Revision 352
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/SALVIAS/map.VegBIEN.organisms.csv | ||
|---|---|---|
| 1 | 1 |
SALVIAS:plotObservations,VegBIEN:/taxonoccurrence,Comments |
| 2 |
census_date,/*_ID/plotevent/obsStartDate/_date/year, |
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| 3 | 2 |
PlotCode,"/*_ID/plotevent/{*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/2,authorObsCode}","Brad: Same as plotCode, above"
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| 4 |
NoInd,/collectiveobs/*/stemCount,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
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| 3 |
NoInd,/collectiveobs/*/stemCount/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
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| 5 | 4 |
cover_percent,/collectiveobs/cover, |
| 6 | 5 |
intercept_cm,"/collectiveobs/definedValue[*_ID/userDefined[tableName=collectiveobs,userDefinedName=interceptCm]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 7 | 6 |
ht_first_branch_m,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=heightFirstBranchM]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| ... | ... | |
| 11 | 10 |
y_position,/collectiveobs/stemCount/individual/stemYPosition,Brad: See comment above for x_position |
| 12 | 11 |
temp_dbh,/collectiveobs/stemCount/stemDiameter, |
| 13 | 12 |
height_m,/collectiveobs/stemCount/stemHeight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 13 |
census_date,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionDate/_date/date, |
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| 14 | 14 |
coll_number,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collectionNumber,Brad: Incorrect. Map instead as for voucher_string |
| 15 | 15 |
coll_firstname,"/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{givenName/_namePart/first,middleName/_namePart/last}",Brad: See comment above
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| 16 | 16 |
coll_lastname,/taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/collector_ID/party/{surName},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
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| ... | ... | |
| 27 | 27 |
infra_rank_1,"/taxondetermination[ROLE_ID/aux_Role/roleCode=computer,*_ID/plantConcept/plantStatus/plantLevel=Subspecies]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName/_name/first", |
| 28 | 28 |
infra_ep_1,"/taxondetermination[ROLE_ID/aux_Role/roleCode=computer,*_ID/plantConcept/plantStatus/plantLevel=Subspecies]:[interpretationType=""Computer (automated)"",originalInterpretation=false,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName/_name/last", |
| 29 | 29 |
OrigFamily,"/taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Family]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName",Brad: OMIT |
| 30 |
PlotObsID,"/{taxondetermination[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/plotevent/*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/3}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
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| 31 | 30 |
OrigSpecies,"/{taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName,taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept/*_ID/*/plantName/_alt/2}",Brad: OMIT
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PlotObsID,":[collectiveobs/*/stemCount/_alt/2=1]/{taxondetermination[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/plotevent/*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/3}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
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Also available in: Unified diff
VegX-VegBank organisms mapping: Added collectionDate mapping