Revision 3855
Added by Aaron Marcuse-Kubitza over 12 years ago
| mappings/VegX-VegCSV.stems.csv | ||
|---|---|---|
| 72 | 72 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit",identificationQualifier,,http://rs.tdwg.org/dwc/terms/,124 |
| 73 | 73 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,individualCount,,http://rs.tdwg.org/dwc/terms/,25 |
| 74 | 74 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,individualCount,,http://rs.tdwg.org/dwc/terms/,25 |
| 75 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,individualOrganismObservation.uniqueID,Shortened for standardization,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-organismobservation.xsd#/IndividualOrganismObservationType, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plot.xsd#/PlotType/plotUniqueIdentifier",
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/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,individualOrganismObservation.uniqueID,Shortened for standardization,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotUniqueIdentifier",
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| 76 | 76 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ssp])/tcs:Name",infraspecificEpithet,,http://rs.tdwg.org/dwc/terms/,150 |
| 77 | 77 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=reg])/tcs:Name",kingdom,,http://rs.tdwg.org/dwc/terms/,142 |
| 78 | 78 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,lianaInfestation,,http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotObservations,58 |
| 79 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium,magnesium,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,4
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/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium,magnesium,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,4
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| 80 | 80 |
/*s/plot/geospatial/maximumDepthInMeters,maximumDepthInMeters,,http://rs.tdwg.org/dwc/terms/,75 |
| 81 | 81 |
/*s/plot/geospatial/maximumElevationInMeters,maximumElevationInMeters,,http://rs.tdwg.org/dwc/terms/,72 |
| 82 | 82 |
/*s/plot/geospatial/minimumDepthInMeters,minimumDepthInMeters,,http://rs.tdwg.org/dwc/terms/,74 |
| 83 | 83 |
/*s/plot/geospatial/minimumElevationInMeters,minimumElevationInMeters,,http://rs.tdwg.org/dwc/terms/,71 |
| 84 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen,nitrogen,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,5
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| 84 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen,nitrogen,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,5
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| 85 | 85 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ord])/tcs:Name",order,,http://rs.tdwg.org/dwc/terms/,145 |
| 86 | 86 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value,organic,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,6 |
| 87 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,ph,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,6
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/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus,phosphorus,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,2
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| 87 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,ph,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,6
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| 88 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus,phosphorus,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,2
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| 89 | 89 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=phyl_div])/tcs:Name",phylum,,http://rs.tdwg.org/dwc/terms/,143 |
| 90 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,potassium,Spelling corrected,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,3
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/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,potassium,Spelling corrected,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,3
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| 91 | 91 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value,sand,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,8 |
| 92 | 92 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name",scientificName,,http://rs.tdwg.org/dwc/terms/,134 |
| 93 | 93 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",scientificNameAuthorship,,http://rs.tdwg.org/dwc/terms/,153 |
| mappings/VegCSV-VegBIEN.specimens.csv | ||
|---|---|---|
| 39 | 39 |
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity,Expanded for clarity,"http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs, http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotMetadata",13 |
| 40 | 40 |
clay,/location/locationevent/soilobs/clay,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,10 |
| 41 | 41 |
conductivity,/location/locationevent/soilobs/conductivity,,http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotMetadata,45 |
| 42 |
magnesium,/location/locationevent/soilobs/magnesium,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,4
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nitrogen,/location/locationevent/soilobs/nitrogen,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,5
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magnesium,/location/locationevent/soilobs/magnesium,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,4
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nitrogen,/location/locationevent/soilobs/nitrogen,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,5
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| 44 | 44 |
organic,/location/locationevent/soilobs/organic,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,6 |
| 45 |
ph,/location/locationevent/soilobs/ph,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,6
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phosphorus,/location/locationevent/soilobs/phosphorus,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,2
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potassium,/location/locationevent/soilobs/potassium,Spelling corrected,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plotobservation.xsd#/AbioticObservationType,3
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ph,/location/locationevent/soilobs/ph,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,6
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phosphorus,/location/locationevent/soilobs/phosphorus,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,2
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potassium,/location/locationevent/soilobs/potassium,Spelling corrected,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,3
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| 48 | 48 |
sand,/location/locationevent/soilobs/sand,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,8 |
| 49 | 49 |
silt,/location/locationevent/soilobs/silt,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,9 |
| 50 | 50 |
sodium,/location/locationevent/soilobs/sodium,Expanded for clarity,http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotMetadata,41 |
| ... | ... | |
| 78 | 78 |
authorPlantCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"""{"" sorts it with other _if:[name=specimenreplicate_via]s","http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#observation, http://vegbiendev.nceas.ucsb.edu/phppgadmin/tblproperties.php?subject=table&table=plantobservation&server=localhost%3A5432%3Aallow&database=vegbien&schema=public",4
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| 79 | 79 |
//*s/individualOrganismObservation/height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/overallheight,,, |
| 80 | 80 |
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/overallheight,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#stemCount,4 |
| 81 |
individualOrganismObservation.uniqueID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Shortened for standardization; ""{"" sorts it with other _if:[name=specimenreplicate_via]s","http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-organismobservation.xsd#/IndividualOrganismObservationType, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plot.xsd#/PlotType/plotUniqueIdentifier",
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individualOrganismObservation.uniqueID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Shortened for standardization; ""{"" sorts it with other _if:[name=specimenreplicate_via]s","http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotUniqueIdentifier",
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| 82 | 82 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,,http://rs.tdwg.org/dwc/terms/,25 |
| 83 | 83 |
//individualOrganismObservation/diameterBaseDistance[value=0]/diameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter,,, |
| 84 | 84 |
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",,http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotObservations,57 |
| ... | ... | |
| 96 | 96 |
//*s/individualOrganismObservation/relativePlotPosition/relativeY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,,, |
| 97 | 97 |
//*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relativePlotPosition/relativeY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,,, |
| 98 | 98 |
growthForm,/location/locationevent/taxonoccurrence/growthform,a.k.a. habit (SALVIAS: http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data),http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#observation,62 |
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individualOrganismObservation.uniqueID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Shortened for standardization; ""{"" sorts it with other _if:[name=specimenreplicate_via]s","http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-organismobservation.xsd#/IndividualOrganismObservationType, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg-plot.xsd#/PlotType/plotUniqueIdentifier",
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individualOrganismObservation.uniqueID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Shortened for standardization; ""{"" sorts it with other _if:[name=specimenreplicate_via]s","http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotUniqueIdentifier",
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| 100 | 100 |
authorPlantCode,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"""{"" sorts it with other _if:[name=specimenreplicate_via]s","http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#observation, http://vegbiendev.nceas.ucsb.edu/phppgadmin/tblproperties.php?subject=table&table=plantobservation&server=localhost%3A5432%3Aallow&database=vegbien&schema=public",4
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| 101 | 101 |
scientificName,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,,http://rs.tdwg.org/dwc/terms/,134 |
| 102 | 102 |
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",,http://rs.tdwg.org/dwc/terms/,151 |
Also available in: Unified diff
mappings/VegX-VegCSV.stems.csv: Corrected sources of VegX names to point to the appropriate element in veg.xsd, rather than the appropriate type, because the names we used actually came from veg.xsd's top-level elements rather than from the type names