| 1 |
3203
|
aaronmk
|
ARIZ[DwC],"VegBIEN:/specimenreplicate:[./{.,*_id/locationevent/*_id/location}/datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]",Comments,Order
|
| 2 |
3199
|
aaronmk
|
CoordinateUncertaintyInMeters,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
|
| 3 |
|
|
BoundingBox,/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
|
| 4 |
|
|
County,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
|
| 5 |
|
|
StateProvince,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
|
| 6 |
|
|
Country,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
|
| 7 |
|
|
ContinentOcean,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
|
| 8 |
|
|
Locality,/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
|
| 9 |
|
|
MinimumElevationInMeters,"/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
|
| 10 |
|
|
MaximumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
|
| 11 |
|
|
DecimalLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 12 |
|
|
VerbatimLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,81
|
| 13 |
|
|
DecimalLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 14 |
|
|
VerbatimLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,82
|
| 15 |
|
|
MaximumDepthInMeters,"/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
|
| 16 |
|
|
MinimumDepthInMeters,"/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
|
| 17 |
|
|
VerbatimCollectingDate,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/0",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 18 |
|
|
DayCollected,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 19 |
|
|
MonthCollected,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 20 |
|
|
YearCollected,"/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 21 |
3203
|
aaronmk
|
CollectorNumber,/collectionnumber/_alt/1/_alt/1,,22
|
| 22 |
|
|
FieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
|
| 23 |
1267
|
aaronmk
|
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
| 24 |
1280
|
aaronmk
|
FieldNotes,/description/_merge/1,,
|
| 25 |
1396
|
aaronmk
|
Remarks,/description/_merge/2,,158
|
| 26 |
3199
|
aaronmk
|
DayIdentified,"/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
| 27 |
|
|
MonthIdentified,"/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
| 28 |
|
|
YearIdentified,"/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
| 29 |
|
|
IdentifiedBy,"/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 30 |
|
|
ScientificNameAuthor,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/1","Contains the binomial in addition to the authority; Brad: Bob, Nick, please is this mapping OK?",134
|
| 31 |
|
|
ScientificName,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/2","Brad: Bob, Nick, please is this mapping OK?",134
|
| 32 |
|
|
Subspecies,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
|
| 33 |
|
|
Species,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
|
| 34 |
|
|
Genus,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
|
| 35 |
|
|
Family,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
|
| 36 |
|
|
Order,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
|
| 37 |
|
|
Class,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
|
| 38 |
|
|
Phylum,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
|
| 39 |
|
|
Kingdom,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
|
| 40 |
|
|
Collector,/verbatimcollectorname,,23
|
| 41 |
3203
|
aaronmk
|
CatalogNumberNumeric,"/{catalognumber_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/3}","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
|
| 42 |
|
|
CollectionCode,"/{collectioncode_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
|
| 43 |
|
|
InstitutionCode,"/{institution_id/party/organizationname,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/1}",,
|
| 44 |
|
|
GlobalUniqueIdentifier,"/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
|
| 45 |
1801
|
aaronmk
|
AgeClass,,** No non-empty join mapping for lifeStage **
|
| 46 |
|
|
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord **
|
| 47 |
1267
|
aaronmk
|
CatalogNumber,,Map to nothing so it doesn't overwrite CatalogNumberNumeric
|
| 48 |
1801
|
aaronmk
|
DateLastModified,,** No non-empty join mapping for DateLastModified **
|
| 49 |
|
|
GenBankNum,,"** No non-empty join mapping for associatedSequences/_label[label=""GenBank""]/value ** "
|
| 50 |
|
|
GeorefMethod,,** No non-empty join mapping for georeferenceProtocol **
|
| 51 |
|
|
HigherGeography,,** No non-empty join mapping for HigherGeography **
|
| 52 |
1279
|
aaronmk
|
HorizontalDatum,,Not used
|
| 53 |
1801
|
aaronmk
|
IdentificationModifier,,** No non-empty join mapping for identificationQualifier **
|
| 54 |
|
|
IndividualCount,,** No non-empty join mapping for IndividualCount **
|
| 55 |
|
|
Island,,** No non-empty join mapping for Island **
|
| 56 |
|
|
IslandGroup,,** No non-empty join mapping for IslandGroup **
|
| 57 |
|
|
JulianDay,,** No non-empty join mapping for JulianDay **
|
| 58 |
|
|
LatLongComments,,** No non-empty join mapping for georeferenceRemarks **
|
| 59 |
|
|
OriginalCoordinateSystem,,** No non-empty join mapping for verbatimSRS **
|
| 60 |
|
|
OtherCatalogNumbers,,** No non-empty join mapping for RelatedCatalogItem **
|
| 61 |
|
|
Preparations,,** No non-empty join mapping for Preparations **
|
| 62 |
|
|
RelatedCatalogedItems,,"** No non-empty join mapping for RelatedCatalogItem ** Used only when OtherCatalogNumbers is NULL, so _alt not needed"
|
| 63 |
|
|
TimeCollected,,** No non-empty join mapping for TimeOfDay **
|
| 64 |
1279
|
aaronmk
|
Tissues,,Not used
|
| 65 |
1801
|
aaronmk
|
TypeStatus,,** No non-empty join mapping for TypeStatus **
|
| 66 |
|
|
VerbatimDepth,,** No non-empty join mapping for VerbatimDepth **
|
| 67 |
|
|
VerbatimElevation,,** No non-empty join mapping for VerbatimElevation **
|
