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Revision 351

VegX-VegBank organisms mapping: Added collectionDate mapping

View differences:

mappings/VegX-VegBank.organisms.csv
70 70
/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/taxonImportance/stemCount/stemLocation/stemCode/_alt/2
71 71
/simpleUserdefined[name=xPosition]/value,/taxonImportance/stemCount/stemLocation/stemXPosition
72 72
/simpleUserdefined[name=yPosition]/value,/taxonImportance/stemCount/stemLocation/stemYPosition
73
/simpleUserdefined[name=collectionDate]/value,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionDate
74
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date
73 75
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber
74 76
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}"
75 77
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}"
mappings/SALVIAS_db-VegBIEN.organisms.csv
1 1
SALVIAS:plotObservations,VegBIEN:/taxonoccurrence,Comments
2
census_date,/*_ID/plotevent/obsStartDate/_date/year,
3 2
PlotCode,"/*_ID/plotevent/{*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above"
4 3
NoInd,/collectiveobs/*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
5 4
cover_percent,/collectiveobs/cover,
......
11 10
y_position,/collectiveobs/stemCount/individual/stemYPosition,Brad: See comment above for x_position
12 11
temp_dbh,/collectiveobs/stemCount/stemDiameter,
13 12
height_m,/collectiveobs/stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
13
census_date,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date,
14 14
coll_number,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
15 15
coll_firstname,"/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above
16 16
coll_lastname,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
mappings/VegX-VegBIEN.organisms.csv
70 70
/diameterBaseDistance[baseDistance=1.37]/diameter,/collectiveobs/stemCount/stemDiameter
71 71
/height,/collectiveobs/stemCount/stemHeight
72 72
/simpleUserdefined[name=stemHeightM]/value,/collectiveobs/stemCount/stemHeight
73
/simpleUserdefined[name=collectionDate]/value,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate
74
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date
73 75
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber
74 76
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}"
75 77
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}"
mappings/for_review/VegX-VegBank.organisms.csv
70 70
//individualOrganism/identificationLabel/_alt/2,//stemLocation/stemCode/_alt/2
71 71
/simpleUserdefined[name=xPosition]/value,//stemLocation/stemXPosition
72 72
/simpleUserdefined[name=yPosition]/value,//stemLocation/stemYPosition
73
/simpleUserdefined[name=collectionDate]/value,/taxonInterpretation[roleCode=collector]/collectionDate
74
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxonInterpretation[roleCode=collector]/collectionDate/_date/date
73 75
//taxonNameUsageConcept/authorCode,/taxonInterpretation[roleCode=collector]/collectionNumber
74 76
//individualName/givenName,"/taxonInterpretation[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}"
75 77
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxonInterpretation[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}"
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv
1 1
SALVIAS:plotObservations,VegBIEN:/taxonoccurrence,Comments
2
census_date,//plotevent/obsStartDate/_date/year,
3 2
PlotCode,"/*_ID/plotevent/{*_ID/plot/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above"
4 3
NoInd,//*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
5 4
cover_percent,//collectiveobs/cover,
......
11 10
y_position,//individual/stemYPosition,Brad: See comment above for x_position
12 11
temp_dbh,//stemCount/stemDiameter,
13 12
height_m,//stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
13
census_date,/taxondetermination[roleCode=collector]/collectionDate/_date/date,
14 14
coll_number,/taxondetermination[roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
15 15
coll_firstname,"/taxondetermination[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above
16 16
coll_lastname,/taxondetermination[roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
mappings/for_review/VegX-VegBIEN.organisms.csv
70 70
/diameterBaseDistance[baseDistance=1.37]/diameter,//stemCount/stemDiameter
71 71
/height,//stemCount/stemHeight
72 72
/simpleUserdefined[name=stemHeightM]/value,//stemCount/stemHeight
73
/simpleUserdefined[name=collectionDate]/value,/taxondetermination[roleCode=collector]/collectionDate
74
/simpleUserdefined[name=collectionDate]/value/_date/date,/taxondetermination[roleCode=collector]/collectionDate/_date/date
73 75
//taxonNameUsageConcept/authorCode,/taxondetermination[roleCode=collector]/collectionNumber
74 76
//individualName/givenName,"/taxondetermination[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}"
75 77
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}"
mappings/for_review/SALVIAS_db-VegX.organisms.csv
3 3
PlotID,,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 4
PlotCode,//plot/plotUniqueIdentifier,"Brad: Same as plotCode, above"
5 5
census_no,/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
6
census_date,//plotObservation/obsStartDate/_date/year,
6
census_date,/simpleUserdefined[name=collectionDate]/value/_date/date,
7 7
OrigRecordID,,
8 8
Line,,
9 9
Ind,/simpleUserdefined[name=individualCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
mappings/for_review/SALVIAS_db-VegBank.organisms.csv
1 1
SALVIAS:plotObservations,VegBank:/taxonObservation,Comments
2
census_date,//observation/obsStartDate/_date/year,
3 2
PlotCode,"/*_ID/observation/{*_ID/plot/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above"
4 3
NoInd,//*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
5 4
cover_percent,//taxonImportance/cover,
......
11 10
tag1,//stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 11
x_position,//stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 12
y_position,//stemLocation/stemYPosition,Brad: See comment above for x_position
13
census_date,/taxonInterpretation[roleCode=collector]/collectionDate/_date/date,
14 14
coll_number,/taxonInterpretation[roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
15 15
coll_firstname,"/taxonInterpretation[roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above
16 16
coll_lastname,/taxonInterpretation[roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
mappings/SALVIAS_db-VegX.organisms.csv
3 3
"PlotID",,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 4
"PlotCode","/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above"
5 5
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
6
"census_date","/*ID->/*s/plotObservation/obsStartDate/_date/year",
6
"census_date","/simpleUserdefined[name=collectionDate]/value/_date/date",
7 7
"OrigRecordID",,
8 8
"Line",,
9 9
"Ind","/simpleUserdefined[name=individualCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
mappings/SALVIAS_db-VegBank.organisms.csv
1 1
SALVIAS:plotObservations,VegBank:/taxonObservation,Comments
2
census_date,/*_ID/observation/obsStartDate/_date/year,
3 2
PlotCode,"/*_ID/observation/{*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above"
4 3
NoInd,/taxonImportance/*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
5 4
cover_percent,/taxonImportance/cover,
......
11 10
tag1,/taxonImportance/stemCount/stemLocation/stemCode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 11
x_position,/taxonImportance/stemCount/stemLocation/stemXPosition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 12
y_position,/taxonImportance/stemCount/stemLocation/stemYPosition,Brad: See comment above for x_position
13
census_date,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date,
14 14
coll_number,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string
15 15
coll_firstname,"/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above
16 16
coll_lastname,/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."

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