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Revision 3823

Added by Aaron Marcuse-Kubitza over 12 years ago

Added mappings/VegX-VegCSV.stems.csv. The initial version is autogenerated by joining the simplified VegBIEN XPaths of related maps.

View differences:

mappings/VegX-VegCSV.stems.csv
1 
VegX:,VegCSV[DwC],Comments,Order
2 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium,//*s/abioticObservation/magnesium
3 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen,//*s/abioticObservation/nitrogen
4 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,//*s/abioticObservation/ph
5 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus,//*s/abioticObservation/phosphorus
6 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,//*s/abioticObservation/potassium
7 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,//*s/aggregateOrganismObservation/*/aggregateValue/value
8 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,//*s/aggregateOrganismObservation/*/aggregateValue/value
9 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,//*s/communityDetermination/*s/communityConcept/commonName
10 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,//*s/communityDetermination/*s/communityConcept/name
11 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/height,//*s/individualOrganismObservation/height
12 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeX,//*s/individualOrganismObservation/relativePlotPosition/relativeX
13 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeY,//*s/individualOrganismObservation/relativePlotPosition/relativeY
14 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/value,//*s/individualOrganismObservation/volumeCanopy/value
15 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relativePlotPosition/relativeX,//*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relativePlotPosition/relativeX
16 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relativePlotPosition/relativeY,//*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relativePlotPosition/relativeY
17 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsEndDate,//*s/plotObservation/obsEndDate
18 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate,//*s/plotObservation/obsStartDate
19 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/temperature,//*s/plotObservation/temperature
20 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType",//*s/taxonDetermination[role=collector]/groupType
21 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,//abioticObservation/simpleUserdefined[name=acidity]/value
22 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,//abioticObservation/simpleUserdefined[name=base]/value
23 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,//abioticObservation/simpleUserdefined[name=calcium]/value
24 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,//abioticObservation/simpleUserdefined[name=carbon]/value
25 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,//abioticObservation/simpleUserdefined[name=cationExchangeCapacity]/value
26 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value,//abioticObservation/simpleUserdefined[name=clay]/value
27 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,//abioticObservation/simpleUserdefined[name=conductivity]/value
28 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value,//abioticObservation/simpleUserdefined[name=organic]/value
29 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value,//abioticObservation/simpleUserdefined[name=sand]/value
30 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value,//abioticObservation/simpleUserdefined[name=silt]/value
31 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,//abioticObservation/simpleUserdefined[name=sodium]/value
32 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,//abioticObservation/simpleUserdefined[name=texture]/value
33 
/*s/plot/geospatial/CoordinateUncertaintyInMeters,//geospatial/CoordinateUncertaintyInMeters
34 
/*s/plot/geospatial/DecimalLatitude,//geospatial/DecimalLatitude
35 
/*s/plot/geospatial/DecimalLongitude,//geospatial/DecimalLongitude
36 
/*s/plot/geospatial/maximumDepthInMeters,//geospatial/maximumDepthInMeters
37 
/*s/plot/geospatial/maximumElevationInMeters,//geospatial/maximumElevationInMeters
38 
/*s/plot/geospatial/minimumDepthInMeters,//geospatial/minimumDepthInMeters
39 
/*s/plot/geospatial/minimumElevationInMeters,//geospatial/minimumElevationInMeters
40 
/*s/plot/geospatial/verbatimElevation,//geospatial/verbatimElevation
41 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",//individualName/givenName
42 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName",//individualName/surName
43 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],//individualOrganism/identificationLabel[@id=1]
44 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],//individualOrganism/identificationLabel[@id=1]
45 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=2],//individualOrganism/identificationLabel[@id=2]
46 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2],//individualOrganism/identificationLabel[@id=2]
47 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,//individualOrganismObservation/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter
48 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,//individualOrganismObservation/diameterBaseDistance[baseDistance[]/value=1.37]/diameter
49 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,//individualOrganismObservation/diameterBaseDistance[value=0]/diameter
50 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=authorPlantCode]/value,//individualOrganismObservation/simpleUserdefined[name=authorPlantCode]/value
51 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,//individualOrganismObservation/simpleUserdefined[name=canopyForm]/value
52 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,//individualOrganismObservation/simpleUserdefined[name=canopyPosition]/value
53 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,//individualOrganismObservation/simpleUserdefined[name=censusNo]/value
54 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value,//individualOrganismObservation/simpleUserdefined[name=collectionDate]/value
55 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=growthForm]/value,//individualOrganismObservation/simpleUserdefined[name=growthForm]/value
56 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,//individualOrganismObservation/simpleUserdefined[name=heightFirstBranch]/value
57 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=height]/value,//individualOrganismObservation/simpleUserdefined[name=height]/value
58 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=height]/value,//individualOrganismObservation/simpleUserdefined[name=height]/value
59 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,//individualOrganismObservation/simpleUserdefined[name=lianaInfestation]/value
60 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,//individualOrganismObservation/simpleUserdefined[name=sourceAccessionCode]/value
61 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,//note/text
62 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,//ordinal/coverPercent
63 
/*s/plot/area,//plot/area
64 
/*s/plot/landform,//plot/landform
65 
/*s/plot/locationNarrative,//plot/locationNarrative
66 
/*s/plot/note,//plot/note
67 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,//plot/plotName
68 
/*s/plot/plotName,//plot/plotName
69 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,//plot/plotUniqueIdentifier
70 
/*s/plot/plotUniqueIdentifier,//plot/plotUniqueIdentifier
71 
/*s/plot/slopeAspect,//plot/slopeAspect
72 
/*s/plot/slopeGradient,//plot/slopeGradient
73 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=method]/*ID/method/name,//plotObservation/simpleUserdefined[name=method]/*ID/method/name
74 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=precipitation]/value,//plotObservation/simpleUserdefined[name=precipitation]/value
75 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],//project/title[@id=name]
76 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=sourceAccessionCode],//project/title[@id=sourceAccessionCode]
77 
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher,//taxonNameUsageConcept/voucher
78 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=cl])/tcs:Name",class,,144
79 
/*s/plot/location[placeType=continent]/placeName,continent,Brad: OMIT,59
80 
/*s/plot/location[placeType=country]/placeName,country,Brad: Required; reject record if this field NULL,63
81 
/*s/plot/location[placeType=county]/placeName,county,,66
82 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",family,,146
83 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",family,,146
84 
/*s/plot/geospatial/FootprintWKT,footprintWKT,,91
85 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name",genus,,147
86 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name",genus,,147
87 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ssp])/tcs:Name",infraspecificEpithet,,150
88 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name",infraspecificEpithet,,150
89 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank",infraspecificEpithet,,150
90 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=reg])/tcs:Name",kingdom,,142
91 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ord])/tcs:Name",order,,145
92 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=phyl_div])/tcs:Name",phylum,,143
93 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit",scientificName,"Brad: Bob, Nick, please is this mapping OK?",134
94 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name",scientificName,"Brad: Bob, Nick, please is this mapping OK?",134
95 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",scientificNameAuthorship,"Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
96 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",scientificNameAuthorship,"Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
97 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",specificEpithet,,149
98 
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",specificEpithet,,149
99 
/*s/plot/location[placeType=state]/placeName,stateProvince,,65
mappings/Makefile
3 3 

  		




  4
  4
  
    
##### Vars/functions


  		




  5
  5
  
    

  		




  
  6
  
    
# Make


  		




  
  7
  
    
SHELL := /bin/bash


  		




  
  8
  
    

  		




  6
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# Paths


  		




  7
  10
  
    
bin := ../bin


  		




  8
  11
  
    
inputCoreMaps := DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv\


  		




  ......




  26
  29
  
    

  		




  27
  30
  
    
##### General targets


  		




  28
  31
  
    

  		




  29
  
  
    
all: _always $(inputCoreMaps) dwc_maps self_maps ;


  		




  
  32
  
    
all: _always $(inputCoreMaps) dwc_maps vegcsv_maps self_maps ;


  		




  30
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  31
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clean: _always


  		




  32
  35
  
    
	$(RM) $(all)


  		




  ......




  92
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dwc_maps: _always $(dwcMaps) ;


  		




  93
  96
  
    

  		




  94
  97
  
    
all += $(dwcMaps)


  		




  
  98
  
    

  		




  
  99
  
    
##### VegCSV


  		




  
  100
  
    

  		




  
  101
  
    
vegcsvMaps :=


  		




  
  102
  
    

  		




  
  103
  
    
VegX-VegCSV.stems.csv: # initially autogenerated


  		




  
  104
  
    
	env only_one=1 $(bin)/join <for_review/VegX-VegBIEN.stems.csv \


  		




  
  105
  
    
for_review/VegBIEN-DwC2.specimens.csv\


  		




  
  106
  
    
|$(bin)/remove_empty\


  		




  
  107
  
    
|$(bin)/union VegX.self.stems.csv\


  		




  
  108
  
    
|$(bin)/union <(echo ',VegCSV[DwC]')\


  		




  
  109
  
    
|$(bin)/review 1\


  		




  
  110
  
    
|$(bin)/sort_map >$@


  		




  
  111
  
    
vegcsvMaps += VegX-VegCSV.stems.csv


  		




  
  112
  
    

  		




  
  113
  
    
vegcsv_maps: _always $(vegcsvMaps) ;


  		




  
  114
  
    

  		




  
  115
  
    
all += $(vegcsvMaps)


  		












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