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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 3546 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Full DB: Added vegbien.backup...
  bin 3669 over 12 years Aaron Marcuse-Kubitza bin/map: Call sys.stdout.flush() after every ca...
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 3683 over 12 years Aaron Marcuse-Kubitza mappings/VegX-VegBIEN.stems.csv: plot: Mapped note
  lib 3685 over 12 years Aaron Marcuse-Kubitza db_xml.py: put(): put_(): Removed no longer nee...
  mappings 3683 over 12 years Aaron Marcuse-Kubitza mappings/VegX-VegBIEN.stems.csv: plot: Mapped note
  schemas 3681 over 12 years Aaron Marcuse-Kubitza schemas/vegbank.ERD.pdf: Auto-repaired with Ado...
  to_do 2547 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect the mont...
Makefile 10.4 KB 3393 over 12 years Aaron Marcuse-Kubitza Moved archived imports and make targets to main...
README.TXT 7.55 KB 3674 over 12 years Aaron Marcuse-Kubitza README.TXT: Documented that the PostgreSQL serv...
map 1.22 KB 3475 over 12 years Aaron Marcuse-Kubitza root map: Run bin/map with a nice increment of ...

Latest revisions

# Date Author Comment
3685 07/30/2012 03:53 PM Aaron Marcuse-Kubitza

db_xml.py: put(): put_(): Removed no longer needed in_row_ct_ref param, which is only used by put_table(). Rewrapped function body.

3684 07/30/2012 03:46 PM Aaron Marcuse-Kubitza

sql_io.py: put_table(): ignore(): literals: Only replace invalid literal with NULL or remove row if that column actually contains the invalid value in question. This handles the case where all columns are being ignore()d because the specific column couldn't be identified, and this was not the invalid column.

3683 07/30/2012 03:02 PM Aaron Marcuse-Kubitza

mappings/VegX-VegBIEN.stems.csv: plot: Mapped note

3682 07/30/2012 02:32 PM Aaron Marcuse-Kubitza

mappings/VegX-VegBIEN.stems.csv: plot: Added landform mapping

3681 07/30/2012 02:24 PM Aaron Marcuse-Kubitza

schemas/vegbank.ERD.pdf: Auto-repaired with Adobe Reader so that the repair message doesn't pop up whenever it's opened

3680 07/30/2012 02:22 PM Aaron Marcuse-Kubitza

schemas: Added vegbank.ERD.pdf so the VegBank ERD is easily accessible when mapping

3679 07/30/2012 01:51 PM Aaron Marcuse-Kubitza

mappings/VegX-VegBIEN.stems.csv: project: Mapped sourceaccessioncode. This entailed adding a distinguishing suffix to the projectname input mapping.

3678 07/30/2012 01:31 PM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv, VegX-VegBIEN.stems.csv: Removed all manual mappings to datasource_id now that datasource_id is auto-populated, both on the VegBIEN output side and the DwC/VegX input side. This should greatly simplify many of the mappings!

3677 07/30/2012 12:11 PM Aaron Marcuse-Kubitza

db_xml.py: put(): Don't suppress exceptions thrown by sql_io.put_table() by passing them to on_error(), because some exceptions indicate unrecoverable database connection problems such as a broken connection, which should abort the import

3676 07/30/2012 11:52 AM Aaron Marcuse-Kubitza

db_xml.py: put(): Support datasets with no rows, where root.firstChild == None. Documented that to use an entire XML document, you need to pass root.firstChild rather than root.

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