Revision 3834
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
MT[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
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| 3 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
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| 4 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9
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| 5 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
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| 6 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
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| 7 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30
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| 8 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30
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| 9 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
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| 10 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
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| 11 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
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| 12 |
locality,/location/locationnarrative/_merge/1,,DwC,68
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| 13 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
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| 14 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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| 15 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
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| 2 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
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| 3 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
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| 4 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/,9
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| 5 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/,30
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| 6 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
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| 7 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/,30
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| 8 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,http://rs.tdwg.org/dwc/terms/,30
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| 9 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
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| 10 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
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| 11 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
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| 12 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
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| 13 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
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| 14 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
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| 15 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
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| 16 | 16 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| 17 | 17 |
countryCode,,** No non-empty join mapping for countryCode ** |
| 18 | 18 |
datasetName,,** No non-empty join mapping for datasetName ** |
| inputs/XAL/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
"XAL[DwC,darwin:]:/content/record/",VegBIEN:,Comments,Source,Order |
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
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| 3 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
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| 4 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
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| 5 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
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| 6 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
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| 7 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,DwC,89
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| 8 |
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
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| 9 |
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
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| 10 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
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| 11 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
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| 12 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
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ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
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DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
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| 15 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
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YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
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| 17 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
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| 18 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
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YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
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CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
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| 21 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
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| 22 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22
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FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53
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| 24 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
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Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
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InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
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| 27 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120
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| 28 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120
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| 29 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120
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IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
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IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
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IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
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ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
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ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
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Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
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| 36 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
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| 37 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
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| 38 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
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| 39 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
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| 40 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
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| 41 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
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| 42 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
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| 43 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
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| 44 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
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| 45 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
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| 46 |
Locality,/location/locationnarrative/_merge/1,,DwC,68
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| 47 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
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| 48 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
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| 49 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
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MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
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MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
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| 4 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
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| 5 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
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| 6 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
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| 7 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,89
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| 8 |
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
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| 9 |
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
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| 10 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
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| 11 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
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| 12 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
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| 13 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
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| 14 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
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| 15 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
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| 16 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
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| 17 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
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| 18 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
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| 19 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
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| 20 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
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| 21 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
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| 22 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
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| 23 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",http://rs.tdwg.org/dwc/terms/,53
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| 24 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
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| 25 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
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|
| 26 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 27 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 28 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 29 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 30 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 31 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 32 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 33 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 34 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 35 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 36 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 37 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 38 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 39 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 40 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 41 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 42 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 43 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 44 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 45 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 46 |
Locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 47 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 48 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 49 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 50 | 50 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| 51 | 51 |
DateLastModified,,** No non-empty join mapping for DateLastModified ** |
| 52 | 52 |
IndividualCount,,** No non-empty join mapping for IndividualCount ** |
| inputs/NY/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
NY[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 3 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",,DwC,71
|
|
| 4 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",,DwC,71
|
|
| 5 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 6 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",,DwC,71
|
|
| 7 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,DwC,89
|
|
| 8 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,,DwC,91
|
|
| 9 |
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 10 |
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 11 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 12 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 13 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 14 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 15 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 16 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 17 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 18 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 19 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 20 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 21 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 22 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 23 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22
|
|
| 24 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53
|
|
| 25 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
|
|
| 26 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,DwC,54
|
|
| 27 |
PlantFungusDescription,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,DwC,54
|
|
| 28 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 29 |
UniqueNYInternalRecordNumber,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 30 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 31 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 32 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 33 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 34 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 35 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 36 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 37 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 38 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 39 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 40 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 41 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 42 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
|
|
| 43 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
|
|
| 44 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
|
|
| 45 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 46 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 47 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
|
|
| 48 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
|
|
| 49 |
Locality,/location/locationnarrative/_merge/1/_merge/1,,DwC,68
|
|
| 50 |
Substrate,"/location/locationnarrative/_merge/1/_merge/2/_label[label=""substrate""]/value",,DwC,68
|
|
| 51 |
Vegetation,"/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value",,DwC,68
|
|
| 52 |
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 53 |
UniqueNYInternalRecordNumber,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 54 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 55 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 56 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 3 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 4 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 5 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 6 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 7 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,89
|
|
| 8 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,,http://rs.tdwg.org/dwc/terms/,91
|
|
| 9 |
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 10 |
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 11 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 12 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 13 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 14 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 15 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 16 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 17 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 18 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 19 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 20 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 21 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 22 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 23 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 24 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",http://rs.tdwg.org/dwc/terms/,53
|
|
| 25 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
|
|
| 26 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 27 |
PlantFungusDescription,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,http://rs.tdwg.org/dwc/terms/,54
|
|
| 28 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 29 |
UniqueNYInternalRecordNumber,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 30 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 31 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 32 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 33 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 34 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 35 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 36 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 37 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 38 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 39 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 40 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 41 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 42 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 43 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 44 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 45 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 46 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 47 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 48 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 49 |
Locality,/location/locationnarrative/_merge/1/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 50 |
Substrate,"/location/locationnarrative/_merge/1/_merge/2/_label[label=""substrate""]/value",,http://rs.tdwg.org/dwc/terms/,68
|
|
| 51 |
Vegetation,"/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value",,http://rs.tdwg.org/dwc/terms/,68
|
|
| 52 |
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 53 |
UniqueNYInternalRecordNumber,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 54 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 55 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 56 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 57 | 57 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| 58 | 58 |
DateLastModified,,** No non-empty join mapping for DateLastModified ** |
| 59 | 59 |
IndividualCount,,** No non-empty join mapping for IndividualCount ** |
| inputs/UNCC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
UNCC[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 3 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 4 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 5 |
collday,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 6 |
collmonth,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 7 |
collyear,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 8 |
collday,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 9 |
collmonth,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 10 |
collyear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 11 |
herbarium,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 12 |
collectno,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22
|
|
| 13 |
comment1,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,DwC,54
|
|
| 14 |
comment2,/location/locationevent/specimenreplicate/description/_merge/1/_merge/2,,DwC,54
|
|
| 15 |
comment3,/location/locationevent/specimenreplicate/description/_merge/1/_merge/3,,DwC,54
|
|
| 16 |
comment4,/location/locationevent/specimenreplicate/description/_merge/1/_merge/4,,DwC,54
|
|
| 17 |
campus,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",,DwC,54
|
|
| 18 |
loanto,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",,DwC,54
|
|
| 19 |
inorout,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",,DwC,54
|
|
| 20 |
cultivated,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,DwC,30
|
|
| 21 |
cultivated,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,DwC,30
|
|
| 22 |
cultivated,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,DwC,30
|
|
| 23 |
accession,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 24 |
SciName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 25 |
authors,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 26 |
infraname,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 27 |
species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 28 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 29 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 30 |
collector,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/1,,DwC,23
|
|
| 31 |
collector1,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/2,,DwC,23
|
|
| 32 |
collector2,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/3,,DwC,23
|
|
| 33 |
collector3,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/4,,DwC,23
|
|
| 34 |
locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 35 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 36 |
accession,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 37 |
herbarium,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 2 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 3 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 4 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 5 |
collday,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 6 |
collmonth,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 7 |
collyear,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 8 |
collday,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 9 |
collmonth,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 10 |
collyear,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 11 |
herbarium,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 12 |
collectno,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 13 |
comment1,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 14 |
comment2,/location/locationevent/specimenreplicate/description/_merge/1/_merge/2,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 15 |
comment3,/location/locationevent/specimenreplicate/description/_merge/1/_merge/3,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 16 |
comment4,/location/locationevent/specimenreplicate/description/_merge/1/_merge/4,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 17 |
campus,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",,http://rs.tdwg.org/dwc/terms/,54
|
|
| 18 |
loanto,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",,http://rs.tdwg.org/dwc/terms/,54
|
|
| 19 |
inorout,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",,http://rs.tdwg.org/dwc/terms/,54
|
|
| 20 |
cultivated,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/,30
|
|
| 21 |
cultivated,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/,30
|
|
| 22 |
cultivated,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/,30
|
|
| 23 |
accession,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 24 |
SciName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 25 |
authors,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 26 |
infraname,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 27 |
species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 28 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 29 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 30 |
collector,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/1,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 31 |
collector1,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/2,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 32 |
collector2,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/3,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 33 |
collector3,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/4,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 34 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 35 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 36 |
accession,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 37 |
herbarium,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 38 | 38 |
filler,,"Where used, same as family" |
| 39 | 39 |
flower,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?" |
| 40 | 40 |
fruit,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?" |
| inputs/ACAD/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
ACAD[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 3 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 5 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 7 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 8 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,DwC,44
|
|
| 9 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,44
|
|
| 10 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 11 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 12 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,DwC,22
|
|
| 13 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9
|
|
| 14 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 15 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 16 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,120
|
|
| 17 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 18 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 19 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 20 |
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 21 |
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 22 |
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 23 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 24 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 25 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 26 |
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
|
|
| 27 |
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
|
|
| 28 |
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
|
|
| 29 |
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 30 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 31 |
locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 32 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 33 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 34 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 35 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 36 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 3 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 5 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 7 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 8 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 9 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 10 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 11 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 12 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 13 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/,9
|
|
| 14 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 15 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 16 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,120
|
|
| 17 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 18 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 19 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 20 |
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 21 |
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 22 |
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 23 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 24 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 25 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 26 |
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 27 |
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 28 |
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 29 |
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 30 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 31 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 32 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 33 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 34 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 35 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 36 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 37 | 37 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| 38 | 38 |
bibliographicCitation,,** No non-empty join mapping for bibliographicCitation ** |
| 39 | 39 |
dynamicProperties,,** No non-empty join mapping for dynamicProperties ** |
| inputs/REMIB/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
REMIB[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
lat_deg,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 3 |
long_deg,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 5 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 7 |
coll_day,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 8 |
coll_month,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 9 |
coll_year,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 10 |
coll_day,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 11 |
coll_month,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 12 |
coll_year,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 13 |
acronym,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 14 |
accession_number,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 15 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 16 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 17 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 18 |
collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 19 |
locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 20 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 21 |
accession_number,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 22 |
acronym,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 2 |
lat_deg,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 3 |
long_deg,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 4 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 5 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 6 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 7 |
coll_day,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 8 |
coll_month,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 9 |
coll_year,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 10 |
coll_day,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 11 |
coll_month,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 12 |
coll_year,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 13 |
acronym,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 14 |
accession_number,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 15 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 16 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 17 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 18 |
collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 19 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 20 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 21 |
accession_number,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 22 |
acronym,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 23 | 23 |
lat_min,,** No input mapping for lat_min ** |
| 24 | 24 |
lat_sec,,** No input mapping for lat_sec ** |
| 25 | 25 |
long_min,,** No input mapping for long_min ** |
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
U[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 3 |
Long,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 4 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 5 |
Colldd,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 6 |
Collmm,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 7 |
Collyy,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 8 |
Colldd,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 9 |
Collmm,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 10 |
Collyy,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 11 |
Barcode,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 12 |
Number,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,DwC,22
|
|
| 13 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 14 |
ID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 15 |
Detyy,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 16 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 17 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 18 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 19 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 20 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 21 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/1,,DwC,23
|
|
| 22 |
Addcoll,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/2,,DwC,23
|
|
| 23 |
Gazetteer,"/location/locationnarrative/_merge/2/_merge/1/_label[label=""gazetteer""]/value/_merge/1","Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69
|
|
| 24 |
Newgazett,"/location/locationnarrative/_merge/2/_merge/1/_label[label=""gazetteer""]/value/_merge/2","Only used in 1 row; Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69
|
|
| 25 |
Locnotes,/location/locationnarrative/_merge/2/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69
|
|
| 26 |
Ecology,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 27 |
ID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 28 |
Barcode,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 3 |
Long,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 4 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 5 |
Colldd,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 6 |
Collmm,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 7 |
Collyy,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 8 |
Colldd,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 9 |
Collmm,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 10 |
Collyy,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 11 |
Barcode,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 12 |
Number,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 13 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 14 |
ID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 15 |
Detyy,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 16 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 17 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 18 |
Detby,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 19 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 20 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 21 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/1,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 22 |
Addcoll,/location/locationevent/specimenreplicate/verbatimcollectorname/_merge/2,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 23 |
Gazetteer,"/location/locationnarrative/_merge/2/_merge/1/_label[label=""gazetteer""]/value/_merge/1","Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",http://rs.tdwg.org/dwc/terms/,69
|
|
| 24 |
Newgazett,"/location/locationnarrative/_merge/2/_merge/1/_label[label=""gazetteer""]/value/_merge/2","Only used in 1 row; Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",http://rs.tdwg.org/dwc/terms/,69
|
|
| 25 |
Locnotes,/location/locationnarrative/_merge/2/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",http://rs.tdwg.org/dwc/terms/,69
|
|
| 26 |
Ecology,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 27 |
ID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 28 |
Barcode,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 29 | 29 |
Alt,,What is this? |
| 30 | 30 |
Alt2,,What is this? |
| 31 | 31 |
Coorsyst,,** No input mapping for Coorsyst ** |
| inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
ARIZ[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 3 |
MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 4 |
MinimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 5 |
MaximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 6 |
MinimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 7 |
CoordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,DwC,88
|
|
| 8 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,,DwC,91
|
|
| 9 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 10 |
VerbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 11 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 12 |
VerbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 13 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 14 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 15 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 16 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 17 |
VerbatimCollectingDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/0,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,DwC,44
|
|
| 18 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 19 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 20 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 21 |
VerbatimCollectingDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/0,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,DwC,44
|
|
| 22 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 23 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 24 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 25 |
CatalogNumberNumeric,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 26 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 27 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22
|
|
| 28 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53
|
|
| 29 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
|
|
| 30 |
FieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 31 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158
|
|
| 32 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 33 |
GlobalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 34 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 35 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 36 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 37 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 38 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 39 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 40 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/1","Contains the binomial in addition to the authority; Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 41 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/2","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 42 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 43 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 44 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 45 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 46 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
|
|
| 47 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
|
|
| 48 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
|
|
| 49 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 50 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 51 |
MaximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
|
|
| 52 |
MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
|
|
| 53 |
Locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 54 |
GlobalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 55 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 56 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 57 |
CatalogNumberNumeric,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 3 |
MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 4 |
MinimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 5 |
MaximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 6 |
MinimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 7 |
CoordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,http://rs.tdwg.org/dwc/terms/,88
|
|
| 8 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,,http://rs.tdwg.org/dwc/terms/,91
|
|
| 9 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 10 |
VerbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 11 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 12 |
VerbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 13 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 14 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 15 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 16 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 17 |
VerbatimCollectingDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/0,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,http://rs.tdwg.org/dwc/terms/,44
|
|
| 18 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 19 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 20 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 21 |
VerbatimCollectingDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/0,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,http://rs.tdwg.org/dwc/terms/,44
|
|
| 22 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 23 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 24 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 25 |
CatalogNumberNumeric,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 26 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 27 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 28 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",http://rs.tdwg.org/dwc/terms/,53
|
|
| 29 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
|
|
| 30 |
FieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 31 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,http://rs.tdwg.org/dwc/terms/,158
|
|
| 32 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 33 |
GlobalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 34 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 35 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 36 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 37 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 38 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 39 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 40 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/1","Contains the binomial in addition to the authority; Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 41 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/2","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 42 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 43 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 44 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 45 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 46 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 47 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 48 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 49 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 50 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 51 |
MaximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 52 |
MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 53 |
Locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 54 |
GlobalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 55 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 56 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 57 |
CatalogNumberNumeric,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 58 | 58 |
AgeClass,,** No non-empty join mapping for lifeStage ** |
| 59 | 59 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| 60 | 60 |
CatalogNumber,,Map to nothing so it doesn't overwrite CatalogNumberNumeric |
| inputs/GBIF/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
GBIF[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
MaximumElevationInMeter,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 3 |
MinimumElevationInMeter,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 4 |
MinimumElevationInMeter,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 5 |
MaximumElevationInMeter,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 6 |
MinimumElevationInMeter,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 7 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 8 |
VerbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 9 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 10 |
VerbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 11 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 12 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 13 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 14 |
LatestDateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,DwC,44
|
|
| 15 |
LatestDateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,44
|
|
| 16 |
CatalogNO,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 17 |
CollectionCD,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 18 |
InstitutionCD,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 19 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 20 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 21 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 22 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 23 |
AuthorOfScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 24 |
InfraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 25 |
SpecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 26 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 27 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 28 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 29 |
Locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 30 |
InstitutionCD,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 31 |
CollectionCD,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 32 |
CatalogNO,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
MaximumElevationInMeter,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 3 |
MinimumElevationInMeter,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 4 |
MinimumElevationInMeter,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 5 |
MaximumElevationInMeter,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 6 |
MinimumElevationInMeter,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 7 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 8 |
VerbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 9 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 10 |
VerbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 11 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 12 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 13 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 14 |
LatestDateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 15 |
LatestDateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 16 |
CatalogNO,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 17 |
CollectionCD,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 18 |
InstitutionCD,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 19 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 20 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 21 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 22 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 23 |
AuthorOfScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 24 |
InfraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 25 |
SpecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 26 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 27 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 28 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 29 |
Locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 30 |
InstitutionCD,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 31 |
CollectionCD,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 32 |
CatalogNO,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 33 | 33 |
GBIFFamilyOriginal,,** No non-empty join mapping for originalNameUsage/_alt/2/_name/first ** DwC doesn't fully support taxonomic redeterminations |
| 34 | 34 |
GBIFGenusOriginal,,** No non-empty join mapping for originalNameUsage/_alt/2/_name/middle ** DwC doesn't fully support taxonomic redeterminations |
| 35 | 35 |
LastDateModified,,** No non-empty join mapping for DateLastModified ** |
| inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
NCU-NCSC[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
Accuracy,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,DwC,88
|
|
| 3 |
Lat (-=S),"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",,DwC,81
|
|
| 4 |
Long (-=W),"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",,DwC,82
|
|
| 5 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 6 |
State,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 7 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 8 |
Collect Date,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/3,,DwC,44
|
|
| 9 |
Collect Date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/3,,DwC,44
|
|
| 10 |
Barcode,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 11 |
SeriesName,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 12 |
Cultivated?,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Yes=cultivated,No=wild]/value",,DwC,30
|
|
| 13 |
Cultivated?,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",,DwC,30
|
|
| 14 |
Cultivated?,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",,DwC,30
|
|
| 15 |
Accession Number,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 16 |
Full Taxon Name,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 17 |
Accession Number,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 18 |
SeriesName,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 19 |
Barcode,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
Accuracy,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,http://rs.tdwg.org/dwc/terms/,88
|
|
| 3 |
Lat (-=S),"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 4 |
Long (-=W),"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 5 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 6 |
State,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 7 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 8 |
Collect Date,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/3,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 9 |
Collect Date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/3,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 10 |
Barcode,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 11 |
SeriesName,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 12 |
Cultivated?,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Yes=cultivated,No=wild]/value",,http://rs.tdwg.org/dwc/terms/,30
|
|
| 13 |
Cultivated?,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",,http://rs.tdwg.org/dwc/terms/,30
|
|
| 14 |
Cultivated?,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",,http://rs.tdwg.org/dwc/terms/,30
|
|
| 15 |
Accession Number,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 16 |
Full Taxon Name,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 17 |
Accession Number,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 18 |
SeriesName,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 19 |
Barcode,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 20 | 20 |
Alt E/W,,** No input mapping for Alt E/W ** |
| 21 | 21 |
Alt N/S,,** No input mapping for Alt N/S ** |
| 22 | 22 |
Elevation,,** No non-empty join mapping for VerbatimElevation ** |
| inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
"SpeciesLink[DwC,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",VegBIEN:,Comments,Source,Order |
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 3 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 4 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 5 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 6 |
MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 7 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 8 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 9 |
MinimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 10 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 11 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 12 |
MaximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 13 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 14 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 15 |
MinimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 16 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 17 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,DwC,88
|
|
| 18 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,DwC,89
|
|
| 19 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,,DwC,91
|
|
| 20 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 21 |
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 22 |
VerbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 23 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 24 |
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 25 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 26 |
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 27 |
VerbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 28 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 29 |
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 30 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 31 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 32 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 33 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 34 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 35 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 36 |
Continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 37 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 38 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 39 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 40 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 41 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 42 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 43 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 44 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 45 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 46 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 47 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 48 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 49 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22
|
|
| 50 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,DwC,22
|
|
| 51 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9
|
|
| 52 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53
|
|
| 53 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53
|
|
| 54 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
|
|
| 55 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
|
|
| 56 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 57 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158
|
|
| 58 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 59 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 60 |
GlobalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 61 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 62 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 63 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,120
|
|
| 64 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,120
|
|
| 65 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 66 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 67 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 68 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 69 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 70 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 71 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 72 |
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 73 |
AuthorYearOfScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 74 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","`union` would otherwise remove this input name because it's been mapped to (renamed) above; Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 75 |
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 76 |
InfraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 77 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 78 |
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 79 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 80 |
SpecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 81 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 82 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 83 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 84 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 85 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 86 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
|
|
| 87 |
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
|
|
| 88 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
|
|
| 89 |
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
|
|
| 90 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
|
|
| 91 |
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
|
|
| 92 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 93 |
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 94 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 95 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 96 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
|
|
| 97 |
MaximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
|
|
| 98 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
|
|
| 99 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
|
|
| 100 |
MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
|
|
| 101 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
|
|
| 102 |
Locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 103 |
locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 104 |
GlobalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 105 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 106 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 107 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 108 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 109 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 110 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 3 |
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 4 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 5 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 6 |
MinimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 7 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 8 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 9 |
MinimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 10 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 11 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 12 |
MaximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 13 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 14 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 15 |
MinimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 16 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 17 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,http://rs.tdwg.org/dwc/terms/,88
|
|
| 18 |
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,89
|
|
| 19 |
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,,http://rs.tdwg.org/dwc/terms/,91
|
|
| 20 |
DecimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 21 |
Latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 22 |
VerbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 23 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 24 |
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 25 |
DecimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 26 |
Longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 27 |
VerbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 28 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 29 |
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 30 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 31 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 32 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 33 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 34 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 35 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 36 |
Continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 37 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 38 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 39 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 40 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 41 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 42 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 43 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 44 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 45 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 46 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 47 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 48 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 49 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 50 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/2,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 51 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/,9
|
|
| 52 |
FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",http://rs.tdwg.org/dwc/terms/,53
|
|
| 53 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",http://rs.tdwg.org/dwc/terms/,53
|
|
| 54 |
Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
|
|
| 55 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
|
|
| 56 |
Notes,/location/locationevent/specimenreplicate/description/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 57 |
Remarks,/location/locationevent/specimenreplicate/description/_merge/2,,http://rs.tdwg.org/dwc/terms/,158
|
|
| 58 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 59 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 60 |
GlobalUniqueIdentifier,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 61 |
DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 62 |
MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 63 |
YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,120
|
|
| 64 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,120
|
|
| 65 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 66 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 67 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 68 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 69 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 70 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 71 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 72 |
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 73 |
AuthorYearOfScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 74 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","`union` would otherwise remove this input name because it's been mapped to (renamed) above; Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 75 |
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 76 |
InfraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 77 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 78 |
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 79 |
Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 80 |
SpecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 81 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 82 |
Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 83 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 84 |
Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 85 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 86 |
Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 87 |
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 88 |
Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 89 |
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 90 |
Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 91 |
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 92 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 93 |
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 94 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 95 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 96 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 97 |
MaximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 98 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 99 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 100 |
MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 101 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 102 |
Locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 103 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 104 |
GlobalUniqueIdentifier,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 105 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 106 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 107 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 108 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 109 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 110 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 111 | 111 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| 112 | 112 |
DateLastModified,,** No non-empty join mapping for DateLastModified ** |
| 113 | 113 |
DayOfYear,,** No non-empty join mapping for JulianDay ** |
| inputs/MO/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
MO[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 3 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 4 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 5 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 6 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 7 |
latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 8 |
longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 9 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 10 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 11 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 12 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 13 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 14 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 15 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 16 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 17 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 18 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,DwC,44
|
|
| 19 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 20 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 21 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,DwC,22
|
|
| 22 |
convertednotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 23 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 24 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 25 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 26 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 27 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 28 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 29 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 30 |
species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 31 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 32 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 33 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 34 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 35 |
Locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 36 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 37 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 38 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 3 |
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 4 |
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 5 |
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 6 |
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 7 |
latitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 8 |
longitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 9 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 10 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 11 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 12 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 13 |
DayCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 14 |
MonthCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 15 |
YearCollected,"/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 16 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 17 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 18 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,44
|
|
| 19 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 20 |
CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 21 |
CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 22 |
convertednotes,/location/locationevent/specimenreplicate/description/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 23 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 24 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 25 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 26 |
IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 27 |
ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 28 |
ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 29 |
Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 30 |
species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 31 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 32 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 33 |
Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 34 |
Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 35 |
Locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 36 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 37 |
CollectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 38 |
CatalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 39 | 39 |
BasisOfRecord,,** No non-empty join mapping for BasisOfRecord ** |
| 40 | 40 |
DateLastModified,,** No non-empty join mapping for DateLastModified ** |
| 41 | 41 |
IndividualCount,,** No non-empty join mapping for IndividualCount ** |
| inputs/QMOR/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
QMOR[DwC],VegBIEN:,Comments,Source,Order |
| 2 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 3 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 4 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 5 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 6 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 7 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,DwC,88
|
|
| 8 |
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,,DwC,91
|
|
| 9 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 10 |
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 11 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 12 |
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 13 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66
|
|
| 14 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65
|
|
| 15 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63
|
|
| 16 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,DwC,59
|
|
| 17 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,DwC,44
|
|
| 18 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,44
|
|
| 19 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 20 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 21 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9
|
|
| 22 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
|
|
| 23 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 24 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 25 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,DwC,120
|
|
| 26 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 27 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 28 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 29 |
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",DwC,134
|
|
| 30 |
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",DwC,153
|
|
| 31 |
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,DwC,150
|
|
| 32 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,DwC,149
|
|
| 33 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,DwC,147
|
|
| 34 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,DwC,146
|
|
| 35 |
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,DwC,145
|
|
| 36 |
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,DwC,144
|
|
| 37 |
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,DwC,143
|
|
| 38 |
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,DwC,142
|
|
| 39 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 40 |
locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 41 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 42 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 43 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 44 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 45 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 2 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 3 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 4 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 5 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 6 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 7 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,http://rs.tdwg.org/dwc/terms/,88
|
|
| 8 |
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,,http://rs.tdwg.org/dwc/terms/,91
|
|
| 9 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 10 |
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 11 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 12 |
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 13 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/,66
|
|
| 14 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/,65
|
|
| 15 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,http://rs.tdwg.org/dwc/terms/,63
|
|
| 16 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,http://rs.tdwg.org/dwc/terms/,59
|
|
| 17 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 18 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 19 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 20 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 21 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/,9
|
|
| 22 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
|
|
| 23 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 24 |
id,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 25 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,120
|
|
| 26 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 27 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 28 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 29 |
scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",http://rs.tdwg.org/dwc/terms/,134
|
|
| 30 |
scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",http://rs.tdwg.org/dwc/terms/,153
|
|
| 31 |
infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/,150
|
|
| 32 |
specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/,149
|
|
| 33 |
genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/,147
|
|
| 34 |
family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/,146
|
|
| 35 |
order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/,145
|
|
| 36 |
class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/,144
|
|
| 37 |
phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,143
|
|
| 38 |
kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/,142
|
|
| 39 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 40 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 41 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 42 |
id,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 43 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 44 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 45 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 46 | 46 |
acceptedNameUsage,,** No non-empty join mapping for acceptedNameUsage ** |
| 47 | 47 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| 48 | 48 |
behavior,,** No non-empty join mapping for behavior ** |
| mappings/VegCSV-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
VegCSV[DwC],VegBIEN:,Comments,Source,Order |
| 2 | 2 |
//plot/area,/location/area,,, |
| 3 | 3 |
//geospatial/verbatimElevation,/location/elevation/_alt/1,,, |
| 4 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,72
|
|
| 4 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 5 | 5 |
//geospatial/maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_rangeEnd/value",,, |
| 6 | 6 |
//geospatial/minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value",,, |
| 7 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 7 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 8 | 8 |
//geospatial/minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value",,, |
| 9 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 10 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,DwC,72
|
|
| 11 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,DwC,71
|
|
| 9 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 10 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1",,http://rs.tdwg.org/dwc/terms/,72
|
|
| 11 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",,http://rs.tdwg.org/dwc/terms/,71
|
|
| 12 | 12 |
//geospatial/maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_rangeEnd/value",,, |
| 13 | 13 |
//plot/landform,/location/landform,,, |
| 14 | 14 |
//geospatial/CoordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy,,, |
| 15 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,DwC,88
|
|
| 16 |
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,DwC,89
|
|
| 15 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,http://rs.tdwg.org/dwc/terms/,88
|
|
| 16 |
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,89
|
|
| 17 | 17 |
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,,DwC,91 |
| 18 | 18 |
//geospatial/DecimalLatitude,/location/locationdetermination/latitude,,, |
| 19 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,85
|
|
| 20 |
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,81
|
|
| 19 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,85
|
|
| 20 |
verbatimLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,81
|
|
| 21 | 21 |
//geospatial/DecimalLongitude,/location/locationdetermination/longitude,,, |
| 22 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,86
|
|
| 23 |
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,DwC,82
|
|
| 22 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,86
|
|
| 23 |
verbatimLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,http://rs.tdwg.org/dwc/terms/,82
|
|
| 24 | 24 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,DwC,66 |
| 25 | 25 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,DwC,65 |
| 26 | 26 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,DwC,63 |
| ... | ... | |
| 32 | 32 |
//*s/communityDetermination/*s/communityConcept/commonName,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,,, |
| 33 | 33 |
//*s/communityDetermination/*s/communityConcept/name,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,,, |
| 34 | 34 |
//*s/plotObservation/obsEndDate,/location/locationevent/obsenddate,,, |
| 35 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value,,DwC,44
|
|
| 35 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 36 | 36 |
//*s/plotObservation/obsStartDate,/location/locationevent/obsstartdate,,, |
| 37 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,,DwC,44
|
|
| 37 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,,http://rs.tdwg.org/dwc/terms/,44
|
|
| 38 | 38 |
//plot/plotUniqueIdentifier,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,,, |
| 39 | 39 |
//plot/plotName,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,,, |
| 40 | 40 |
//plot/plotName,/location/locationevent/parent_id/locationevent/authorlocationcode,,, |
| ... | ... | |
| 58 | 58 |
//abioticObservation/simpleUserdefined[name=sodium]/value,/location/locationevent/soilobs/sodium,,, |
| 59 | 59 |
//abioticObservation/simpleUserdefined[name=texture]/value,/location/locationevent/soilobs/texture,,, |
| 60 | 60 |
//plot/plotUniqueIdentifier,/location/locationevent/sourceaccessioncode,,, |
| 61 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 62 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 63 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1,,DwC,22
|
|
| 64 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,DwC,9
|
|
| 65 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",DwC,53
|
|
| 66 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",DwC,26
|
|
| 67 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,DwC,54
|
|
| 68 |
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,DwC,158
|
|
| 69 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,DwC,30
|
|
| 70 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,DwC,11
|
|
| 71 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,DwC,30
|
|
| 72 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,DwC,30
|
|
| 73 |
occurrenceID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 74 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,DwC,120
|
|
| 75 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 76 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 77 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,DwC,119
|
|
| 78 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,DwC,23
|
|
| 61 |
catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 62 |
collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 63 |
recordNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1,,http://rs.tdwg.org/dwc/terms/,22
|
|
| 64 |
collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/,9
|
|
| 65 |
fieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",http://rs.tdwg.org/dwc/terms/,53
|
|
| 66 |
sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/,26
|
|
| 67 |
fieldNotes,/location/locationevent/specimenreplicate/description/_merge/1,,http://rs.tdwg.org/dwc/terms/,54
|
|
| 68 |
taxonRemarks,/location/locationevent/specimenreplicate/description/_merge/2,,http://rs.tdwg.org/dwc/terms/,158
|
|
| 69 |
establishmentMeans,"/location/locationevent/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/,30
|
|
| 70 |
institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 71 |
establishmentMeans,"/location/locationevent/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/,30
|
|
| 72 |
establishmentMeans,"/location/locationevent/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,http://rs.tdwg.org/dwc/terms/,30
|
|
| 73 |
occurrenceID,/location/locationevent/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 74 |
dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,http://rs.tdwg.org/dwc/terms/,120
|
|
| 75 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 76 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 77 |
identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,Brad: Bob: does this look correct for VegBank?,http://rs.tdwg.org/dwc/terms/,119
|
|
| 78 |
recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/,23
|
|
| 79 | 79 |
//*s/taxonDetermination[role=collector]/groupType,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/cond/_eq:[right=direct]/left,,, |
| 80 | 80 |
//taxonNameUsageConcept/voucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc,,, |
| 81 | 81 |
//individualOrganismObservation/simpleUserdefined[name=collectionDate]/value,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/collectiondate,,, |
| ... | ... | |
| 131 | 131 |
//individualName/surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,,, |
| 132 | 132 |
//*s/plotObservation/temperature,/location/locationevent/temperature,,, |
| 133 | 133 |
//geospatial/maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,, |
| 134 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,DwC,75
|
|
| 134 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
|
|
| 135 | 135 |
//geospatial/minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,, |
| 136 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,DwC,74
|
|
| 136 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
|
|
| 137 | 137 |
//plot/locationNarrative,/location/locationnarrative,,, |
| 138 |
locality,/location/locationnarrative/_merge/1,,DwC,68
|
|
| 139 |
verbatimLocality,/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",DwC,69
|
|
| 140 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",DwC,52
|
|
| 138 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
|
|
| 139 |
verbatimLocality,/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",http://rs.tdwg.org/dwc/terms/,69
|
|
| 140 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
|
|
| 141 | 141 |
//plot/note,/location/notespublic,,, |
| 142 | 142 |
//plot/slopeAspect,/location/slopeaspect/_compass/value,,, |
| 143 | 143 |
//plot/slopeGradient,/location/slopegradient,,, |
| 144 |
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",DwC,19
|
|
| 145 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,DwC,11
|
|
| 146 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,DwC,12
|
|
| 147 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",DwC,20
|
|
| 144 |
occurrenceID,/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",http://rs.tdwg.org/dwc/terms/,19
|
|
| 145 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
|
|
| 146 |
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/,12
|
|
| 147 |
catalogNumber,/location/sourceaccessioncode/_alt/2/_merge/3,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",http://rs.tdwg.org/dwc/terms/,20
|
|
| 148 | 148 |
//plot/plotUniqueIdentifier,/location/sourceaccessioncode/_merge/1/_alt/1,,, |
| 149 | 149 |
//plot/plotName,/location/sourceaccessioncode/_merge/1/_alt/2,,, |
| 150 | 150 |
//plot/plotUniqueIdentifier,/location/sourceaccessioncode/_merge/2/_alt/1,,, |
| 151 | 151 |
//plot/plotName,/location/sourceaccessioncode/_merge/2/_alt/2,,, |
| 152 |
acceptedNameUsage,,,DwC,135 |
|
| 153 |
acceptedNameUsageID,,,DwC,128 |
|
| 154 |
associatedMedia,,,DwC,36 |
|
| 155 |
associatedOccurrences,,,DwC,38 |
|
| 156 |
associatedReferences,,,DwC,37 |
|
| 157 |
associatedSequences,,,DwC,39 |
|
| 158 |
associatedTaxa,,,DwC,40 |
|
| 159 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,DwC,15 |
|
| 160 |
bed,,,DwC,117 |
|
| 161 |
behavior,,,DwC,29 |
|
| 162 |
countryCode,,,DwC,64 |
|
| 163 |
dataGeneralizations,,,DwC,17 |
|
| 164 |
datasetID,,,DwC,10 |
|
| 165 |
datasetName,,,DwC,13 |
|
| 166 |
day,,Brad: OMIT,DwC,50 |
|
| 167 |
dcterms:accessRights,,,DwC,5 |
|
| 168 |
dcterms:bibliographicCitation,,,DwC,6 |
|
| 169 |
dcterms:language,,,DwC,2 |
|
| 170 |
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",DwC,1 |
|
| 171 |
dcterms:references,,,DwC,7 |
|
| 172 |
dcterms:rights,,,DwC,3 |
|
| 173 |
dcterms:rightsHolder,,,DwC,4 |
|
| 174 |
dcterms:type,,,DwC,0 |
|
| 175 |
disposition,,,DwC,33 |
|
| 176 |
dynamicProperties,,,DwC,18 |
|
| 177 |
earliestAgeOrLowestStage,,,DwC,109 |
|
| 178 |
earliestEonOrLowestEonothem,,,DwC,101 |
|
| 179 |
earliestEpochOrLowestSeries,,,DwC,107 |
|
| 180 |
earliestEraOrLowestErathem,,,DwC,103 |
|
| 181 |
earliestPeriodOrLowestSystem,,,DwC,105 |
|
| 182 |
endDayOfYear,,,DwC,47 |
|
| 183 |
eventID,,,DwC,41 |
|
| 184 |
eventRemarks,,,DwC,55 |
|
| 185 |
eventTime,,Brad: OMIT,DwC,45 |
|
| 186 |
footprintSRS,,,DwC,92 |
|
| 187 |
footprintSpatialFit,,,DwC,93 |
|
| 188 |
formation,,,DwC,115 |
|
| 189 |
geodeticDatum,,,DwC,87 |
|
| 190 |
geologicalContextID,,,DwC,100 |
|
| 191 |
georeferenceProtocol,,,DwC,96 |
|
| 192 |
georeferenceRemarks,,,DwC,99 |
|
| 193 |
georeferenceSources,,,DwC,97 |
|
| 194 |
georeferenceVerificationStatus,,,DwC,98 |
|
| 195 |
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,DwC,94 |
|
| 196 |
georeferencedDate,,,DwC,95 |
|
| 197 |
group,,,DwC,114 |
|
| 198 |
higherClassification,,,DwC,141 |
|
| 199 |
higherGeography,,,DwC,58 |
|
| 200 |
higherGeographyID,,,DwC,57 |
|
| 201 |
highestBiostratigraphicZone,,,DwC,112 |
|
| 202 |
identificationID,,,DwC,118 |
|
| 203 |
identificationQualifier,,,DwC,124 |
|
| 204 |
identificationReferences,,,DwC,121 |
|
| 205 |
identificationRemarks,,,DwC,123 |
|
| 206 |
identificationVerificationStatus,,,DwC,122 |
|
| 207 |
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,DwC,25 |
|
| 208 |
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",DwC,24 |
|
| 209 |
informationWithheld,,,DwC,16 |
|
| 210 |
institutionID,,,DwC,8 |
|
| 211 |
island,,,DwC,62 |
|
| 212 |
islandGroup,,,DwC,61 |
|
| 213 |
latestAgeOrHighestStage,,,DwC,110 |
|
| 214 |
latestEonOrHighestEonothem,,,DwC,102 |
|
| 215 |
latestEpochOrHighestSeries,,,DwC,108 |
|
| 216 |
latestEraOrHighestErathem,,,DwC,104 |
|
| 217 |
latestPeriodOrHighestSystem,,,DwC,106 |
|
| 218 |
lifeStage,,,DwC,27 |
|
| 219 |
lithostratigraphicTerms,,,DwC,113 |
|
| 220 |
locationAccordingTo,,,DwC,78 |
|
| 221 |
locationID,,,DwC,56 |
|
| 222 |
locationRemarks,,,DwC,79 |
|
| 223 |
lowestBiostratigraphicZone,,,DwC,111 |
|
| 224 |
maximumDistanceAboveSurfaceInMeters,,,DwC,77 |
|
| 225 |
measurementAccuracy,,,DwC,169 |
|
| 226 |
measurementDeterminedBy,,,DwC,172 |
|
| 227 |
measurementDeterminedDate,,,DwC,171 |
|
| 228 |
measurementID,,,DwC,166 |
|
| 229 |
measurementMethod,,,DwC,173 |
|
| 230 |
measurementRemarks,,,DwC,174 |
|
| 231 |
measurementType,,,DwC,167 |
|
| 232 |
measurementUnit,,,DwC,170 |
|
| 233 |
measurementValue,,,DwC,168 |
|
| 234 |
member,,,DwC,116 |
|
| 235 |
minimumDistanceAboveSurfaceInMeters,,,DwC,76 |
|
| 236 |
month,,,DwC,49 |
|
| 237 |
municipality,,,DwC,67 |
|
| 238 |
nameAccordingTo,,,DwC,138 |
|
| 239 |
nameAccordingToID,,,DwC,131 |
|
| 240 |
namePublishedIn,,,DwC,139 |
|
| 241 |
namePublishedInID,,,DwC,132 |
|
| 242 |
namePublishedInYear,,,DwC,140 |
|
| 243 |
nomenclaturalCode,,,DwC,155 |
|
| 244 |
nomenclaturalStatus,,,DwC,157 |
|
| 245 |
occurrenceRemarks,,,DwC,21 |
|
| 246 |
occurrenceStatus,,,DwC,31 |
|
| 247 |
originalNameUsage,,,DwC,137 |
|
| 248 |
originalNameUsageID,,,DwC,130 |
|
| 249 |
otherCatalogNumbers,,,DwC,34 |
|
| 250 |
ownerInstitutionCode,,,DwC,14 |
|
| 251 |
parentNameUsage,,,DwC,136 |
|
| 252 |
parentNameUsageID,,,DwC,129 |
|
| 253 |
pointRadiusSpatialFit,,,DwC,90 |
|
| 254 |
preparations,,Brad: OMIT,DwC,32 |
|
| 255 |
previousIdentifications,,Brad: OMIT,DwC,35 |
|
| 256 |
relatedResourceID,,Brad: OMIT,DwC,161 |
|
| 257 |
relationshipAccordingTo,,,DwC,163 |
|
| 258 |
relationshipEstablishedDate,,,DwC,164 |
|
| 259 |
relationshipOfResource,,Brad: OMIT,DwC,162 |
|
| 260 |
relationshipRemarks,,,DwC,165 |
|
| 261 |
reproductiveCondition,,,DwC,28 |
|
| 262 |
resourceID,,,DwC,160 |
|
| 263 |
resourceRelationshipID,,,DwC,159 |
|
| 264 |
samplingEffort,,,DwC,43 |
|
| 265 |
samplingProtocol,,,DwC,42 |
|
| 266 |
scientificNameID,,,DwC,127 |
|
| 267 |
startDayOfYear,,,DwC,46 |
|
| 268 |
subgenus,,,DwC,148 |
|
| 269 |
taxonConceptID,,,DwC,133 |
|
| 270 |
taxonID,,,DwC,126 |
|
| 271 |
taxonRank,,,DwC,151 |
|
| 272 |
taxonomicStatus,,,DwC,156 |
|
| 273 |
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,DwC,125 |
|
| 274 |
verbatimCoordinateSystem,,,DwC,83 |
|
| 275 |
verbatimCoordinates,,,DwC,80 |
|
| 276 |
verbatimDepth,,,DwC,73 |
|
| 277 |
verbatimElevation,,,DwC,70 |
|
| 278 |
verbatimEventDate,,,DwC,51 |
|
| 279 |
verbatimSRS,,,DwC,84 |
|
| 280 |
verbatimTaxonRank,,,DwC,152 |
|
| 281 |
vernacularName,,,DwC,154 |
|
| 282 |
waterBody,,,DwC,60 |
|
| 283 |
year,,,DwC,48 |
|
| 152 |
acceptedNameUsage,,,http://rs.tdwg.org/dwc/terms/,135 |
|
| 153 |
acceptedNameUsageID,,,http://rs.tdwg.org/dwc/terms/,128 |
|
| 154 |
associatedMedia,,,http://rs.tdwg.org/dwc/terms/,36 |
|
| 155 |
associatedOccurrences,,,http://rs.tdwg.org/dwc/terms/,38 |
|
| 156 |
associatedReferences,,,http://rs.tdwg.org/dwc/terms/,37 |
|
| 157 |
associatedSequences,,,http://rs.tdwg.org/dwc/terms/,39 |
|
| 158 |
associatedTaxa,,,http://rs.tdwg.org/dwc/terms/,40 |
|
| 159 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,http://rs.tdwg.org/dwc/terms/,15 |
|
| 160 |
bed,,,http://rs.tdwg.org/dwc/terms/,117 |
|
| 161 |
behavior,,,http://rs.tdwg.org/dwc/terms/,29 |
|
| 162 |
countryCode,,,http://rs.tdwg.org/dwc/terms/,64 |
|
| 163 |
dataGeneralizations,,,http://rs.tdwg.org/dwc/terms/,17 |
|
| 164 |
datasetID,,,http://rs.tdwg.org/dwc/terms/,10 |
|
| 165 |
datasetName,,,http://rs.tdwg.org/dwc/terms/,13 |
|
| 166 |
day,,Brad: OMIT,http://rs.tdwg.org/dwc/terms/,50 |
|
| 167 |
dcterms:accessRights,,,http://rs.tdwg.org/dwc/terms/,5 |
|
| 168 |
dcterms:bibliographicCitation,,,http://rs.tdwg.org/dwc/terms/,6 |
|
| 169 |
dcterms:language,,,http://rs.tdwg.org/dwc/terms/,2 |
|
| 170 |
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",http://rs.tdwg.org/dwc/terms/,1 |
|
| 171 |
dcterms:references,,,http://rs.tdwg.org/dwc/terms/,7 |
|
| 172 |
dcterms:rights,,,http://rs.tdwg.org/dwc/terms/,3 |
|
| 173 |
dcterms:rightsHolder,,,http://rs.tdwg.org/dwc/terms/,4 |
|
| 174 |
dcterms:type,,,http://rs.tdwg.org/dwc/terms/,0 |
|
| 175 |
disposition,,,http://rs.tdwg.org/dwc/terms/,33 |
|
| 176 |
dynamicProperties,,,http://rs.tdwg.org/dwc/terms/,18 |
|
| 177 |
earliestAgeOrLowestStage,,,http://rs.tdwg.org/dwc/terms/,109 |
|
| 178 |
earliestEonOrLowestEonothem,,,http://rs.tdwg.org/dwc/terms/,101 |
|
| 179 |
earliestEpochOrLowestSeries,,,http://rs.tdwg.org/dwc/terms/,107 |
|
| 180 |
earliestEraOrLowestErathem,,,http://rs.tdwg.org/dwc/terms/,103 |
|
| 181 |
earliestPeriodOrLowestSystem,,,http://rs.tdwg.org/dwc/terms/,105 |
|
| 182 |
endDayOfYear,,,http://rs.tdwg.org/dwc/terms/,47 |
|
| 183 |
eventID,,,http://rs.tdwg.org/dwc/terms/,41 |
|
| 184 |
eventRemarks,,,http://rs.tdwg.org/dwc/terms/,55 |
|
| 185 |
eventTime,,Brad: OMIT,http://rs.tdwg.org/dwc/terms/,45 |
|
| 186 |
footprintSRS,,,http://rs.tdwg.org/dwc/terms/,92 |
|
| 187 |
footprintSpatialFit,,,http://rs.tdwg.org/dwc/terms/,93 |
|
| 188 |
formation,,,http://rs.tdwg.org/dwc/terms/,115 |
|
| 189 |
geodeticDatum,,,http://rs.tdwg.org/dwc/terms/,87 |
|
| 190 |
geologicalContextID,,,http://rs.tdwg.org/dwc/terms/,100 |
|
| 191 |
georeferenceProtocol,,,http://rs.tdwg.org/dwc/terms/,96 |
|
| 192 |
georeferenceRemarks,,,http://rs.tdwg.org/dwc/terms/,99 |
|
| 193 |
georeferenceSources,,,http://rs.tdwg.org/dwc/terms/,97 |
|
| 194 |
georeferenceVerificationStatus,,,http://rs.tdwg.org/dwc/terms/,98 |
|
| 195 |
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,http://rs.tdwg.org/dwc/terms/,94 |
|
| 196 |
georeferencedDate,,,http://rs.tdwg.org/dwc/terms/,95 |
|
| 197 |
group,,,http://rs.tdwg.org/dwc/terms/,114 |
|
| 198 |
higherClassification,,,http://rs.tdwg.org/dwc/terms/,141 |
|
| 199 |
higherGeography,,,http://rs.tdwg.org/dwc/terms/,58 |
|
| 200 |
higherGeographyID,,,http://rs.tdwg.org/dwc/terms/,57 |
|
| 201 |
highestBiostratigraphicZone,,,http://rs.tdwg.org/dwc/terms/,112 |
|
| 202 |
identificationID,,,http://rs.tdwg.org/dwc/terms/,118 |
|
| 203 |
identificationQualifier,,,http://rs.tdwg.org/dwc/terms/,124 |
|
| 204 |
identificationReferences,,,http://rs.tdwg.org/dwc/terms/,121 |
|
| 205 |
identificationRemarks,,,http://rs.tdwg.org/dwc/terms/,123 |
|
| 206 |
identificationVerificationStatus,,,http://rs.tdwg.org/dwc/terms/,122 |
|
| 207 |
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,http://rs.tdwg.org/dwc/terms/,25 |
|
| 208 |
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",http://rs.tdwg.org/dwc/terms/,24 |
|
| 209 |
informationWithheld,,,http://rs.tdwg.org/dwc/terms/,16 |
|
| 210 |
institutionID,,,http://rs.tdwg.org/dwc/terms/,8 |
|
| 211 |
island,,,http://rs.tdwg.org/dwc/terms/,62 |
|
| 212 |
islandGroup,,,http://rs.tdwg.org/dwc/terms/,61 |
|
| 213 |
latestAgeOrHighestStage,,,http://rs.tdwg.org/dwc/terms/,110 |
|
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, DwC1-DwC2.specimens.csv: Sources: Replaced DwC with http://rs.tdwg.org/dwc/terms/, because DwC terms can come from many places but the DwC source referred specifically to this web page