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1
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os = $(shell uname)
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2
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3
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SED = sed -$(if $(filter Darwin,$(os)),E,r)
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4
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5
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#####
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6
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7
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all: _always misc
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8
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$(MAKE) plots
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9
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./join VegX VegBIEN
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10
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./review
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11
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12
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.SUFFIXES:
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13
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14
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_always:
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15
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.PHONY: _always
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16
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17
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misc := schemas/vegbien.sql schemas/vegbien_empty.sql
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18
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19
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all = $(wildcard for_review/*.csv) \
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20
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$(filter-out VegX-%,$(wildcard *-VegBIEN.*.csv)) VegX-*.plots.csv $(misc)
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21
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22
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clean: _always
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23
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$(RM) $(all)
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24
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25
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%:: %.make
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26
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./$< >$@
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27
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.PRECIOUS: %
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28
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29
|
#####
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|
30
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31
|
misc: $(misc)
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32
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.PRECIOUS: $(misc)
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33
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34
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bin = ../bin
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35
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repl = $(bin)/repl
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36
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sort = $(bin)/sort 1 0
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37
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chRoot = $(bin)/ch_root <$< >$@
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38
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empty = $(SED) -n \
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39
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's/^CREATE TABLE ([0-9A-Za-z_]+) \($$/TRUNCATE \1 CASCADE;/p' <$< >$@
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40
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41
|
schemas/vegbien_empty.sql: schemas/vegbien.sql
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42
|
$(empty)
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43
|
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44
|
VegX-VegBIEN.organisms.csv: _always
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45
|
$(bin)/in_place $@ $(sort)
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46
|
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47
|
#####
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|
48
|
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|
49
|
plots: _always $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))
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|
50
|
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51
|
chRoot2PlotsLeftVegx =\
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52
|
env \
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53
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left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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54
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left_out_root='/*s/plotObservation' \
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55
|
$(chRoot)
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|
56
|
|
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57
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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58
|
$(chRoot2PlotsVegxVegbien)
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59
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chRoot2PlotsVegxVegbien =\
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|
60
|
env \
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|
61
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right_in_root='/taxonoccurrence/*_ID/plotevent' \
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62
|
right_out_root='/plotevent' \
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63
|
$(chRoot2PlotsLeftVegx)
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