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Profile

1 3758 aaronmk
DwC,VegBIEN:,Comments,Order
2 3786 aaronmk
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,72
3 3812 aaronmk
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,71
4
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,71
5 3786 aaronmk
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,72
6 3812 aaronmk
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,71
7 3786 aaronmk
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
8
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
9
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,,91
10
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,85
11
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,81
12
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,86
13
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,82
14
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
15
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
16
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
17
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
18
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value,,44
19
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,,44
20
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
21
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
22
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1,,22
23
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,9
24
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
25
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
26
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,
27
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,158
28
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,30
29
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,
30
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,30
31
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,30
32
occurrenceID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
33
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120
34
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,119
35
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,119
36
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,119
37
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
38
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
39
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
40
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
41
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
42
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
43
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
44
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
45
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
46
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
47
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,23
48
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
49
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
50
locality,/location/locationnarrative/_merge/1,,68
51
verbatimLocality,/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
52
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
53
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
54
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,
55
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
56
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
57 896 aaronmk
acceptedNameUsage,,,135
58
acceptedNameUsageID,,,128
59
associatedMedia,,,36
60
associatedOccurrences,,,38
61
associatedReferences,,,37
62
associatedSequences,,,39
63
associatedTaxa,,,40
64
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
65
bed,,,117
66
behavior,,,29
67
countryCode,,,64
68
dataGeneralizations,,,17
69
datasetID,,,10
70
datasetName,,,13
71
day,,Brad: OMIT,50
72
dcterms:accessRights,,,5
73
dcterms:bibliographicCitation,,,6
74
dcterms:language,,,2
75
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
76
dcterms:references,,,7
77
dcterms:rights,,,3
78
dcterms:rightsHolder,,,4
79
dcterms:type,,,0
80
disposition,,,33
81
dynamicProperties,,,18
82
earliestAgeOrLowestStage,,,109
83
earliestEonOrLowestEonothem,,,101
84
earliestEpochOrLowestSeries,,,107
85
earliestEraOrLowestErathem,,,103
86
earliestPeriodOrLowestSystem,,,105
87
endDayOfYear,,,47
88
eventID,,,41
89
eventRemarks,,,55
90
eventTime,,Brad: OMIT,45
91
footprintSRS,,,92
92
footprintSpatialFit,,,93
93
formation,,,115
94
geodeticDatum,,,87
95
geologicalContextID,,,100
96
georeferenceProtocol,,,96
97
georeferenceRemarks,,,99
98
georeferenceSources,,,97
99
georeferenceVerificationStatus,,,98
100 915 aaronmk
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
101 896 aaronmk
georeferencedDate,,,95
102
group,,,114
103
higherClassification,,,141
104
higherGeography,,,58
105
higherGeographyID,,,57
106
highestBiostratigraphicZone,,,112
107
identificationID,,,118
108
identificationQualifier,,,124
109
identificationReferences,,,121
110
identificationRemarks,,,123
111
identificationVerificationStatus,,,122
112
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
113 915 aaronmk
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
114 896 aaronmk
informationWithheld,,,16
115 3678 aaronmk
institutionID,,,8
116 896 aaronmk
island,,,62
117
islandGroup,,,61
118
latestAgeOrHighestStage,,,110
119
latestEonOrHighestEonothem,,,102
120
latestEpochOrHighestSeries,,,108
121
latestEraOrHighestErathem,,,104
122
latestPeriodOrHighestSystem,,,106
123
lifeStage,,,27
124
lithostratigraphicTerms,,,113
125
locationAccordingTo,,,78
126
locationID,,,56
127
locationRemarks,,,79
128
lowestBiostratigraphicZone,,,111
129
maximumDistanceAboveSurfaceInMeters,,,77
130
measurementAccuracy,,,169
131
measurementDeterminedBy,,,172
132
measurementDeterminedDate,,,171
133
measurementID,,,166
134
measurementMethod,,,173
135
measurementRemarks,,,174
136
measurementType,,,167
137
measurementUnit,,,170
138
measurementValue,,,168
139
member,,,116
140
minimumDistanceAboveSurfaceInMeters,,,76
141
month,,,49
142
municipality,,,67
143
nameAccordingTo,,,138
144
nameAccordingToID,,,131
145
namePublishedIn,,,139
146
namePublishedInID,,,132
147
namePublishedInYear,,,140
148
nomenclaturalCode,,,155
149
nomenclaturalStatus,,,157
150
occurrenceRemarks,,,21
151
occurrenceStatus,,,31
152
originalNameUsage,,,137
153
originalNameUsageID,,,130
154
otherCatalogNumbers,,,34
155
ownerInstitutionCode,,,14
156
parentNameUsage,,,136
157
parentNameUsageID,,,129
158
pointRadiusSpatialFit,,,90
159
preparations,,Brad: OMIT,32
160
previousIdentifications,,Brad: OMIT,35
161
relatedResourceID,,Brad: OMIT,161
162
relationshipAccordingTo,,,163
163
relationshipEstablishedDate,,,164
164
relationshipOfResource,,Brad: OMIT,162
165
relationshipRemarks,,,165
166
reproductiveCondition,,,28
167
resourceID,,,160
168
resourceRelationshipID,,,159
169
samplingEffort,,,43
170
samplingProtocol,,,42
171
scientificNameID,,,127
172
startDayOfYear,,,46
173
subgenus,,,148
174
taxonConceptID,,,133
175
taxonID,,,126
176
taxonRank,,,151
177
taxonomicStatus,,,156
178
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
179
verbatimCoordinateSystem,,,83
180
verbatimCoordinates,,,80
181
verbatimDepth,,,73
182
verbatimElevation,,,70
183
verbatimEventDate,,,51
184
verbatimSRS,,,84
185
verbatimTaxonRank,,,152
186
vernacularName,,,154
187
waterBody,,,60
188
year,,,48