Revision 3753
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/QMOR/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
QMOR[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
QMOR[DwC],DwC,Comments
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|
| 2 | 2 |
acceptedNameUsage,acceptedNameUsage |
| 3 | 3 |
basisOfRecord,basisOfRecord |
| 4 | 4 |
behavior,behavior |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
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| 1 |
DwC,VegBIEN:/specimenreplicate,Comments,Order
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| 2 | 2 |
coordinateUncertaintyInMeters,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
| 3 | 3 |
coordinatePrecision,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
| 4 | 4 |
footprintWKT,/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| mappings/for_review/DwC1-DwC2.specimens.csv | ||
|---|---|---|
| 1 |
"DwC1::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
DwC1,DwC,Comments
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|
| 2 | 2 |
continentOcean,continent, |
| 3 | 3 |
dateIdentified/_alt,dateIdentified/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
| 4 | 4 |
dayIdentified,dateIdentified/_alt/1/_date/day/_nullIf/value, |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
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| 1 |
DwC,VegBIEN:/specimenreplicate,Comments,Order
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|
| 2 | 2 |
CoordinateUncertaintyInMeters,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
| 3 | 3 |
coordinateUncertaintyInMeters,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
| 4 | 4 |
CoordinatePrecision,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
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| 1 |
DwC,VegBIEN:/specimenreplicate,Comments,Order
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|
| 2 | 2 |
coordinateUncertaintyInMeters,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
| 3 | 3 |
coordinatePrecision,/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
| 4 | 4 |
boundingBox,/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| inputs/MT/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
MT[DwC],DwC:/list/,Comments |
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| 1 |
MT[DwC],DwC,Comments |
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| inputs/MT/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
MT[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
MT[DwC],DwC,Comments
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| 2 | 2 |
basisOfRecord,basisOfRecord |
| 3 | 3 |
collectionCode,collectionCode |
| 4 | 4 |
collectionID,collectionID |
| inputs/XAL/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
"XAL[DwC,darwin:]:/content/record/",DwC:/list/,Comments |
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| 1 |
"XAL[DwC,darwin:]:/content/record/",DwC,Comments |
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| inputs/XAL/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
"XAL[DwC,darwin:]:/content/record/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
"XAL[DwC,darwin:]:/content/record/",DwC,Comments
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| 2 | 2 |
BasisOfRecord,BasisOfRecord |
| 3 | 3 |
CatalogNumber,CatalogNumber |
| 4 | 4 |
Class,Class |
| inputs/NY/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
NY[DwC],DwC:/list/,Comments
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| 1 |
NY[DwC],DwC,Comments |
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| 2 | 2 |
key,,Not used because UniqueNYInternalRecordNumber is a better pkey |
| 3 | 3 |
Locality,Locality/_merge/1, |
| 4 | 4 |
MinimumElevation,MinimumElevation/_nullIf:[null=.]/value, |
| inputs/NY/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
NY[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
NY[DwC],DwC,Comments
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| 2 | 2 |
BasisOfRecord,BasisOfRecord |
| 3 | 3 |
BoundingBox,BoundingBox |
| 4 | 4 |
CatalogNumber,CatalogNumber |
| inputs/UNCC/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
UNCC[DwC],DwC:/list/,Comments
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| 1 |
UNCC[DwC],DwC,Comments |
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| 2 | 2 |
accession,occurrenceID, |
| 3 | 3 |
herbarium,collectionCode, |
| 4 | 4 |
usdaRank,taxonRank/_alt/1, |
| inputs/UNCC/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
UNCC[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
UNCC[DwC],DwC,Comments
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| 2 | 2 |
collector,Collector/_merge/1, |
| 3 | 3 |
collector1,Collector/_merge/2, |
| 4 | 4 |
collector2,Collector/_merge/3, |
| inputs/ACAD/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
ACAD[DwC],DwC:/list/,Comments |
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| 1 |
ACAD[DwC],DwC,Comments |
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| inputs/ACAD/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
ACAD[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
ACAD[DwC],DwC,Comments
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| 2 | 2 |
basisOfRecord,basisOfRecord |
| 3 | 3 |
bibliographicCitation,bibliographicCitation |
| 4 | 4 |
catalogNumber,catalogNumber |
| inputs/REMIB/maps/DwC.specimens.csv | ||
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| 1 |
REMIB[DwC],DwC:/list/,Comments
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| 1 |
REMIB[DwC],DwC,Comments |
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| 2 | 2 |
acronym,collectionCode, |
| 3 | 3 |
accession_number,occurrenceID, |
| 4 | 4 |
long_deg,verbatimLongitude, |
| inputs/REMIB/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
REMIB[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
REMIB[DwC],DwC,Comments
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| 2 | 2 |
acronym,collectionCode, |
| 3 | 3 |
collector,collector |
| 4 | 4 |
country,country |
| inputs/U/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
U[DwC],DwC:/list/,Comments
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| 1 |
U[DwC],DwC,Comments |
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| 2 | 2 |
ID,GlobalUniqueIdentifier, |
| 3 | 3 |
Barcode,CatalogNumber, |
| 4 | 4 |
Collector,Collector/_merge/1, |
| inputs/U/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
U[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
U[DwC],DwC,Comments
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| 2 | 2 |
Barcode,CatalogNumber, |
| 3 | 3 |
Collector,Collector/_merge/1, |
| 4 | 4 |
Addcoll,Collector/_merge/2, |
| inputs/ARIZ/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
ARIZ[DwC],DwC:/list/,Comments
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| 1 |
ARIZ[DwC],DwC,Comments |
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| 2 | 2 |
CatalogNumber,,Map to nothing so it doesn't overwrite CatalogNumberNumeric |
| 3 | 3 |
CatalogNumberNumeric,CatalogNumber, |
| 4 | 4 |
TimeCollected,TimeOfDay, |
| inputs/ARIZ/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
ARIZ[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
ARIZ[DwC],DwC,Comments
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| 2 | 2 |
BasisOfRecord,BasisOfRecord |
| 3 | 3 |
BoundingBox,BoundingBox |
| 4 | 4 |
CatalogNumberNumeric,CatalogNumber, |
| inputs/GBIF/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
GBIF[DwC],DwC:/list/,Comments
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| 1 |
GBIF[DwC],DwC,Comments |
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| 2 | 2 |
LatestDateCollected,eventDate, |
| 3 | 3 |
InstitutionCD,InstitutionCode, |
| 4 | 4 |
CollectionCD,CollectionCode, |
| inputs/GBIF/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
GBIF[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
GBIF[DwC],DwC,Comments
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| 2 | 2 |
CatalogNO,CatalogNumber, |
| 3 | 3 |
CollectionCD,CollectionCode, |
| 4 | 4 |
Collector,Collector |
| inputs/NCU-NCSC/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
NCU-NCSC[DwC],DwC:/list/,Comments
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| 1 |
NCU-NCSC[DwC],DwC,Comments |
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| 2 | 2 |
Accession Number,occurrenceID, |
| 3 | 3 |
SeriesName,CollectionCode, |
| 4 | 4 |
Barcode,CatalogNumber, |
| inputs/NCU-NCSC/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
NCU-NCSC[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
NCU-NCSC[DwC],DwC,Comments
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| 2 | 2 |
Barcode,CatalogNumber, |
| 3 | 3 |
Collect Date,CollectedDate, |
| 4 | 4 |
SeriesName,CollectionCode, |
| inputs/SpeciesLink/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
"SpeciesLink[DwC,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",DwC:/list/,Comments
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| 1 |
"SpeciesLink[DwC,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",DwC,Comments |
|
| 2 | 2 |
AuthorYearOfScientificName,ScientificNameAuthor, |
| 3 | 3 |
ScientificNameAuthor,ScientificNameAuthor,`union` would otherwise remove this input name because it's been mapped to (renamed) above |
| 4 | 4 |
DayOfYear,JulianDay, |
| inputs/SpeciesLink/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
"SpeciesLink[DwC,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
"SpeciesLink[DwC,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",DwC,Comments
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| 2 | 2 |
BasisOfRecord,BasisOfRecord |
| 3 | 3 |
BoundingBox,BoundingBox |
| 4 | 4 |
CatalogNumber,CatalogNumber |
| inputs/MO/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
MO[DwC],DwC:/list/,Comments
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| 1 |
MO[DwC],DwC,Comments |
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| 2 | 2 |
convertednotes,notes, |
| inputs/MO/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 1 |
MO[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
MO[DwC],DwC,Comments
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| 2 | 2 |
BasisOfRecord,BasisOfRecord |
| 3 | 3 |
CatalogNumber,CatalogNumber |
| 4 | 4 |
CollectionCode,CollectionCode |
| inputs/QMOR/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 |
QMOR[DwC],DwC:/list/,Comments |
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| 1 |
QMOR[DwC],DwC,Comments |
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| mappings/DwC.self.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/"
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| 1 |
DwC,DwC
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| 2 | 2 |
AcceptedNameUsage,AcceptedNameUsage |
| 3 | 3 |
AcceptedNameUsageID,AcceptedNameUsageID |
| 4 | 4 |
AccessRights,AccessRights |
| mappings/roots/specimens.sh | ||
|---|---|---|
| 1 | 1 |
#!/bin/sh |
| 2 |
export out_root="DwC:/list/"
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| 2 |
export out_root="DwC" |
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| 3 | 3 |
export in_root_suffix="[DwC]" |
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
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| 1 |
DwC,VegBIEN:/specimenreplicate,Comments,Order
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| 2 | 2 |
coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
| 3 | 3 |
coordinatePrecision,//locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
| 4 | 4 |
footprintWKT,//locationdetermination/footprintgeometry_dwc,,91 |
| mappings/DwC1-DwC2.specimens.csv | ||
|---|---|---|
| 1 |
"DwC1::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",Comments
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| 1 |
DwC1,DwC,Comments
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| 2 | 2 |
continentOcean,continent, |
| 3 | 3 |
dateIdentified/_alt,dateIdentified/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
| 4 | 4 |
dayIdentified,"dateIdentified/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
Also available in: Unified diff
DwC mappings: Removed ':/list/' root (full version: '::[@xmlns:dcterms=http://purl.org/dc/terms/]/list/') from map spreadsheets to simplify the boilerplate in each file. Since intermediate DwC XML files no longer need to be produced for automated tests, these roots are not needed.