| 1 |
235
|
aaronmk
|
os = $(shell uname)
|
| 2 |
224
|
aaronmk
|
|
| 3 |
235
|
aaronmk
|
SED = sed -$(if $(filter Darwin,$(os)),E,r)
|
| 4 |
|
|
|
| 5 |
240
|
aaronmk
|
#####
|
| 6 |
224
|
aaronmk
|
|
| 7 |
383
|
aaronmk
|
all: _always misc
|
| 8 |
197
|
aaronmk
|
$(MAKE) plots
|
| 9 |
198
|
aaronmk
|
./join VegX VegBIEN
|
| 10 |
199
|
aaronmk
|
./review
|
| 11 |
150
|
aaronmk
|
|
| 12 |
223
|
aaronmk
|
.SUFFIXES:
|
| 13 |
|
|
|
| 14 |
383
|
aaronmk
|
_always:
|
| 15 |
|
|
.PHONY: _always
|
| 16 |
188
|
aaronmk
|
|
| 17 |
382
|
aaronmk
|
misc := schemas/vegbien.sql schemas/vegbien_empty.sql
|
| 18 |
240
|
aaronmk
|
|
| 19 |
382
|
aaronmk
|
all = $(wildcard for_review/*.csv) \
|
| 20 |
|
|
$(filter-out VegX-%,$(wildcard *-VegBIEN.*.csv)) VegX-*.plots.csv $(misc)
|
| 21 |
196
|
aaronmk
|
|
| 22 |
383
|
aaronmk
|
clean: _always
|
| 23 |
196
|
aaronmk
|
$(RM) $(all)
|
| 24 |
188
|
aaronmk
|
|
| 25 |
380
|
aaronmk
|
%:: %.make
|
| 26 |
|
|
./$< >$@
|
| 27 |
|
|
.PRECIOUS: %
|
| 28 |
|
|
|
| 29 |
240
|
aaronmk
|
#####
|
| 30 |
198
|
aaronmk
|
|
| 31 |
240
|
aaronmk
|
misc: $(misc)
|
| 32 |
|
|
.PRECIOUS: $(misc)
|
| 33 |
|
|
|
| 34 |
350
|
aaronmk
|
bin = ../bin
|
| 35 |
|
|
repl = $(bin)/repl
|
| 36 |
|
|
sort = $(bin)/sort 1 0
|
| 37 |
|
|
chRoot = $(bin)/ch_root <$< >$@
|
| 38 |
240
|
aaronmk
|
empty = $(SED) -n \
|
| 39 |
|
|
's/^CREATE TABLE ([0-9A-Za-z_]+) \($$/TRUNCATE \1 CASCADE;/p' <$< >$@
|
| 40 |
|
|
|
| 41 |
223
|
aaronmk
|
schemas/vegbien_empty.sql: schemas/vegbien.sql
|
| 42 |
|
|
$(empty)
|
| 43 |
|
|
|
| 44 |
383
|
aaronmk
|
VegX-VegBIEN.organisms.csv: _always
|
| 45 |
359
|
aaronmk
|
$(bin)/in_place $@ $(sort)
|
| 46 |
350
|
aaronmk
|
|
| 47 |
240
|
aaronmk
|
#####
|
| 48 |
212
|
aaronmk
|
|
| 49 |
383
|
aaronmk
|
plots: _always $(subst .organisms.,.plots.,$(wildcard VegX-*.organisms.csv))
|
| 50 |
197
|
aaronmk
|
|
| 51 |
188
|
aaronmk
|
chRoot2PlotsLeftVegx =\
|
| 52 |
|
|
env \
|
| 53 |
|
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 54 |
|
|
left_out_root='/*s/plotObservation' \
|
| 55 |
|
|
$(chRoot)
|
| 56 |
|
|
|
| 57 |
|
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 58 |
|
|
$(chRoot2PlotsVegxVegbien)
|
| 59 |
|
|
chRoot2PlotsVegxVegbien =\
|
| 60 |
|
|
env \
|
| 61 |
200
|
aaronmk
|
right_in_root='/taxonoccurrence/*_ID/plotevent' \
|
| 62 |
188
|
aaronmk
|
right_out_root='/plotevent' \
|
| 63 |
|
|
$(chRoot2PlotsLeftVegx)
|
