Revision 3828
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 3 | 3 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 4 | 4 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9 |
| 5 | 5 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
| 6 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
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| 6 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
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|
| 7 | 7 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30 |
| 8 | 8 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30 |
| 9 | 9 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| ... | ... | |
| 11 | 11 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146 |
| 12 | 12 |
locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 13 | 13 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 14 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
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|
| 14 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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|
| 15 | 15 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 16 | 16 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| 17 | 17 |
countryCode,,** No non-empty join mapping for countryCode ** |
| inputs/XAL/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 22 | 22 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22 |
| 23 | 23 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 24 | 24 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 25 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,,
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| 26 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
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| 25 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
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| 26 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
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|
| 27 | 27 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120 |
| 28 | 28 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120 |
| 29 | 29 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120 |
| ... | ... | |
| 44 | 44 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75 |
| 45 | 45 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74 |
| 46 | 46 |
Locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 47 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
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| 47 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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|
| 48 | 48 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 49 | 49 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 50 | 50 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| inputs/NY/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 23 | 23 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22 |
| 24 | 24 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 25 | 25 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 26 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,,
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| 27 |
PlantFungusDescription,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,,
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| 28 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
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| 26 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,DwC,54
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| 27 |
PlantFungusDescription,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,DwC,54
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| 28 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
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| 29 | 29 |
UniqueNYInternalRecordNumber,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 30 | 30 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120 |
| 31 | 31 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120 |
| ... | ... | |
| 51 | 51 |
Vegetation,"/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value",,DwC,68 |
| 52 | 52 |
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52 |
| 53 | 53 |
UniqueNYInternalRecordNumber,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 54 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
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| 54 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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|
| 55 | 55 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 56 | 56 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 57 | 57 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| inputs/UNCC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 10 | 10 |
collyear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44 |
| 11 | 11 |
herbarium,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 12 | 12 |
collectno,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22 |
| 13 |
comment1,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,,
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| 14 |
comment2,/location/locationevent/specimenreplicate/description/_merge/1/_merge/2,,,
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| 15 |
comment3,/location/locationevent/specimenreplicate/description/_merge/1/_merge/3,,,
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| 16 |
comment4,/location/locationevent/specimenreplicate/description/_merge/1/_merge/4,,,
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| 17 |
campus,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",,,
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| 18 |
loanto,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",,,
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| 19 |
inorout,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",,,
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| 13 |
comment1,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,DwC,54
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| 14 |
comment2,/location/locationevent/specimenreplicate/description/_merge/1/_merge/2,,DwC,54
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| 15 |
comment3,/location/locationevent/specimenreplicate/description/_merge/1/_merge/3,,DwC,54
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| 16 |
comment4,/location/locationevent/specimenreplicate/description/_merge/1/_merge/4,,DwC,54
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| 17 |
campus,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",,DwC,54
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| 18 |
loanto,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",,DwC,54
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| 19 |
inorout,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",,DwC,54
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| 20 | 20 |
cultivated,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,DwC,30
|
| 21 | 21 |
cultivated,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,DwC,30 |
| 22 | 22 |
cultivated,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,DwC,30 |
| inputs/ACAD/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 11 | 11 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 12 | 12 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,DwC,22 |
| 13 | 13 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9 |
| 14 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
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| 14 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
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| 15 | 15 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 16 | 16 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,120 |
| 17 | 17 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| ... | ... | |
| 31 | 31 |
locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 32 | 32 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52 |
| 33 | 33 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 34 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
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| 34 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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| 35 | 35 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 36 | 36 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 37 | 37 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 10 | 10 |
Collyy,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44 |
| 11 | 11 |
Barcode,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 12 | 12 |
Number,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,DwC,22 |
| 13 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
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| 13 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
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| 14 | 14 |
ID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 15 | 15 |
Detyy,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120 |
| 16 | 16 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 27 | 27 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22 |
| 28 | 28 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 29 | 29 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 30 |
FieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
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| 30 |
FieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
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| 31 | 31 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 32 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
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| 32 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
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| 33 | 33 |
GlobalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 34 | 34 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120 |
| 35 | 35 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120 |
| ... | ... | |
| 52 | 52 |
MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74 |
| 53 | 53 |
Locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 54 | 54 |
GlobalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 55 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
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| 55 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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| 56 | 56 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 57 | 57 |
CatalogNumberNumeric,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 58 | 58 |
AgeClass,,** No non-empty join mapping for lifeStage ** |
| inputs/GBIF/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 15 | 15 |
LatestDateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,44 |
| 16 | 16 |
CatalogNO,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 17 | 17 |
CollectionCD,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 18 |
InstitutionCD,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 18 |
InstitutionCD,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 19 | 19 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| 20 | 20 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| 21 | 21 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| ... | ... | |
| 27 | 27 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146 |
| 28 | 28 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23 |
| 29 | 29 |
Locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 30 |
InstitutionCD,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 30 |
InstitutionCD,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 31 | 31 |
CollectionCD,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 32 | 32 |
CatalogNO,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 33 | 33 |
GBIFFamilyOriginal,,** No non-empty join mapping for originalNameUsage/_alt/2/_name/first ** DwC doesn't fully support taxonomic redeterminations |
| inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 53 | 53 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 54 | 54 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 55 | 55 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 56 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 56 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 57 | 57 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 58 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 59 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 58 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 59 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 60 | 60 |
GlobalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 61 | 61 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120 |
| 62 | 62 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120 |
| ... | ... | |
| 102 | 102 |
Locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 103 | 103 |
locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 104 | 104 |
GlobalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 105 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 106 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 105 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 106 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 107 | 107 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 108 | 108 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 109 | 109 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| inputs/MO/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 19 | 19 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 20 | 20 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 21 | 21 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22 |
| 22 |
convertednotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 23 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 22 |
convertednotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 23 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 24 | 24 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| 25 | 25 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| 26 | 26 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| ... | ... | |
| 33 | 33 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142 |
| 34 | 34 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23 |
| 35 | 35 |
Locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 36 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 36 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 37 | 37 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 38 | 38 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 39 | 39 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| inputs/QMOR/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 20 | 20 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 21 | 21 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9 |
| 22 | 22 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 23 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 23 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 24 | 24 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 25 | 25 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,120 |
| 26 | 26 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119 |
| ... | ... | |
| 40 | 40 |
locality,/location/locationnarrative/_merge/1,,DwC,68 |
| 41 | 41 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52 |
| 42 | 42 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 43 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 43 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 44 | 44 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 45 | 45 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 46 | 46 |
acceptedNameUsage,,** No non-empty join mapping for acceptedNameUsage ** |
| mappings/VegCSV-VegBIEN.specimens.csv | ||
|---|---|---|
| 64 | 64 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9 |
| 65 | 65 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 66 | 66 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 67 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 67 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 68 | 68 |
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 69 | 69 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
| 70 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 70 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 71 | 71 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30 |
| 72 | 72 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30 |
| 73 | 73 |
occurrenceID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| ... | ... | |
| 142 | 142 |
//plot/slopeAspect,/location/slopeaspect/_compass/value, |
| 143 | 143 |
//plot/slopeGradient,/location/slopegradient, |
| 144 | 144 |
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 145 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 145 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 146 | 146 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 147 | 147 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 148 | 148 |
//plot/plotUniqueIdentifier,/location/sourceaccessioncode/_merge/1/_alt/1, |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 23 | 23 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9 |
| 24 | 24 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 25 | 25 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 26 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 26 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 27 | 27 |
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 28 | 28 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
| 29 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 29 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 30 | 30 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30 |
| 31 | 31 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30 |
| 32 | 32 |
occurrenceID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| ... | ... | |
| 51 | 51 |
verbatimLocality,/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69 |
| 52 | 52 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52 |
| 53 | 53 |
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 54 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 54 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 55 | 55 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 56 | 56 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 57 | 57 |
acceptedNameUsage,,,DwC,135 |
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 23 | 23 |
collectionID,//specimenreplicate/collectionnumber,,DwC,9 |
| 24 | 24 |
fieldNumber,//specimenreplicate/collectionnumber,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 25 | 25 |
sex,"//specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 26 |
fieldNotes,//specimenreplicate/description,,,
|
|
| 26 |
fieldNotes,//specimenreplicate/description,,DwC,54
|
|
| 27 | 27 |
taxonRemarks,//specimenreplicate/description,,DwC,158 |
| 28 | 28 |
establishmentMeans,//specimenreplicate/growthform,,DwC,30 |
| 29 |
institutionCode,//party/organizationname,,,
|
|
| 29 |
institutionCode,//party/organizationname,,DwC,11
|
|
| 30 | 30 |
establishmentMeans,//specimenreplicate/iscultivated,,DwC,30 |
| 31 | 31 |
establishmentMeans,//specimenreplicate/isnative,,DwC,30 |
| 32 | 32 |
occurrenceID,//specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| ... | ... | |
| 51 | 51 |
verbatimLocality,//location/locationnarrative,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69 |
| 52 | 52 |
habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52 |
| 53 | 53 |
occurrenceID,//location/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 54 |
institutionCode,//location/sourceaccessioncode,,,
|
|
| 54 |
institutionCode,//location/sourceaccessioncode,,DwC,11
|
|
| 55 | 55 |
collectionCode,//location/sourceaccessioncode,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 56 | 56 |
catalogNumber,//location/sourceaccessioncode,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 57 | 57 |
acceptedNameUsage,,,DwC,135 |
| mappings/for_review/VegBIEN-DwC2.specimens.csv | ||
|---|---|---|
| 23 | 23 |
//specimenreplicate/collectionnumber,collectionID,,DwC,9 |
| 24 | 24 |
//specimenreplicate/collectionnumber,fieldNumber,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 25 | 25 |
"//specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue",sex,"Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 26 |
//specimenreplicate/description,fieldNotes,,,
|
|
| 26 |
//specimenreplicate/description,fieldNotes,,DwC,54
|
|
| 27 | 27 |
//specimenreplicate/description,taxonRemarks,,DwC,158 |
| 28 | 28 |
//specimenreplicate/growthform,establishmentMeans,,DwC,30 |
| 29 |
//party/organizationname,institutionCode,,,
|
|
| 29 |
//party/organizationname,institutionCode,,DwC,11
|
|
| 30 | 30 |
//specimenreplicate/iscultivated,establishmentMeans,,DwC,30 |
| 31 | 31 |
//specimenreplicate/isnative,establishmentMeans,,DwC,30 |
| 32 | 32 |
//specimenreplicate/sourceaccessioncode,occurrenceID,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| ... | ... | |
| 51 | 51 |
//location/locationnarrative,verbatimLocality,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69 |
| 52 | 52 |
"//location/locationnarrative/_label[label=""habitat""]/value",habitat,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52 |
| 53 | 53 |
//location/sourceaccessioncode,occurrenceID,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 54 |
//location/sourceaccessioncode,institutionCode,,,
|
|
| 54 |
//location/sourceaccessioncode,institutionCode,,DwC,11
|
|
| 55 | 55 |
//location/sourceaccessioncode,collectionCode,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 56 | 56 |
//location/sourceaccessioncode,catalogNumber,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 57 | 57 |
,acceptedNameUsage,,DwC,135 |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 89 | 89 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 90 | 90 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 91 | 91 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 92 |
FieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 93 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 94 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 95 |
notes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 92 |
FieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 93 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 94 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 95 |
notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 96 | 96 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 97 | 97 |
TaxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 98 | 98 |
remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 99 | 99 |
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 100 | 100 |
EstablishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
| 101 | 101 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
| 102 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 103 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 102 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 103 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 104 | 104 |
EstablishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30 |
| 105 | 105 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30 |
| 106 | 106 |
EstablishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30 |
| ... | ... | |
| 179 | 179 |
globalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 180 | 180 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 181 | 181 |
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 182 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 183 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 182 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 183 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 184 | 184 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 185 | 185 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 186 | 186 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 44 | 44 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9 |
| 45 | 45 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53 |
| 46 | 46 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26 |
| 47 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 48 |
notes,/location/locationevent/specimenreplicate/description/_merge/1,,,
|
|
| 47 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 48 |
notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 49 | 49 |
remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 50 | 50 |
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158 |
| 51 | 51 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
| 52 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,,
|
|
| 52 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 53 | 53 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30 |
| 54 | 54 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30 |
| 55 | 55 |
globalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| ... | ... | |
| 89 | 89 |
globalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 90 | 90 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 91 | 91 |
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19 |
| 92 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,,
|
|
| 92 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 93 | 93 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12 |
| 94 | 94 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20 |
| 95 | 95 |
acceptedNameUsage,,,DwC,135 |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Repopulated Order values for the few rows that had lost it in the process of copying and pasting mappings