Revision 3905
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/SALVIAS/test/import.organisms.xml.ref | ||
|---|---|---|
| 39 | 39 |
</_alt> |
| 40 | 40 |
</catalognumber_dwc> |
| 41 | 41 |
<collectiondate><_date><date>$census_date</date></_date></collectiondate> |
| 42 |
<description><_merge><1>$Notes</1></_merge></description> |
|
| 42 | 43 |
</specimenreplicate> |
| 43 | 44 |
</specimenreplicate_id> |
| 44 | 45 |
</voucher> |
| ... | ... | |
| 54 | 55 |
</_alt> |
| 55 | 56 |
</catalognumber_dwc> |
| 56 | 57 |
<collectiondate><_date><date>$census_date</date></_date></collectiondate> |
| 58 |
<description><_merge><1>$Notes</1></_merge></description> |
|
| 57 | 59 |
</specimenreplicate> |
| 58 | 60 |
</plantobservation> |
| 59 | 61 |
</aggregateoccurrence> |
| ... | ... | |
| 104 | 106 |
</userdefined_id> |
| 105 | 107 |
<definedvalue>$liana_infestation</definedvalue> |
| 106 | 108 |
</definedvalue> |
| 107 |
<definedvalue fkey="tablerecord_id"> |
|
| 108 |
<userdefined_id> |
|
| 109 |
<userdefined> |
|
| 110 |
<tablename>stemobservation</tablename> |
|
| 111 |
<userdefinedname>notes</userdefinedname> |
|
| 112 |
</userdefined> |
|
| 113 |
</userdefined_id> |
|
| 114 |
<definedvalue>$Notes</definedvalue> |
|
| 115 |
</definedvalue> |
|
| 116 | 109 |
<diameterbreastheight>$temp_dbh</diameterbreastheight> |
| 117 | 110 |
<heightfirstbranch>$ht_first_branch_m</heightfirstbranch> |
| 118 | 111 |
<stemtag> |
| ... | ... | |
| 299 | 292 |
</sourceaccessioncode> |
| 300 | 293 |
</location> |
| 301 | 294 |
</VegBIEN> |
| 302 |
Inserted 50 new rows into database |
|
| 295 |
Inserted 47 new rows into database |
|
| inputs/SALVIAS/maps/VegX.organisms.csv | ||
|---|---|---|
| 57 | 57 |
canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,Brad: Should also be userDefined for VegBank. |
| 58 | 58 |
canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,Brad: Should also be userDefined for VegBank. |
| 59 | 59 |
liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,Brad: Should also be userDefined for VegBank. |
| 60 |
Notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
|
|
| 60 |
Notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text, |
|
| 61 | 61 |
temp_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter, |
| 62 | 62 |
temp_liandbh,, |
| 63 | 63 |
tmp_del,, |
| inputs/SALVIAS/maps/VegX.organisms.full.csv | ||
|---|---|---|
| 1 | 1 |
SALVIAS,VegX:,Comments |
| 2 |
Notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
|
|
| 2 |
Notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text, |
|
| 3 | 3 |
temp_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter, |
| 4 | 4 |
canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,Brad: Should also be userDefined for VegBank. |
| 5 | 5 |
canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,Brad: Should also be userDefined for VegBank. |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 8 | 8 |
coll_number,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string |
| 9 | 9 |
SourceVoucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 10 | 10 |
census_date,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/collectiondate/_*/date, |
| 11 |
Notes,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/description/_merge/1, |
|
| 11 | 12 |
coll_number,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string |
| 12 | 13 |
SourceVoucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 13 | 14 |
census_date,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/collectiondate/_*/date, |
| 15 |
Notes,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/description/_merge/1, |
|
| 14 | 16 |
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
| 15 | 17 |
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
| 16 | 18 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
| ... | ... | |
| 21 | 23 |
canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank. |
| 22 | 24 |
canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank. |
| 23 | 25 |
liana_infestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank. |
| 24 |
Notes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 25 | 26 |
temp_dbh,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight, |
| 26 | 27 |
ht_first_branch_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 27 | 28 |
tag1,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2" |
| mappings/VegX.self.stems.csv | ||
|---|---|---|
| 18 | 18 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value |
| 19 | 19 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName |
| 20 | 20 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name |
| 21 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text |
|
| 21 | 22 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value |
| 22 | 23 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text |
| 23 | 24 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1] |
| mappings/VegX.self.plots.csv | ||
|---|---|---|
| 18 | 18 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value |
| 19 | 19 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName |
| 20 | 20 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name |
| 21 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text |
|
| 21 | 22 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value |
| 22 | 23 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text |
| 23 | 24 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1] |
| mappings/VegX.self.organisms.csv | ||
|---|---|---|
| 18 | 18 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value |
| 19 | 19 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName |
| 20 | 20 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name |
| 21 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text |
|
| 21 | 22 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value |
| 22 | 23 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text |
| 23 | 24 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1] |
| mappings/for_review/VegX-VegBIEN.stems.csv | ||
|---|---|---|
| 48 | 48 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType",//locationevent/taxonoccurrence, |
| 49 | 49 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher,//locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc, |
| 50 | 50 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value,//locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectiondate, |
| 51 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,//locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/description, |
|
| 51 | 52 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher,//locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc, |
| 52 | 53 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value,//locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectiondate, |
| 54 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,//locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description, |
|
| 53 | 55 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,//aggregateoccurrence/count, |
| 54 | 56 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,//aggregateoccurrence/cover, |
| 55 | 57 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue", |
| mappings/VegX-VegBIEN.stems.csv | ||
|---|---|---|
| 48 | 48 |
"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType",/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/cond/_eq:[right=direct]/left, |
| 49 | 49 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc, |
| 50 | 50 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/collectiondate, |
| 51 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/description/_merge/1, |
|
| 51 | 52 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc, |
| 52 | 53 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/collectiondate, |
| 54 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/description/_merge/1, |
|
| 53 | 55 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 54 | 56 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
| 55 | 57 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
Also available in: Unified diff
inputs/SALVIAS/maps/VegX.organisms.csv: Map organism notes to different place than stem notes, because these are separate fields