/observation/obsStartDate/_date/year, |
|
3 | 2 |
PlotCode,"/*_ID/observation/{*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above" |
4 | 3 |
NoInd,/taxonImportance/*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
5 | 4 |
cover_percent,/taxonImportance/cover, |
... | ... | |
11 | 10 |
tag1,/taxonImportance/stemCount/stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
12 | 11 |
x_position,/taxonImportance/stemCount/stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
13 | 12 |
y_position,/taxonImportance/stemCount/stemLocation/stemYPosition,Brad: See comment above for x_position |
13 |
census_date,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date, |
|
14 | 14 |
coll_number,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string |
15 | 15 |
coll_firstname,"/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above |
16 | 16 |
coll_lastname,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
Also available in: Unified diff
VegX-VegBank organisms mapping: Added collectionDate mapping