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Revision 3857

mappings/VegX-VegCSV.stems.csv: Mapped VegX plot terms except unique keys

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mappings/VegX-VegCSV.stems.csv
19 19
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,//individualOrganismObservation/diameterBaseDistance[baseDistance[]/value=1.37]/diameter,,,
20 20
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,//individualOrganismObservation/diameterBaseDistance[value=0]/diameter,,,
21 21
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,//ordinal/coverPercent,,,
22
/*s/plot/area,//plot/area,,,
23
/*s/plot/landform,//plot/landform,,,
24
/*s/plot/locationNarrative,//plot/locationNarrative,,,
25
/*s/plot/note,//plot/note,,,
26 22
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,//plot/plotName,,,
27 23
/*s/plot/plotName,//plot/plotName,,,
28 24
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,//plot/plotUniqueIdentifier,,,
29 25
/*s/plot/plotUniqueIdentifier,//plot/plotUniqueIdentifier,,,
30
/*s/plot/slopeAspect,//plot/slopeAspect,,,
31
/*s/plot/slopeGradient,//plot/slopeGradient,,,
32 26
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=method]/*ID/method/name,//plotObservation/simpleUserdefined[name=method]/*ID/method/name,,,
33 27
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=precipitation]/value,//plotObservation/simpleUserdefined[name=precipitation]/value,,,
34 28
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],//project/title[@id=name],,,
......
74 68
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,individualOrganismObservation.uniqueID,Field name shortened for standardization,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotUniqueIdentifier",
75 69
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=ssp])/tcs:Name",infraspecificEpithet,,http://rs.tdwg.org/dwc/terms/,150
76 70
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=reg])/tcs:Name",kingdom,,http://rs.tdwg.org/dwc/terms/,142
71
/*s/plot/landform,landform,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
77 72
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,lianaInfestation,,http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotObservations,58
73
/*s/plot/locationNarrative,locationNarrative,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
78 74
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium,magnesium,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,4
79 75
/*s/plot/geospatial/maximumDepthInMeters,maximumDepthInMeters,,http://rs.tdwg.org/dwc/terms/,75
80 76
/*s/plot/geospatial/maximumElevationInMeters,maximumElevationInMeters,,http://rs.tdwg.org/dwc/terms/,72
......
86 82
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,ph,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,6
87 83
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus,phosphorus,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,2
88 84
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=phyl_div])/tcs:Name",phylum,,http://rs.tdwg.org/dwc/terms/,143
85
/*s/plot/note,plot.note,Table name included to distinguish from other notes,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
86
/*s/plot/area,plotArea,Table name prefixed for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
89 87
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,potassium,Spelling corrected,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation,3
90 88
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=sourceAccessionCode],project.uniqueID,Field name shortened for standardization,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/projects/project, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotUniqueIdentifier",
91 89
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value,sand,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,8
92 90
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name",scientificName,,http://rs.tdwg.org/dwc/terms/,134
93 91
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",scientificNameAuthorship,,http://rs.tdwg.org/dwc/terms/,153
94 92
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value,silt,,http://vegbank.org/vegdocs/design/erd/vegbank_erd.pdf#soilObs,9
93
/*s/plot/slopeAspect,slopeAspect,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
94
/*s/plot/slopeGradient,slopeGradient,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
95 95
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,sodium,Expanded for clarity,http://nimoy.nceas.ucsb.edu/phpmyadmin/tbl_structure.php?db=salvias_plots&table=plotMetadata,41
96 96
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",specificEpithet,,http://rs.tdwg.org/dwc/terms/,149
97 97
/*s/plot/location[placeType=state]/placeName,stateProvince,,http://rs.tdwg.org/dwc/terms/,65
mappings/VegCSV-VegBIEN.specimens.csv
1 1
VegCSV[DwC],VegBIEN:,Comments,Source,Order
2
//plot/area,/location/area,,,
2
plotArea,/location/area,Table name prefixed for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
3 3
verbatimElevation,/location/elevation/_alt/1,,http://rs.tdwg.org/dwc/terms/,70
4 4
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_rangeEnd/value",,http://rs.tdwg.org/dwc/terms/,72
5 5
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value",,http://rs.tdwg.org/dwc/terms/,71
6 6
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value",,http://rs.tdwg.org/dwc/terms/,71
7 7
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_rangeEnd/value",,http://rs.tdwg.org/dwc/terms/,72
8
//plot/landform,/location/landform,,,
8
landform,/location/landform,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
9 9
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy,,http://rs.tdwg.org/dwc/terms/,88
10 10
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,http://rs.tdwg.org/dwc/terms/,89
11 11
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,,http://rs.tdwg.org/dwc/terms/,91
......
122 122
//*s/plotObservation/temperature,/location/locationevent/temperature,,,
123 123
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,75
124 124
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://rs.tdwg.org/dwc/terms/,74
125
//plot/locationNarrative,/location/locationnarrative,,,
125
locationNarrative,/location/locationnarrative,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
126 126
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/,68
127 127
verbatimLocality,/location/locationnarrative/_merge/2,,http://rs.tdwg.org/dwc/terms/,69
128 128
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/,52
129
//plot/note,/location/notespublic,,,
130
//plot/slopeAspect,/location/slopeaspect/_compass/value,,,
131
//plot/slopeGradient,/location/slopegradient,,,
129
plot.note,/location/notespublic,Table name included to distinguish from other notes,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
130
slopeAspect,/location/slopeaspect/_compass/value,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
131
slopeGradient,/location/slopegradient,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot,
132 132
occurrenceID,/location/sourceaccessioncode/_alt/1,,http://rs.tdwg.org/dwc/terms/,19
133 133
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1,,http://rs.tdwg.org/dwc/terms/,11
134 134
collectionCode,/location/sourceaccessioncode/_alt/2/_merge/2,,http://rs.tdwg.org/dwc/terms/,12
mappings/VegCSV.self.specimens.csv
17 17
//individualOrganismObservation/diameterBaseDistance[baseDistance[]/value=1.37]/diameter,//individualOrganismObservation/diameterBaseDistance[baseDistance[]/value=1.37]/diameter
18 18
//individualOrganismObservation/diameterBaseDistance[value=0]/diameter,//individualOrganismObservation/diameterBaseDistance[value=0]/diameter
19 19
//ordinal/coverPercent,//ordinal/coverPercent
20
//plot/area,//plot/area
21
//plot/landform,//plot/landform
22
//plot/locationNarrative,//plot/locationNarrative
23
//plot/note,//plot/note
24 20
//plot/plotName,//plot/plotName
25 21
//plot/plotUniqueIdentifier,//plot/plotUniqueIdentifier
26
//plot/slopeAspect,//plot/slopeAspect
27
//plot/slopeGradient,//plot/slopeGradient
28 22
//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//plotObservation/simpleUserdefined[name=method]/*ID/method/name
29 23
//plotObservation/simpleUserdefined[name=precipitation]/value,//plotObservation/simpleUserdefined[name=precipitation]/value
30 24
//project/title[@id=name],//project/title[@id=name]
......
137 131
island,island
138 132
islandGroup,islandGroup
139 133
kingdom,kingdom
134
landform,landform
140 135
latestAgeOrHighestStage,latestAgeOrHighestStage
141 136
latestEonOrHighestEonothem,latestEonOrHighestEonothem
142 137
latestEpochOrHighestSeries,latestEpochOrHighestSeries
......
148 143
locality,locality
149 144
locationAccordingTo,locationAccordingTo
150 145
locationID,locationID
146
locationNarrative,locationNarrative
151 147
locationRemarks,locationRemarks
152 148
lowestBiostratigraphicZone,lowestBiostratigraphicZone
153 149
magnesium,magnesium
......
191 187
ph,ph
192 188
phosphorus,phosphorus
193 189
phylum,phylum
190
plot.note,plot.note
191
plotArea,plotArea
194 192
pointRadiusSpatialFit,pointRadiusSpatialFit
195 193
potassium,potassium
196 194
preparations,preparations
......
214 212
scientificNameID,scientificNameID
215 213
sex,sex
216 214
silt,silt
215
slopeAspect,slopeAspect
216
slopeGradient,slopeGradient
217 217
sodium,sodium
218 218
specificEpithet,specificEpithet
219 219
startDayOfYear,startDayOfYear

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