Project

General

Profile

« Previous | Next » 

Revision 3925

Added by Aaron Marcuse-Kubitza over 12 years ago

plots inputs: Remapped all VegX via maps to VegCSV. See steps at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegX-%3EVegCSV&gt;.

View differences:

inputs/Madidi/maps/VegX.organisms.full.csv
1 
Madidi,VegX:,Comments
2 
Autor (revised),,
3 
Basal area,,
4 
Bole height,,
5 
Circumference,,
6 
Common name,,
7 
Crown position,,
8 
Crown shape,,
9 
Determined by,,
10 
Diameter,,
11 
Expedition,,
12 
Expedition specimen,,
13 
Family (revised),,
14 
Field family,,
15 
Field name,,
16 
Genera,,
17 
Habit,,
18 
Index collector,,
19 
Inventory code,,
20 
Inventory name,,
21 
Liana presence,,
22 
Number of inventory (expedition),,
23 
Number of inventory (general),,
24 
Number of subplot,,
25 
Observations,,
26 
Phenology,,
27 
Plot X,,
28 
Plot Y,,
29 
Plot specimen,,
30 
Project specimen,,
31 
Qualifier,,
32 
Similar specimen,,
33 
Specie+autor,,
34 
Species and morphotypes,,
35 
Specific epithet,,
36 
Specimen,,
37 
Subplot X,,
38 
Subplot Y,,
39 
Tag number,,
40 
Total height,,
41 
Tree number,,
42 
Trunk,,
43 
"Type Inventory (C, PP, TP)",,
inputs/Madidi/maps/VegX.plots.csv
1 
Madidi,VegX:,Comments
2 
Inventory number,,Not globally unique
3 
Expedition number,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=sourceAccessionCode],Consistent (globally unique) between PPM and PT data
4 
Expedition name,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],Consistent (globally unique) between PPM and PT data
5 
Number of inventory (expedition),,The number of the event within the project
6 
Inventory name,/*s/plot/plotName,
7 
Inventory code,/*s/plot/plotUniqueIdentifier,
8 
First evaluation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate,
9 
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
10 
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
11 
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
12 
Area,/*s/plot/area,
13 
Number of stems,,Do we want to store this data?
14 
Number of trees,,Do we want to store this data?
15 
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
16 
Latitude,/*s/plot/geospatial/DecimalLatitude/_alt/1,
17 
Longitude,/*s/plot/geospatial/DecimalLongitude/_alt/1,
18 
Latitude (DMS),/*s/plot/geospatial/DecimalLatitude/_alt/2,
19 
Longitude (DMS),/*s/plot/geospatial/DecimalLongitude/_alt/2,
20 
Altitude,/*s/plot/geospatial/verbatimElevation,
21 
Minimum altitude,/*s/plot/geospatial/minimumElevationInMeters,
22 
Locality,/*s/plot/locationNarrative,
23 
Locality description,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,Often begins with the text in Vegetation type
24 
Direction,/*s/plot/slopeAspect/_alt/1,Part files provide either this field or Direction
25 
Vegetation type,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,
26 
Topographical situation,/*s/plot/landform,
27 
Slope,/*s/plot/slopeGradient,
28 
Soil sample,,Always empty
29 
pH acuoso (ISRIC 4–– 1 - 14),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,
30 
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,
31 
Nitrógeno total (ISRIC 6–%–0.0014),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen,
32 
"Carbón Orgánico (WSP S-9,10–%–0.06)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,
33 
"Materia Orgánica (WSP S-9,10–%–0.1)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value,
34 
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus,
35 
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,
36 
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,
37 
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,
38 
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium,
39 
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,
40 
CIC (ISRIC 11–cmolc/Kg–0.05),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,
41 
Arena (DIN 18 123–%–2.5),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value,
42 
Limo (DIN 18 123–%–1),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value,
43 
Arcilla (DIN 18 123–%–1),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value,
44 
Textural class,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,
45 
Observaciones,/*s/plot/note,
46 
Orientación/exposicion,/*s/plot/slopeAspect/_alt/2,Part files provide either this field or Orientación
inputs/Madidi/maps/VegX.organisms.csv
1 
Madidi,VegX:,Comments
2 
Expedition,,
3 
Inventory name,,
4 
Number of inventory (general),,
5 
Number of inventory (expedition),,
6 
"Type Inventory (C, PP, TP)",,
7 
Inventory code,,
8 
Tag number,,
9 
Tree number,,
10 
Number of subplot,,
11 
Index collector,,
12 
Specimen,,
13 
Similar specimen,,
14 
Plot specimen,,
15 
Expedition specimen,,
16 
Project specimen,,
17 
Field family,,
18 
Field name,,
19 
Family (revised),,
20 
Specie+autor,,
21 
Genera,,
22 
Specific epithet,,
23 
Species and morphotypes,,
24 
Autor (revised),,
25 
Determined by,,
26 
Qualifier,,
27 
Common name,,
28 
Circumference,,
29 
Diameter,,
30 
Trunk,,
31 
Total height,,
32 
Bole height,,
33 
Habit,,
34 
Phenology,,
35 
Crown position,,
36 
Crown shape,,
37 
Liana presence,,
38 
Basal area,,
39 
Subplot X,,
40 
Subplot Y,,
41 
Plot X,,
42 
Plot Y,,
43 
Observations,,
inputs/Madidi/maps/VegX.plots.full.csv
1 
Madidi,VegX:,Comments
2 
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium,
3 
Nitrógeno total (ISRIC 6–%–0.0014),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen,
4 
pH acuoso (ISRIC 4–– 1 - 14),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,
5 
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus,
6 
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,
7 
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,
8 
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,
9 
"Carbón Orgánico (WSP S-9,10–%–0.06)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,
10 
CIC (ISRIC 11–cmolc/Kg–0.05),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,
11 
Arcilla (DIN 18 123–%–1),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value,
12 
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,
13 
"Materia Orgánica (WSP S-9,10–%–0.1)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value,
14 
Arena (DIN 18 123–%–2.5),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value,
15 
Limo (DIN 18 123–%–1),/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value,
16 
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,
17 
Textural class,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,
18 
Vegetation type,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,
19 
Locality description,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,Often begins with the text in Vegetation type
20 
Expedition name,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],Consistent (globally unique) between PPM and PT data
21 
Expedition number,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=sourceAccessionCode],Consistent (globally unique) between PPM and PT data
22 
First evaluation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate,
23 
Area,/*s/plot/area,
24 
Latitude,/*s/plot/geospatial/DecimalLatitude/_alt/1,
25 
Latitude (DMS),/*s/plot/geospatial/DecimalLatitude/_alt/2,
26 
Longitude,/*s/plot/geospatial/DecimalLongitude/_alt/1,
27 
Longitude (DMS),/*s/plot/geospatial/DecimalLongitude/_alt/2,
28 
Minimum altitude,/*s/plot/geospatial/minimumElevationInMeters,
29 
Altitude,/*s/plot/geospatial/verbatimElevation,
30 
Topographical situation,/*s/plot/landform,
31 
Locality,/*s/plot/locationNarrative,
32 
Observaciones,/*s/plot/note,
33 
Inventory name,/*s/plot/plotName,
34 
Inventory code,/*s/plot/plotUniqueIdentifier,
35 
Direction,/*s/plot/slopeAspect/_alt/1,Part files provide either this field or Direction
36 
Orientación/exposicion,/*s/plot/slopeAspect/_alt/2,Part files provide either this field or Orientación
37 
Slope,/*s/plot/slopeGradient,
38 
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
39 
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
40 
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
41 
Inventory number,,Not globally unique
42 
Number of inventory (expedition),,The number of the event within the project
43 
Number of stems,,Do we want to store this data?
44 
Number of trees,,Do we want to store this data?
45 
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
46 
Soil sample,,Always empty
inputs/CVS/maps/VegX.organisms.full.csv
1 
CVS,VegX:,Comments
2 
currentTaxonName sec Weakley 2006,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name",
3 
%cover,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,
4 
obsStartDate,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_*/date,
5 
locationAccuracy-m,/*s/plot/geospatial/CoordinateUncertaintyInMeters,
6 
realLatitude,/*s/plot/geospatial/DecimalLatitude/_alt/1,
7 
publicLatitude,/*s/plot/geospatial/DecimalLatitude/_alt/2,
8 
realLongitude,/*s/plot/geospatial/DecimalLongitude/_alt/1,
9 
publicLongitude,/*s/plot/geospatial/DecimalLongitude/_alt/2,
10 
county,/*s/plot/location[placeType=county]/placeName,
11 
state,/*s/plot/location[placeType=state]/placeName,
12 
authorObsCode,/*s/plot/plotName,
13 
confidentialityStatus,,
inputs/CVS/maps/VegX.organisms.csv
1 
CVS,VegX:,Comments
2 
authorObsCode,/*s/plot/plotName,
3 
obsStartDate,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_*/date,
4 
realLatitude,/*s/plot/geospatial/DecimalLatitude/_alt/1,
5 
realLongitude,/*s/plot/geospatial/DecimalLongitude/_alt/1,
6 
locationAccuracy-m,/*s/plot/geospatial/CoordinateUncertaintyInMeters,
7 
publicLatitude,/*s/plot/geospatial/DecimalLatitude/_alt/2,
8 
publicLongitude,/*s/plot/geospatial/DecimalLongitude/_alt/2,
9 
confidentialityStatus,,
10 
state,/*s/plot/location[placeType=state]/placeName,
11 
county,/*s/plot/location[placeType=county]/placeName,
12 
currentTaxonName sec Weakley 2006,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name",
13 
%cover,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,
inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv
1 
SALVIAS-CSV,VegX:,Comments
2 
notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
3 
basal_diam,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,
4 
stem_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,
5 
stem_canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,Brad: Should also be userDefined for VegBank.
6 
stem_canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,Brad: Should also be userDefined for VegBank.
7 
ht_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
8 
stem_height_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,"Brad: Should also be userDefined for VegBank. Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
9 
stem_liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,Brad: Should also be userDefined for VegBank.
10 
no_of_individuals,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
11 
cf_aff,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
12 
orig_species,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name/_name/last",Brad: OMIT
13 
orig_family,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",Brad: OMIT
14 
det_type,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
15 
coll_firstname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",Brad: See comment above
16 
coll_lastname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName","Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
17 
infra_ep_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name",
18 
infra_rank_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank",
19 
specific_authority,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
20 
family,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",
21 
genus,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name",
22 
specific_epithet,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",
23 
coll_number,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/1,Brad: Incorrect. Map instead as for voucher_string
24 
voucher_string,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
25 
tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1]/_alt/1,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
26 
stem_tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1]/_alt/2,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
27 
tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2]/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
28 
stem_tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2]/_alt/2,Brad: see above
29 
height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
30 
x_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
31 
y_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeY,Brad: See comment above for x_position
32 
individual_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=authorPlantCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
33 
census_no,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
34 
habit,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
35 
stem_height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=height]/value,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
36 
OBSERVATION_ID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
37 
cover_percent,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,
38 
intercept_cm,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/value,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
39 
census_date,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_date/year,
40 
plot_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,"Brad: Same as plotCode, above"
41 
PLOT_ID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
42 
subplot,/*s/plot/plotName,
43 
collector_code,,Brad: OMIT
44 
comments,,Brad: OMIT
45 
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
46 
gen_status,,Brad: OMIT. This will be determined later by using TNRS.
47 
ind_id,,Brad: OMIT
48 
species_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
inputs/SALVIAS-CSV/maps/VegX.plots.csv
1 
SALVIAS-CSV,VegX:,Comments
2 
project,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],
3 
PLOT_ID,/*s/plot/plotUniqueIdentifier,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 
plot_code,/*s/plot/plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
5 
major_geo,/*s/plot/location[placeType=continent]/placeName,
6 
country,/*s/plot/location[placeType=country]/placeName,
7 
pol1,/*s/plot/location[placeType=state]/placeName,Brad: No; pol1=stateProvince
8 
pol2,/*s/plot/location[placeType=county]/placeName,Brad: No pol2=countyParish
9 
locality_description,/*s/plot/locationNarrative,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
10 
lat_decimal,/*s/plot/geospatial/DecimalLatitude,
11 
long_decimal,/*s/plot/geospatial/DecimalLongitude,
12 
elev_m,/*s/plot/geospatial/verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
13 
elev_max_m,/*s/plot/geospatial/maximumElevationInMeters,
14 
elev_min_m,/*s/plot/geospatial/minimumElevationInMeters,
15 
temp_c,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/temperature,
16 
precip_mm,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=precipitation]/value,
17 
slope_aspect,/*s/plot/slopeAspect,
18 
slope_gradient,/*s/plot/slopeGradient,
19 
clay_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value/_units:[default=""%"",to=]/value",
20 
silt_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value/_units:[default=""%"",to=]/value",
21 
sand_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value/_units:[default=""%"",to=]/value",
22 
organic_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
23 
pH,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
24 
soil_N,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen/_units:[default=""%"",to=]/value",
25 
soil_P,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
26 
soil_C,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value/_units:[default=""%"",to=]/value",
27 
soil_K,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium/_units:[default=""%"",to=]/value",
28 
soil_Mg,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium/_units:[default=""%"",to=]/value",
29 
soil_Ca,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value/_units:[default=""%"",to=]/value",
30 
soil_Na,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value/_units:[default=""%"",to=]/value",
31 
soil_acidity,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
32 
soil_base,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value/_units:[default=""%"",to=]/value",
33 
soil_cation_cap,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,
34 
soil_conductivity,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,
35 
soil_texture,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,
36 
holdridge_life_zone,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,
37 
life_zone_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,
38 
observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
39 
plot_methodology,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=method]/*ID/method/name,
40 
plot_area_ha,/*s/plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
42 
date_start,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_*/date,
43 
date_finish,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsEndDate/_*/date,
inputs/SALVIAS-CSV/maps/VegX.organisms.csv
1 
SALVIAS-CSV,VegX:,Comments
2 
OBSERVATION_ID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
3 
PLOT_ID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 
plot_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,"Brad: Same as plotCode, above"
5 
census_no,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
6 
census_date,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_date/year,
7 
subplot,/*s/plot/plotName,
8 
individual_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=authorPlantCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
9 
ind_id,,Brad: OMIT
10 
tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1]/_alt/1,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11 
tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2]/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12 
x_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
13 
y_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeY,Brad: See comment above for x_position
14 
voucher_string,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
15 
coll_number,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/1,Brad: Incorrect. Map instead as for voucher_string
16 
collector_code,,Brad: OMIT
17 
coll_lastname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName","Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
18 
coll_firstname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",Brad: See comment above
19 
det_type,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
20 
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
21 
gen_status,,Brad: OMIT. This will be determined later by using TNRS.
22 
species_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
23 
family,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",
24 
genus,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name",
25 
specific_epithet,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",
26 
specific_authority,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
27 
infra_rank_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank",
28 
infra_ep_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name",
29 
cf_aff,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
30 
comments,,Brad: OMIT
31 
habit,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
32 
no_of_individuals,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
33 
cover_percent,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,
34 
intercept_cm,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/value,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
35 
height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
36 
ht_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
37 
stem_tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1]/_alt/2,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
38 
stem_tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2]/_alt/2,Brad: see above
39 
stem_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,
40 
basal_diam,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,
41 
stem_height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=height]/value,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
42 
stem_height_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,"Brad: Should also be userDefined for VegBank. Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
43 
stem_canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,Brad: Should also be userDefined for VegBank.
44 
stem_canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,Brad: Should also be userDefined for VegBank.
45 
stem_liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,Brad: Should also be userDefined for VegBank.
46 
notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
47 
orig_family,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",Brad: OMIT
48 
orig_species,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name/_name/last",Brad: OMIT
inputs/SALVIAS-CSV/maps/VegX.plots.full.csv
1 
SALVIAS-CSV,VegX:,Comments
2 
soil_Mg,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium/_units:[default=""%"",to=]/value",
3 
soil_N,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen/_units:[default=""%"",to=]/value",
4 
pH,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
5 
soil_P,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
6 
soil_K,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium/_units:[default=""%"",to=]/value",
7 
soil_acidity,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
8 
soil_base,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value/_units:[default=""%"",to=]/value",
9 
soil_Ca,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value/_units:[default=""%"",to=]/value",
10 
soil_C,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value/_units:[default=""%"",to=]/value",
11 
soil_cation_cap,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,
12 
clay_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value/_units:[default=""%"",to=]/value",
13 
soil_conductivity,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,
14 
organic_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
15 
sand_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value/_units:[default=""%"",to=]/value",
16 
silt_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value/_units:[default=""%"",to=]/value",
17 
soil_Na,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value/_units:[default=""%"",to=]/value",
18 
soil_texture,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,
19 
holdridge_life_zone,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,
20 
life_zone_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,
21 
project,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],
22 
date_finish,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsEndDate/_*/date,
23 
date_start,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_*/date,
24 
plot_methodology,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=method]/*ID/method/name,
25 
precip_mm,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=precipitation]/value,
26 
temp_c,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/temperature,
27 
plot_area_ha,/*s/plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
28 
lat_decimal,/*s/plot/geospatial/DecimalLatitude,
29 
long_decimal,/*s/plot/geospatial/DecimalLongitude,
30 
elev_max_m,/*s/plot/geospatial/maximumElevationInMeters,
31 
elev_min_m,/*s/plot/geospatial/minimumElevationInMeters,
32 
elev_m,/*s/plot/geospatial/verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
33 
locality_description,/*s/plot/locationNarrative,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
34 
major_geo,/*s/plot/location[placeType=continent]/placeName,
35 
country,/*s/plot/location[placeType=country]/placeName,
36 
pol2,/*s/plot/location[placeType=county]/placeName,Brad: No pol2=countyParish
37 
pol1,/*s/plot/location[placeType=state]/placeName,Brad: No; pol1=stateProvince
38 
plot_code,/*s/plot/plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
39 
PLOT_ID,/*s/plot/plotUniqueIdentifier,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
40 
slope_aspect,/*s/plot/slopeAspect,
41 
slope_gradient,/*s/plot/slopeGradient,
42 
observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
43 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
inputs/SALVIAS/maps/VegX.organisms.full.csv
1 
SALVIAS,VegX:,Comments
2 
Notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
3 
temp_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,
4 
canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,Brad: Should also be userDefined for VegBank.
5 
canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,Brad: Should also be userDefined for VegBank.
6 
ht_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
7 
liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,Brad: Should also be userDefined for VegBank.
8 
NoInd,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
9 
cfaff,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
10 
OrigGenus,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name/_name/first",
11 
OrigSpecies,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name/_name/last",Brad: OMIT
12 
OrigFamily,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",Brad: OMIT
13 
DetType,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
14 
coll_firstname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",Brad: See comment above
15 
coll_lastname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName","Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
16 
infra_ep_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name",
17 
infra_rank_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank",
18 
auth,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
19 
Family,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",
20 
Genus,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name",
21 
Species,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",
22 
coll_number,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/1,Brad: Incorrect. Map instead as for voucher_string
23 
SourceVoucher,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
24 
tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
25 
tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2],"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
26 
height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
27 
x_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
28 
y_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeY,Brad: See comment above for x_position
29 
Ind,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=authorPlantCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
30 
census_no,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
31 
census_date,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value/_*/date,
32 
Habit,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
33 
PlotObsID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
34 
cover_percent,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,
35 
intercept_cm,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/value,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
36 
PlotCode,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,"Brad: Same as plotCode, above"
37 
PlotID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
38 
Line,/*s/plot/plotName,
39 
GenAuth,,
40 
IsMorpho,,
41 
OrigAuth,,
42 
OrigRecordID,,
43 
SpAuthStatus,,
44 
coll_inits,,
45 
collector_code,,Brad: OMIT
46 
common_name,,
47 
det_by,,
48 
dist,,
49 
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
50 
gen_status,,Brad: OMIT. This will be determined later by using TNRS.
51 
height_class,,
52 
height_m_commercial,,
53 
ind_id,,Brad: OMIT
54 
infra_auth_1,,
55 
morphocf,,
56 
morphoname,,
57 
name_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
58 
other_annotations,,
59 
perp_dist,,
60 
phenology,,
61 
species_code,,
62 
temp_liandbh,,
63 
tmp_del,,
inputs/SALVIAS/maps/VegX.plots.csv
1 
SALVIAS,VegX:,Comments
2 
PlotID,/*s/plot/plotUniqueIdentifier,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
3 
orig_filename,,
4 
AccessCode,,
5 
project_id,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],
6 
PrimOwnerID,,
7 
SiteCode,/*s/plot/plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
8 
SiteName,,
9 
new_world,,
10 
MajorGeo,/*s/plot/location[placeType=continent]/placeName,
11 
Country,/*s/plot/location[placeType=country]/placeName,
12 
PolDiv1,/*s/plot/location[placeType=state]/placeName,Brad: No; pol1=stateProvince
13 
pol1_type,,
14 
pol2,/*s/plot/location[placeType=county]/placeName,Brad: No pol2=countyParish
15 
pol2_type,,
16 
lat_string,,
17 
long_string,,
18 
LatDec,/*s/plot/geospatial/DecimalLatitude,
19 
LongDec,/*s/plot/geospatial/DecimalLongitude,
20 
lat_long_accuracy,,
21 
Elev,/*s/plot/geospatial/verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
22 
elev_max_m,/*s/plot/geospatial/maximumElevationInMeters,
23 
elev_min_m,/*s/plot/geospatial/minimumElevationInMeters,
24 
Precip,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=precipitation]/value,
25 
ElevSource,,
26 
Temp,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/temperature,
27 
PrecipSource,,
28 
TempSource,,
29 
bearing,,
30 
slope_aspect,/*s/plot/slopeAspect,
31 
slope_gradient,/*s/plot/slopeGradient,
32 
clay_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value/_units:[default=""%"",to=]/value",
33 
silt_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value/_units:[default=""%"",to=]/value",
34 
sand_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value/_units:[default=""%"",to=]/value",
35 
pH,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
36 
soil_N,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen/_units:[default=""%"",to=]/value",
37 
soil_P,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
38 
soil_C,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value/_units:[default=""%"",to=]/value",
39 
soil_K,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium/_units:[default=""%"",to=]/value",
40 
soil_Mg,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium/_units:[default=""%"",to=]/value",
41 
soil_Ca,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value/_units:[default=""%"",to=]/value",
42 
soil_Na,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value/_units:[default=""%"",to=]/value",
43 
soil_acidity,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
44 
soil_base,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value/_units:[default=""%"",to=]/value",
45 
soil_cation_cap,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,
46 
soil_conductivity,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,
47 
organic_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
48 
soil_texture,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value/_units:[default=""%"",to=]/value",
49 
RevisionComments,,
50 
Locality_Description,/*s/plot/locationNarrative,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
51 
topography_desc,,
52 
vegetation_1,,
53 
vegetation_2,,
54 
Habitat,,
55 
life_zone_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,
56 
life_zone,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,
57 
PlotMethod,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=method]/*ID/method/name,
58 
MethodCode,,
59 
plot_area_ha,/*s/plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
61 
date_start,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_*/date,
62 
date_finish,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsEndDate/_*/date,
63 
plot_administrator,,
64 
plot_notes,,
65 
tmp_del,,
inputs/SALVIAS/maps/VegX.stems.full.csv
1 
SALVIAS,VegX:,Comments
2 
NoInd,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,
3 
stem_notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
4 
stem_tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],
5 
stem_tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=2],
6 
basal_diam,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,
7 
stem_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,
8 
gentry_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,
9 
stem_canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,
10 
stem_canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,
11 
stem_height_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,
12 
stem_height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=height]/value,
13 
stem_liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,
14 
PlotObsID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,
15 
origrecord_id_stems,,
16 
stem_id,,
17 
tmp_del,,
inputs/SALVIAS/maps/VegX.plots.full.csv
1 
SALVIAS,VegX:,Comments
2 
soil_Mg,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/magnesium/_units:[default=""%"",to=]/value",
3 
soil_N,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/nitrogen/_units:[default=""%"",to=]/value",
4 
pH,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
5 
soil_P,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
6 
soil_K,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium/_units:[default=""%"",to=]/value",
7 
soil_acidity,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
8 
soil_base,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value/_units:[default=""%"",to=]/value",
9 
soil_Ca,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value/_units:[default=""%"",to=]/value",
10 
soil_C,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value/_units:[default=""%"",to=]/value",
11 
soil_cation_cap,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value,
12 
clay_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value/_units:[default=""%"",to=]/value",
13 
soil_conductivity,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,
14 
organic_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
15 
sand_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sand]/value/_units:[default=""%"",to=]/value",
16 
silt_percent,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=silt]/value/_units:[default=""%"",to=]/value",
17 
soil_Na,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value/_units:[default=""%"",to=]/value",
18 
soil_texture,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value/_units:[default=""%"",to=]/value",
19 
life_zone_code,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,
20 
life_zone,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,
21 
project_id,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/*ID->/*s/project/title[@id=name],
22 
date_finish,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsEndDate/_*/date,
23 
date_start,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/obsStartDate/_*/date,
24 
PlotMethod,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=method]/*ID/method/name,
25 
Precip,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=precipitation]/value,
26 
Temp,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/temperature,
27 
plot_area_ha,/*s/plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
28 
LatDec,/*s/plot/geospatial/DecimalLatitude,
29 
LongDec,/*s/plot/geospatial/DecimalLongitude,
30 
elev_max_m,/*s/plot/geospatial/maximumElevationInMeters,
31 
elev_min_m,/*s/plot/geospatial/minimumElevationInMeters,
32 
Elev,/*s/plot/geospatial/verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
33 
Locality_Description,/*s/plot/locationNarrative,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
34 
MajorGeo,/*s/plot/location[placeType=continent]/placeName,
35 
Country,/*s/plot/location[placeType=country]/placeName,
36 
pol2,/*s/plot/location[placeType=county]/placeName,Brad: No pol2=countyParish
37 
PolDiv1,/*s/plot/location[placeType=state]/placeName,Brad: No; pol1=stateProvince
38 
SiteCode,/*s/plot/plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
39 
PlotID,/*s/plot/plotUniqueIdentifier,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
40 
slope_aspect,/*s/plot/slopeAspect,
41 
slope_gradient,/*s/plot/slopeGradient,
42 
AccessCode,,
43 
ElevSource,,
44 
Habitat,,
45 
MethodCode,,
46 
PrecipSource,,
47 
PrimOwnerID,,
48 
RevisionComments,,
49 
SiteName,,
50 
TempSource,,
51 
bearing,,
52 
lat_long_accuracy,,
53 
lat_string,,
54 
long_string,,
55 
new_world,,
56 
orig_filename,,
57 
plot_administrator,,
58 
plot_notes,,
59 
pol1_type,,
60 
pol2_type,,
61 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
62 
tmp_del,,
63 
topography_desc,,
64 
vegetation_1,,
65 
vegetation_2,,
inputs/SALVIAS/maps/VegX.organisms.csv
1 
SALVIAS,VegX:,Comments
2 
PlotObsID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
3 
PlotID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 
PlotCode,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,"Brad: Same as plotCode, above"
5 
census_no,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
6 
census_date,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=collectionDate]/value/_*/date,
7 
OrigRecordID,,
8 
Line,/*s/plot/plotName,
9 
Ind,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=authorPlantCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
10 
ind_id,,Brad: OMIT
11 
tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
12 
tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/identificationLabel[@id=2],"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
13 
x_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
14 
y_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/relativePlotPosition/relativeY,Brad: See comment above for x_position
15 
dist,,
16 
perp_dist,,
17 
SourceVoucher,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
18 
coll_number,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/1,Brad: Incorrect. Map instead as for voucher_string
19 
collector_code,,Brad: OMIT
20 
coll_inits,,
21 
coll_lastname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName","Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
22 
coll_firstname,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",Brad: See comment above
23 
DetType,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
24 
det_by,,
25 
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
26 
gen_status,,Brad: OMIT. This will be determined later by using TNRS.
27 
name_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
28 
SpAuthStatus,,
29 
Family,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",
30 
Genus,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name",
31 
GenAuth,,
32 
Species,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name",
33 
auth,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=auth])/tcs:Name",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
34 
infra_rank_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Rank",
35 
infra_ep_1,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=TaxonomicRankBelowSubspeciesEnum])/tcs:Name",
36 
infra_auth_1,,
37 
common_name,,
38 
morphoname,,
39 
species_code,,
40 
Habit,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
41 
height_class,,
42 
height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
43 
height_m_commercial,,
44 
ht_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
45 
NoInd,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
46 
cover_percent,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent,
47 
intercept_cm,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/volumeCanopy/value,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
48 
cfaff,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/fit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
49 
other_annotations,,
50 
morphocf,,
51 
IsMorpho,,
52 
OrigFamily,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=fam])/tcs:Name",Brad: OMIT
53 
OrigGenus,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name/_name/first",
54 
OrigSpecies,"/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,!partyWithRole]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=binom])/tcs:Name/_name/last",Brad: OMIT
55 
OrigAuth,,
56 
phenology,,
57 
canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,Brad: Should also be userDefined for VegBank.
58 
canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,Brad: Should also be userDefined for VegBank.
59 
liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,Brad: Should also be userDefined for VegBank.
60 
Notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
61 
temp_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,
62 
temp_liandbh,,
63 
tmp_del,,
inputs/SALVIAS/maps/VegX.stems.csv
1 
SALVIAS,VegX:,Comments
2 
stem_id,,
3 
origrecord_id_stems,,
4 
PlotObsID,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]/simpleUserdefined[name=sourceAccessionCode]/value,
5 
NoInd,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,
6 
basal_diam,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,
7 
stem_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,
8 
gentry_dbh,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,
9 
stem_notes,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,
10 
stem_tag1,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],
11 
stem_tag2,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=2],
12 
stem_height_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=height]/value,
13 
stem_height_first_branch_m,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=heightFirstBranch]/value,
14 
stem_canopy_form,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyForm]/value,
15 
stem_canopy_position,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=canopyPosition]/value,
16 
stem_liana_infestation,/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/simpleUserdefined[name=lianaInfestation]/value,
17 
tmp_del,,
inputs/Madidi/maps/VegCSV.plots.csv
1 
Madidi,VegCSV[DwC],Comments
2 
Inventory number,,Not globally unique
3 
Expedition number,projectID,Consistent (globally unique) between PPM and PT data
4 
Expedition name,projectName,Consistent (globally unique) between PPM and PT data
5 
Number of inventory (expedition),,The number of the event within the project
6 
Inventory name,plotName,
7 
Inventory code,plotID,
8 
First evaluation,plotEventStartDate,
9 
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
10 
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
11 
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
12 
Area,plotArea,
13 
Number of stems,,Do we want to store this data?
14 
Number of trees,,Do we want to store this data?
15 
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
16 
Latitude,decimalLatitude/_alt/1,
17 
Longitude,decimalLongitude/_alt/1,
18 
Latitude (DMS),decimalLatitude/_alt/2,
19 
Longitude (DMS),decimalLongitude/_alt/2,
20 
Altitude,verbatimElevation,
21 
Minimum altitude,minimumElevationInMeters,
22 
Locality,locality,
23 
Locality description,communityName,Often begins with the text in Vegetation type
24 
Direction,slopeAspect/_alt/1,Part files provide either this field or Direction
25 
Vegetation type,communityID,
26 
Topographical situation,landform,
27 
Slope,slopeGradient,
28 
Soil sample,,Always empty
29 
pH acuoso (ISRIC 4–– 1 - 14),ph,
30 
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,
31 
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,
32 
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,
33 
"Materia Orgánica (WSP S-9,10–%–0.1)",organic,
34 
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,
35 
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,
36 
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,
37 
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,
38 
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,
39 
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,
40 
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,
41 
Arena (DIN 18 123–%–2.5),sand,
42 
Limo (DIN 18 123–%–1),silt,
43 
Arcilla (DIN 18 123–%–1),clay,
44 
Textural class,texture,
45 
Observaciones,plotNotes,
46 
Orientación/exposicion,slopeAspect/_alt/2,Part files provide either this field or Orientación
inputs/Madidi/maps/VegCSV.plots.full.csv
1 
Madidi,VegCSV[DwC],Comments
2 
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,
3 
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,
4 
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,
5 
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,
6 
Arcilla (DIN 18 123–%–1),clay,
7 
Vegetation type,communityID,
8 
Locality description,communityName,Often begins with the text in Vegetation type
9 
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,
10 
Latitude,decimalLatitude/_alt/1,
11 
Latitude (DMS),decimalLatitude/_alt/2,
12 
Longitude,decimalLongitude/_alt/1,
13 
Longitude (DMS),decimalLongitude/_alt/2,
14 
Topographical situation,landform,
15 
Locality,locality,
16 
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,
17 
Minimum altitude,minimumElevationInMeters,
18 
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,
19 
"Materia Orgánica (WSP S-9,10–%–0.1)",organic,
20 
pH acuoso (ISRIC 4–– 1 - 14),ph,
21 
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,
22 
Area,plotArea,
23 
First evaluation,plotEventStartDate,
24 
Inventory code,plotID,
25 
Inventory name,plotName,
26 
Observaciones,plotNotes,
27 
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,
28 
Expedition number,projectID,Consistent (globally unique) between PPM and PT data
29 
Expedition name,projectName,Consistent (globally unique) between PPM and PT data
30 
Arena (DIN 18 123–%–2.5),sand,
31 
Limo (DIN 18 123–%–1),silt,
32 
Direction,slopeAspect/_alt/1,Part files provide either this field or Direction
33 
Orientación/exposicion,slopeAspect/_alt/2,Part files provide either this field or Orientación
34 
Slope,slopeGradient,
35 
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,
36 
Textural class,texture,
37 
Altitude,verbatimElevation,
38 
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
39 
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
40 
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
41 
Inventory number,,Not globally unique
42 
Number of inventory (expedition),,The number of the event within the project
43 
Number of stems,,Do we want to store this data?
44 
Number of trees,,Do we want to store this data?
45 
Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
46 
Soil sample,,Always empty
inputs/Madidi/maps/VegCSV.organisms.csv
1 
Madidi,VegCSV[DwC],Comments
2 
Expedition,,
3 
Inventory name,,
4 
Number of inventory (general),,
5 
Number of inventory (expedition),,
6 
"Type Inventory (C, PP, TP)",,
7 
Inventory code,,
8 
Tag number,,
9 
Tree number,,
10 
Number of subplot,,
11 
Index collector,,
12 
Specimen,,
13 
Similar specimen,,
14 
Plot specimen,,
15 
Expedition specimen,,
16 
Project specimen,,
17 
Field family,,
18 
Field name,,
19 
Family (revised),,
20 
Specie+autor,,
21 
Genera,,
22 
Specific epithet,,
23 
Species and morphotypes,,
24 
Autor (revised),,
25 
Determined by,,
26 
Qualifier,,
27 
Common name,,
28 
Circumference,,
29 
Diameter,,
30 
Trunk,,
31 
Total height,,
32 
Bole height,,
33 
Habit,,
34 
Phenology,,
35 
Crown position,,
36 
Crown shape,,
37 
Liana presence,,
38 
Basal area,,
39 
Subplot X,,
40 
Subplot Y,,
41 
Plot X,,
42 
Plot Y,,
43 
Observations,,
inputs/SALVIAS/maps/VegCSV.stems.full.csv
1 
SALVIAS,VegCSV[DwC],Comments
2 
basal_diam,basalDiameter,
3 
stem_canopy_form,canopyForm,
4 
stem_canopy_position,canopyPosition,
5 
stem_dbh,diameterBreastHeight,
6 
gentry_dbh,diameterBreastHeightGentry,
7 
stem_height_m,height,
8 
stem_height_first_branch_m,heightFirstBranch,
9 
NoInd,individualCount,
10 
stem_liana_infestation,lianaInfestation,
11 
PlotObsID,occurrenceID,
12 
stem_tag2,previousTag,
13 
stem_notes,stemNotes,
14 
stem_tag1,tag,
15 
origrecord_id_stems,,
16 
stem_id,,
17 
tmp_del,,
inputs/SALVIAS/maps/VegCSV.plots.full.csv
1 
SALVIAS,VegCSV[DwC],Comments
2 
soil_acidity,"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
3 
soil_base,"baseSaturation/_units:[default=""%"",to=]/value",
4 
soil_Ca,"calcium/_units:[default=""%"",to=]/value",
5 
soil_C,"carbon/_units:[default=""%"",to=]/value",
6 
soil_cation_cap,cationExchangeCapacity,
7 
clay_percent,"clay/_units:[default=""%"",to=]/value",
8 
life_zone_code,communityID,
9 
life_zone,communityName,
10 
soil_conductivity,conductivity,
11 
MajorGeo,continent,
12 
Country,country,
13 
pol2,county,Brad: No pol2=countyParish
14 
LatDec,decimalLatitude,
15 
LongDec,decimalLongitude,
16 
Locality_Description,locality,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
17 
soil_Mg,"magnesium/_units:[default=""%"",to=]/value",
18 
elev_max_m,maximumElevationInMeters,
19 
elev_min_m,minimumElevationInMeters,
20 
soil_N,"nitrogen/_units:[default=""%"",to=]/value",
21 
organic_percent,"organic/_units:[default=""%"",to=]/value",
22 
pH,ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
23 
soil_P,"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
24 
plot_area_ha,plotArea,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
25 
date_finish,plotEventEndDate/_*/date,
26 
date_start,plotEventStartDate/_*/date,
27 
PlotID,plotID,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
28 
SiteCode,plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
29 
soil_K,"potassium/_units:[default=""%"",to=]/value",
30 
Precip,precipitation,
31 
project_id,projectName,
32 
PlotMethod,samplingProtocol,
33 
sand_percent,"sand/_units:[default=""%"",to=]/value",
34 
silt_percent,"silt/_units:[default=""%"",to=]/value",
35 
slope_aspect,slopeAspect,
36 
slope_gradient,slopeGradient,
37 
soil_Na,"sodium/_units:[default=""%"",to=]/value",
38 
PolDiv1,stateProvince,Brad: No; pol1=stateProvince
39 
Temp,temperature,
40 
soil_texture,"texture/_units:[default=""%"",to=]/value",
41 
Elev,verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
42 
AccessCode,,
43 
ElevSource,,
44 
Habitat,,
45 
MethodCode,,
46 
PrecipSource,,
47 
PrimOwnerID,,
48 
RevisionComments,,
49 
SiteName,,
50 
TempSource,,
51 
bearing,,
52 
lat_long_accuracy,,
53 
lat_string,,
54 
long_string,,
55 
new_world,,
56 
orig_filename,,
57 
plot_administrator,,
58 
plot_notes,,
59 
pol1_type,,
60 
pol2_type,,
61 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
62 
tmp_del,,
63 
topography_desc,,
64 
vegetation_1,,
65 
vegetation_2,,
inputs/Madidi/maps/VegCSV.organisms.full.csv
1 
Madidi,VegCSV[DwC],Comments
2 
Autor (revised),,
3 
Basal area,,
4 
Bole height,,
5 
Circumference,,
6 
Common name,,
7 
Crown position,,
8 
Crown shape,,
9 
Determined by,,
10 
Diameter,,
11 
Expedition,,
12 
Expedition specimen,,
13 
Family (revised),,
14 
Field family,,
15 
Field name,,
16 
Genera,,
17 
Habit,,
18 
Index collector,,
19 
Inventory code,,
20 
Inventory name,,
21 
Liana presence,,
22 
Number of inventory (expedition),,
23 
Number of inventory (general),,
24 
Number of subplot,,
25 
Observations,,
26 
Phenology,,
27 
Plot X,,
28 
Plot Y,,
29 
Plot specimen,,
30 
Project specimen,,
31 
Qualifier,,
32 
Similar specimen,,
33 
Specie+autor,,
34 
Species and morphotypes,,
35 
Specific epithet,,
36 
Specimen,,
37 
Subplot X,,
38 
Subplot Y,,
39 
Tag number,,
40 
Total height,,
41 
Tree number,,
42 
Trunk,,
43 
"Type Inventory (C, PP, TP)",,
inputs/Madidi/maps/VegBIEN.plots.csv
1 
Madidi,VegBIEN:,Comments
2 
Area,/location/area,
3 
Altitude,/location/elevation/_alt/1,
4 
Minimum altitude,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value",
5 
Minimum altitude,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value",
6 
Topographical situation,/location/landform,
7 
Latitude,/location/locationdetermination/latitude/_alt/1,
8 
Latitude (DMS),/location/locationdetermination/latitude/_alt/2,
9 
Longitude,/location/locationdetermination/longitude/_alt/1,
10 
Longitude (DMS),/location/locationdetermination/longitude/_alt/2,
11 
Expedition name,/location/locationevent/*_id/project/projectname,Consistent (globally unique) between PPM and PT data
12 
Expedition number,/location/locationevent/*_id/project/sourceaccessioncode,Consistent (globally unique) between PPM and PT data
13 
Inventory name,/location/locationevent/authorlocationcode,
14 
Vegetation type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
15 
Locality description,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,Often begins with the text in Vegetation type
16 
First evaluation,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,
17 
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/acidity,
18 
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/location/locationevent/soilobs/calcium,
19 
"Carbón Orgánico (WSP S-9,10–%–0.06)",/location/locationevent/soilobs/carbon,
20 
CIC (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/cationexchangecapacity,
21 
Arcilla (DIN 18 123–%–1),/location/locationevent/soilobs/clay,
22 
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/location/locationevent/soilobs/conductivity,
23 
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilobs/magnesium,
24 
Nitrógeno total (ISRIC 6–%–0.0014),/location/locationevent/soilobs/nitrogen,
25 
"Materia Orgánica (WSP S-9,10–%–0.1)",/location/locationevent/soilobs/organic,
26 
pH acuoso (ISRIC 4–– 1 - 14),/location/locationevent/soilobs/ph,
27 
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/location/locationevent/soilobs/phosphorus,
28 
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/location/locationevent/soilobs/potassium,
29 
Arena (DIN 18 123–%–2.5),/location/locationevent/soilobs/sand,
30 
Limo (DIN 18 123–%–1),/location/locationevent/soilobs/silt,
31 
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilobs/sodium,
32 
Textural class,/location/locationevent/soilobs/texture,
33 
Inventory code,/location/locationevent/sourceaccessioncode,
34 
Locality,/location/locationnarrative,
35 
Observaciones,/location/notespublic,
36 
Direction,/location/slopeaspect/_compass/value/_alt/1,Part files provide either this field or Direction
37 
Orientación/exposicion,/location/slopeaspect/_compass/value/_alt/2,Part files provide either this field or Orientación
38 
Slope,/location/slopegradient,
39 
Inventory code,/location/sourceaccessioncode/_merge/2/_alt/1,
40 
Inventory name,/location/sourceaccessioncode/_merge/2/_alt/2,
1 
Madidi,VegBIEN:,Comments,Source,Order within table
2 
Area,/location/area,Table added for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/area,11
3 
Altitude,/location/elevation/_alt/1,,http://rs.tdwg.org/dwc/terms/#verbatimElevation,70
4 
Minimum altitude,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value",,http://rs.tdwg.org/dwc/terms/#minimumElevationInMeters,71
5 
Minimum altitude,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value",,http://rs.tdwg.org/dwc/terms/#minimumElevationInMeters,71
6 
Topographical situation,/location/landform,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/landform,18
7 
Latitude,/location/locationdetermination/latitude/_alt/1,,http://rs.tdwg.org/dwc/terms/#decimalLatitude,85
8 
Latitude (DMS),/location/locationdetermination/latitude/_alt/2,,http://rs.tdwg.org/dwc/terms/#decimalLatitude,85
9 
Longitude,/location/locationdetermination/longitude/_alt/1,,http://rs.tdwg.org/dwc/terms/#decimalLongitude,86
10 
Longitude (DMS),/location/locationdetermination/longitude/_alt/2,,http://rs.tdwg.org/dwc/terms/#decimalLongitude,86
11 
Expedition name,/location/locationevent/*_id/project/projectname,Consistent (globally unique) between PPM and PT data,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/projects/project, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName",", 1"
12 
Expedition number,/location/locationevent/*_id/project/sourceaccessioncode,Consistent (globally unique) between PPM and PT data,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/projects/project, http://rs.tdwg.org/dwc/terms/#occurrenceID",", 0"
13 
Inventory name,/location/locationevent/authorlocationcode,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName,1
14 
Vegetation type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,Table shortened for standardization,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/communityDeterminations/communityDetermination/communityConcepts/communityConcept, http://rs.tdwg.org/dwc/terms/#occurrenceID",", 0"
15 
Locality description,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,Often begins with the text in Vegetation type; Table shortened for standardization,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/communityDeterminations/communityDetermination/communityConcepts/communityConcept/name,0
16 
First evaluation,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,Table added for uniqueness,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot, http://rs.tdwg.org/dwc/terms/#eventDate, http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#obsStartDate",", 44, 5"
17 
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/acidity,,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=plotMetadata&target=tbl_structure.php#soil_acidity,42
18 
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/location/locationevent/soilobs/calcium,Expanded for clarity,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=plotMetadata&target=tbl_structure.php#soil_Ca,40
19 
"Carbón Orgánico (WSP S-9,10–%–0.06)",/location/locationevent/soilobs/carbon,Expanded for clarity,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=plotMetadata&target=tbl_structure.php#soil_C,37
20 
CIC (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilobs/cationexchangecapacity,Expanded for clarity,"http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilObs&entity=dba_tabledescription&where=where_tablename#exchangeCapacity, http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=plotMetadata&target=tbl_structure.php#soil_cation_cap","13, 44"
21 
Arcilla (DIN 18 123–%–1),/location/locationevent/soilobs/clay,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilObs&entity=dba_tabledescription&where=where_tablename#soilClay,10
22 
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/location/locationevent/soilobs/conductivity,,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=plotMetadata&target=tbl_structure.php#soil_conductivity,45
23 
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilobs/magnesium,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation/magnesium,4
24 
Nitrógeno total (ISRIC 6–%–0.0014),/location/locationevent/soilobs/nitrogen,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation/nitrogen,5
25 
"Materia Orgánica (WSP S-9,10–%–0.1)",/location/locationevent/soilobs/organic,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilObs&entity=dba_tabledescription&where=where_tablename#soilOrganic,6
26 
pH acuoso (ISRIC 4–– 1 - 14),/location/locationevent/soilobs/ph,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation/ph,6
27 
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/location/locationevent/soilobs/phosphorus,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation/phosphorus,2
28 
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/location/locationevent/soilobs/potassium,Spelling corrected,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/abioticObservations/abioticObservation/pottasium,3
29 
Arena (DIN 18 123–%–2.5),/location/locationevent/soilobs/sand,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilObs&entity=dba_tabledescription&where=where_tablename#soilSand,8
30 
Limo (DIN 18 123–%–1),/location/locationevent/soilobs/silt,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilObs&entity=dba_tabledescription&where=where_tablename#soilSilt,9
31 
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilobs/sodium,Expanded for clarity,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=plotMetadata&target=tbl_structure.php#soil_Na,41
32 
Textural class,/location/locationevent/soilobs/texture,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilObs&entity=dba_tabledescription&where=where_tablename#soilTexture,7
33 
Inventory code,/location/locationevent/sourceaccessioncode,,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot, http://rs.tdwg.org/dwc/terms/#occurrenceID",", 0"
34 
Locality,/location/locationnarrative,,http://rs.tdwg.org/dwc/terms/#locality,68
35 
Observaciones,/location/notespublic,Table added for uniqueness,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/note, http://rs.tdwg.org/dwc/terms/#fieldNotes","4, 54"
36 
Direction,/location/slopeaspect/_compass/value/_alt/1,Part files provide either this field or Direction,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/slopeAspect,15
37 
Orientación/exposicion,/location/slopeaspect/_compass/value/_alt/2,Part files provide either this field or Orientación,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/slopeAspect,15
38 
Slope,/location/slopegradient,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/slopeGradient,16
39 
Inventory code,/location/sourceaccessioncode/_merge/2/_alt/1,,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot, http://rs.tdwg.org/dwc/terms/#occurrenceID",", 0"
40 
Inventory name,/location/sourceaccessioncode/_merge/2/_alt/2,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName,1
41 41 
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
42 42 
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
43 43 
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
inputs/Madidi/maps/VegBIEN.organisms.csv
1 
Madidi,VegBIEN:,Comments
1 
Madidi,VegBIEN:,Comments,Source,Order within table
2 2 
Autor (revised),,** No input mapping for Autor (revised) **
3 3 
Basal area,,** No input mapping for Basal area **
4 4 
Bole height,,** No input mapping for Bole height **
inputs/CVS/maps/VegCSV.organisms.csv
1 
CVS,VegCSV[DwC],Comments
2 
authorObsCode,plotName,
3 
obsStartDate,plotEventStartDate/_*/date,
4 
realLatitude,decimalLatitude/_alt/1,
5 
realLongitude,decimalLongitude/_alt/1,
6 
locationAccuracy-m,coordinateUncertaintyInMeters,
7 
publicLatitude,decimalLatitude/_alt/2,
8 
publicLongitude,decimalLongitude/_alt/2,
9 
confidentialityStatus,,
10 
state,stateProvince,
11 
county,county,
12 
currentTaxonName sec Weakley 2006,scientificName,
13 
%cover,coverPercent,
inputs/CVS/maps/VegCSV.organisms.full.csv
1 
CVS,VegCSV[DwC],Comments
2 
locationAccuracy-m,coordinateUncertaintyInMeters,
3 
county,county,
4 
%cover,coverPercent,
5 
realLatitude,decimalLatitude/_alt/1,
6 
publicLatitude,decimalLatitude/_alt/2,
7 
realLongitude,decimalLongitude/_alt/1,
8 
publicLongitude,decimalLongitude/_alt/2,
9 
obsStartDate,plotEventStartDate/_*/date,
10 
authorObsCode,plotName,
11 
currentTaxonName sec Weakley 2006,scientificName,
12 
state,stateProvince,
13 
confidentialityStatus,,
inputs/CVS/maps/VegBIEN.organisms.csv
1 
CVS,VegBIEN:,Comments
2 
locationAccuracy-m,/location/locationdetermination/coordsaccuracy,
3 
realLatitude,/location/locationdetermination/latitude/_alt/1,
4 
publicLatitude,/location/locationdetermination/latitude/_alt/2,
5 
realLongitude,/location/locationdetermination/longitude/_alt/1,
6 
publicLongitude,/location/locationdetermination/longitude/_alt/2,
7 
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
8 
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
9 
authorObsCode,/location/locationevent/authorlocationcode,
10 
obsStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_*/date,
11 
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
12 
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,
13 
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first",
14 
authorObsCode,/location/sourceaccessioncode/_merge/2/_alt/2,
1 
CVS,VegBIEN:,Comments,Source,Order within table
2 
locationAccuracy-m,/location/locationdetermination/coordsaccuracy,,http://rs.tdwg.org/dwc/terms/#coordinateUncertaintyInMeters,88
3 
realLatitude,/location/locationdetermination/latitude/_alt/1,,http://rs.tdwg.org/dwc/terms/#decimalLatitude,85
4 
publicLatitude,/location/locationdetermination/latitude/_alt/2,,http://rs.tdwg.org/dwc/terms/#decimalLatitude,85
5 
realLongitude,/location/locationdetermination/longitude/_alt/1,,http://rs.tdwg.org/dwc/terms/#decimalLongitude,86
6 
publicLongitude,/location/locationdetermination/longitude/_alt/2,,http://rs.tdwg.org/dwc/terms/#decimalLongitude,86
7 
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,http://rs.tdwg.org/dwc/terms/#county,66
8 
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,http://rs.tdwg.org/dwc/terms/#stateProvince,65
9 
authorObsCode,/location/locationevent/authorlocationcode,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName,1
10 
obsStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_*/date,Table added for uniqueness,"http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot, http://rs.tdwg.org/dwc/terms/#eventDate, http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#obsStartDate",", 44, 5"
11 
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/attributes/attribute/ordinal/coverPercent,0
12 
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,,http://rs.tdwg.org/dwc/terms/#scientificName,134
13 
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first",,http://rs.tdwg.org/dwc/terms/#scientificName,134
14 
authorObsCode,/location/sourceaccessioncode/_merge/2/_alt/2,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName,1
15 15 
confidentialityStatus,,** No input mapping for confidentialityStatus **
inputs/SALVIAS-CSV/test/import.organisms.xml.ref
80 80 
                            </_alt>
81 81 
                        </overallheight>
82 82 
                        <sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode>
83 
                        <stemcount>$no_of_individuals</stemcount>
83 84 
                        <stemobservation>
84 85 
                            <basaldiameter>$basal_diam</basaldiameter>
85 86 
                            <definedvalue fkey="tablerecord_id">
......
119 120 
                                <definedvalue>$notes</definedvalue>
120 121 
                            </definedvalue>
121 122 
                            <diameterbreastheight>$stem_dbh</diameterbreastheight>
123 
                            <height>
124 
                                <_alt>
125 
                                    <0>$height_m</0>
126 
                                    <1>$stem_height_m</1>
127 
                                </_alt>
128 
                            </height>
122 129 
                            <heightfirstbranch>
123 130 
                                <_alt>
124 131 
                                    <0>$ht_first_branch_m</0>
inputs/SALVIAS/maps/VegCSV.organisms.full.csv
1 
SALVIAS,VegCSV[DwC],Comments
2 
canopy_form,canopyForm,Brad: Should also be userDefined for VegBank.
3 
canopy_position,canopyPosition,Brad: Should also be userDefined for VegBank.
4 
coll_number,catalogNumber/_alt/1,Brad: Incorrect. Map instead as for voucher_string
5 
SourceVoucher,catalogNumber/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
6 
census_no,censusNumber,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
7 
Family,computer.family,
8 
Genus,computer.genus,
9 
infra_ep_1,computer.infraspecificEpithet,
10 
auth,computer.scientificNameAuthorship,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
11 
Species,computer.specificEpithet,
12 
infra_rank_1,computer.taxonRank,
13 
cover_percent,coverPercent,
14 
temp_dbh,diameterBreastHeight,
15 
census_date,eventDate/_*/date,
16 
OrigFamily,family,Brad: OMIT
17 
Notes,fieldNotes,
18 
Ind,fieldNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
19 
Habit,"growthForm/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
20 
height_m,height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
21 
ht_first_branch_m,heightFirstBranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
22 
cfaff,identificationQualifier,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
23 
NoInd,individualCount,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
24 
liana_infestation,lianaInfestation,Brad: Should also be userDefined for VegBank.
25 
PlotObsID,occurrenceID,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
26 
PlotID,parentPlotID,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
27 
PlotCode,parentPlotName,"Brad: Same as plotCode, above"
28 
Line,plotName,
29 
tag2,previousTag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
30 
coll_firstname,recordedBy.givenName,Brad: See comment above
31 
coll_lastname,recordedBy.surName,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
32 
x_position,relativePlotX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
33 
y_position,relativePlotY,Brad: See comment above for x_position
34 
OrigGenus,scientificName/_name/first,
35 
OrigSpecies,scientificName/_name/last,Brad: OMIT
36 
tag1,tag,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
37 
intercept_cm,volumeCanopy,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
38 
DetType,voucherType,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
39 
GenAuth,,
40 
IsMorpho,,
41 
OrigAuth,,
42 
OrigRecordID,,
43 
SpAuthStatus,,
44 
coll_inits,,
45 
collector_code,,Brad: OMIT
46 
common_name,,
47 
det_by,,
48 
dist,,
49 
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
50 
gen_status,,Brad: OMIT. This will be determined later by using TNRS.
51 
height_class,,
52 
height_m_commercial,,
53 
ind_id,,Brad: OMIT
54 
infra_auth_1,,
55 
morphocf,,
56 
morphoname,,
57 
name_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
58 
other_annotations,,
59 
perp_dist,,
60 
phenology,,
61 
species_code,,
62 
temp_liandbh,,
63 
tmp_del,,
inputs/SALVIAS/maps/VegBIEN.organisms.csv
1 
SALVIAS,VegBIEN:,Comments
2 
Line,/location/locationevent/authorlocationcode,
3 
PlotID,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 
PlotCode,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,"Brad: Same as plotCode, above"
5 
PlotCode,/location/locationevent/parent_id/locationevent/authorlocationcode,"Brad: Same as plotCode, above"
6 
PlotID,/location/locationevent/parent_id/locationevent/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
7 
DetType,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/cond/_eq:[right=direct]/left,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
8 
coll_number,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string
9 
SourceVoucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
10 
coll_number,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string
11 
SourceVoucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
12 
census_date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_*/date,
13 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
14 
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
15 
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
16 
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
17 
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
18 
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s"
19 
height_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
20 
PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s"
21 
canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
22 
canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
23 
liana_infestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
24 
temp_dbh,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,
25 
ht_first_branch_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
26 
tag1,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
27 
tag2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
28 
x_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
29 
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position
30 
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
31 
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s"
32 
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s"
33 
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/first,
34 
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT
35 
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
36 
auth,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
37 
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
38 
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
39 
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
40 
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
41 
cfaff,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
42 
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
43 
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first/_name/first",
44 
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first/_name/last",Brad: OMIT
45 
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT
46 
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,Brad: See comment above
47 
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
48 
PlotID,/location/sourceaccessioncode/_merge/1/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
49 
PlotCode,/location/sourceaccessioncode/_merge/1/_alt/2,"Brad: Same as plotCode, above"
50 
Line,/location/sourceaccessioncode/_merge/2/_alt/2,
1 
SALVIAS,VegBIEN:,Comments,Source,Order within table
2 
Line,/location/locationevent/authorlocationcode,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName,1
3 
PlotID,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above.","http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename#PARENT_ID, http://rs.tdwg.org/dwc/terms/#occurrenceID","3, 0"
4 
PlotCode,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,"Brad: Same as plotCode, above","http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename#PARENT_ID, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName","3, 1"
5 
PlotCode,/location/locationevent/parent_id/locationevent/authorlocationcode,"Brad: Same as plotCode, above","http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename#PARENT_ID, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName","3, 1"
6 
PlotID,/location/locationevent/parent_id/locationevent/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above.","http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename#PARENT_ID, http://rs.tdwg.org/dwc/terms/#occurrenceID","3, 0"
7 
DetType,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/cond/_eq:[right=direct]/left,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen.; values: direct, indirect",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.det_type,17
8 
coll_number,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string,http://rs.tdwg.org/dwc/terms/#catalogNumber,20
9 
SourceVoucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/else/voucher/*_id/specimenreplicate/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below.",http://rs.tdwg.org/dwc/terms/#catalogNumber,20
10 
coll_number,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string,http://rs.tdwg.org/dwc/terms/#catalogNumber,20
11 
SourceVoucher,/location/locationevent/taxonoccurrence/_if:[name=specimenreplicate_via]/then/aggregateoccurrence:[@merge=1]/plantobservation:[@merge=1]/specimenreplicate/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below.",http://rs.tdwg.org/dwc/terms/#catalogNumber,20
12 
census_date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_*/date,,http://rs.tdwg.org/dwc/terms/#eventDate,44
13 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this.",http://rs.tdwg.org/dwc/terms/#individualCount,25
14 
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/attributes/attribute/ordinal/coverPercent,0
15 
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not.; Expanded for clarity",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.census_no,3
16 
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance.",http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/volumeCanopy,3
17 
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
18 
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s",http://rs.tdwg.org/dwc/terms/#fieldNumber,53
19 
height_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/height,4
20 
PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s",http://rs.tdwg.org/dwc/terms/#occurrenceID,19
21 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this.",http://rs.tdwg.org/dwc/terms/#individualCount,25
22 
canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank. ,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.stem_canopy_form,40
23 
canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank. ,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.stem_canopy_position,41
24 
liana_infestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank. ,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.stem_liana_infestation,42
25 
temp_dbh,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,Expanded for clarity,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.stem_dbh,36
26 
height_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/height,4
27 
ht_first_branch_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.ht_first_branch_m,33
28 
tag1,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Number removed for clarity; Quotes sort it before tag2",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.tag2,9
29 
tag2,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other.; Number replaced with named prefix for clarity",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.tag1,8
30 
x_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX.; Table added for clarity",http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/relativePlotPosition/relativeX,801
31 
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position; Table added for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/relativePlotPosition/relativeY,802
32 
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.",http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#growthform1Type,62
33 
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s",http://rs.tdwg.org/dwc/terms/#occurrenceID,19
34 
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.; ""{"" sorts it with other _if:[name=specimenreplicate_via]s",http://rs.tdwg.org/dwc/terms/#fieldNumber,53
35 
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/first,,http://rs.tdwg.org/dwc/terms/#scientificName,134
36 
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#scientificName,134
37 
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#taxonRank","2, 151"
38 
auth,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship","2, 153"
39 
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#infraspecificEpithet","2, 150"
40 
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#specificEpithet","2, 149"
41 
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#genus","2, 147"
42 
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#family","2, 146"
43 
cfaff,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank.",http://rs.tdwg.org/dwc/terms/#identificationQualifier,124
44 
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank.",http://rs.tdwg.org/dwc/terms/#identificationQualifier,124
45 
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first/_name/first",,http://rs.tdwg.org/dwc/terms/#scientificName,134
46 
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first/_name/last",Brad: OMIT,http://rs.tdwg.org/dwc/terms/#scientificName,134
47 
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT,http://rs.tdwg.org/dwc/terms/#family,146
48 
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,Brad: See comment above,"http://rs.tdwg.org/dwc/terms/#recordedBy, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/parties/party/individualName/givenName","23, 01"
49 
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick.","http://rs.tdwg.org/dwc/terms/#recordedBy, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/parties/party/individualName/surName","23, 02"
50 
PlotID,/location/sourceaccessioncode/_merge/1/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above.","http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename#PARENT_ID, http://rs.tdwg.org/dwc/terms/#occurrenceID","3, 0"
51 
PlotCode,/location/sourceaccessioncode/_merge/1/_alt/2,"Brad: Same as plotCode, above","http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename#PARENT_ID, http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName","3, 1"
52 
Line,/location/sourceaccessioncode/_merge/2/_alt/2,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/plots/plot/plotName,1
51 53 
GenAuth,,** No input mapping for GenAuth **
52 54 
IsMorpho,,** No input mapping for IsMorpho **
53 55 
OrigAuth,,** No input mapping for OrigAuth **
inputs/SALVIAS-CSV/maps/VegCSV.plots.csv
1 
SALVIAS-CSV,VegCSV[DwC],Comments
2 
project,projectName,
3 
PLOT_ID,plotID,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 
plot_code,plotName,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
5 
major_geo,continent,
6 
country,country,
7 
pol1,stateProvince,Brad: No; pol1=stateProvince
8 
pol2,county,Brad: No pol2=countyParish
9 
locality_description,locality,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
10 
lat_decimal,decimalLatitude,
11 
long_decimal,decimalLongitude,
12 
elev_m,verbatimElevation,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
13 
elev_max_m,maximumElevationInMeters,
14 
elev_min_m,minimumElevationInMeters,
15 
temp_c,temperature,
16 
precip_mm,precipitation,
17 
slope_aspect,slopeAspect,
18 
slope_gradient,slopeGradient,
19 
clay_percent,"clay/_units:[default=""%"",to=]/value",
20 
silt_percent,"silt/_units:[default=""%"",to=]/value",
21 
sand_percent,"sand/_units:[default=""%"",to=]/value",
22 
organic_percent,"organic/_units:[default=""%"",to=]/value",
23 
pH,ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
24 
soil_N,"nitrogen/_units:[default=""%"",to=]/value",
25 
soil_P,"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
26 
soil_C,"carbon/_units:[default=""%"",to=]/value",
27 
soil_K,"potassium/_units:[default=""%"",to=]/value",
28 
soil_Mg,"magnesium/_units:[default=""%"",to=]/value",
29 
soil_Ca,"calcium/_units:[default=""%"",to=]/value",
30 
soil_Na,"sodium/_units:[default=""%"",to=]/value",
31 
soil_acidity,"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
32 
soil_base,"baseSaturation/_units:[default=""%"",to=]/value",
33 
soil_cation_cap,cationExchangeCapacity,
34 
soil_conductivity,conductivity,
35 
soil_texture,texture,
36 
holdridge_life_zone,communityID,
37 
life_zone_code,communityName,
38 
observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
39 
plot_methodology,samplingProtocol,
40 
plot_area_ha,plotArea,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
42 
date_start,plotEventStartDate/_*/date,
43 
date_finish,plotEventEndDate/_*/date,
inputs/SALVIAS-CSV/maps/VegCSV.plots.full.csv
1 
SALVIAS-CSV,VegCSV[DwC],Comments
2 
soil_acidity,"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
3 
soil_base,"baseSaturation/_units:[default=""%"",to=]/value",
4 
soil_Ca,"calcium/_units:[default=""%"",to=]/value",
5 
soil_C,"carbon/_units:[default=""%"",to=]/value",
6 
soil_cation_cap,cationExchangeCapacity,
7 
clay_percent,"clay/_units:[default=""%"",to=]/value",
8 
holdridge_life_zone,communityID,
9 
life_zone_code,communityName,
10 
soil_conductivity,conductivity,
11 
major_geo,continent,
12 
country,country,
13 
pol2,county,Brad: No pol2=countyParish
14 
lat_decimal,decimalLatitude,
15 
long_decimal,decimalLongitude,
16 
locality_description,locality,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
17 
soil_Mg,"magnesium/_units:[default=""%"",to=]/value",
18 
elev_max_m,maximumElevationInMeters,
19 
elev_min_m,minimumElevationInMeters,
... This diff was truncated because it exceeds the maximum size that can be displayed.

Also available in: Unified diff