Revision 3949
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/test/import.specimens.xml.ref | ||
|---|---|---|
| 42 | 42 |
</specimenreplicate> |
| 43 | 43 |
</plantobservation> |
| 44 | 44 |
</aggregateoccurrence> |
| 45 |
<growthform> |
|
| 46 |
<_map> |
|
| 47 |
<tree>*</tree> |
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| 48 |
<shrub>*</shrub> |
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| 49 |
<liana>*</liana> |
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| 50 |
<vine>*</vine> |
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| 51 |
<herb>*</herb> |
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| 52 |
<hemiepiphyte>*</hemiepiphyte> |
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| 53 |
<epiphyte>*</epiphyte> |
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| 54 |
<grass>*</grass> |
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| 55 |
<forb>*</forb> |
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| 56 |
<moss>*</moss> |
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| 57 |
<lichen>*</lichen> |
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| 58 |
<fungus>*</fungus> |
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| 59 |
<floating aquatic>*</floating aquatic> |
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| 60 |
<submerged aquatic>*</submerged aquatic> |
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| 61 |
<*></*> |
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| 62 |
<value>$establishmentMeans</value> |
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| 63 |
</_map> |
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| 64 |
</growthform> |
|
| 65 | 45 |
<iscultivated> |
| 66 | 46 |
<_map> |
| 67 | 47 |
<cultivated>t</cultivated> |
| inputs/MT/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 4 | 4 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/#collectionID,9 |
| 5 | 5 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11 |
| 6 | 6 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,"ACAD#id, MT#id, QMOR#id, U#ID; http://rs.tdwg.org/dwc/terms/#occurrenceID",19 |
| 7 |
establishmentMeans,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
|
|
| 8 | 7 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 9 | 8 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 10 | 9 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147 |
| inputs/UNCC/test/import.specimens.xml.ref | ||
|---|---|---|
| 101 | 101 |
</specimenreplicate> |
| 102 | 102 |
</plantobservation> |
| 103 | 103 |
</aggregateoccurrence> |
| 104 |
<growthform> |
|
| 105 |
<_map> |
|
| 106 |
<tree>*</tree> |
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| 107 |
<shrub>*</shrub> |
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| 108 |
<liana>*</liana> |
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| 109 |
<vine>*</vine> |
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| 110 |
<herb>*</herb> |
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| 111 |
<hemiepiphyte>*</hemiepiphyte> |
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| 112 |
<epiphyte>*</epiphyte> |
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| 113 |
<grass>*</grass> |
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| 114 |
<forb>*</forb> |
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| 115 |
<moss>*</moss> |
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| 116 |
<lichen>*</lichen> |
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| 117 |
<fungus>*</fungus> |
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| 118 |
<floating aquatic>*</floating aquatic> |
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| 119 |
<submerged aquatic>*</submerged aquatic> |
|
| 120 |
<*></*> |
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| 121 |
<value> |
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| 122 |
<_map> |
|
| 123 |
<Y>cultivated</Y> |
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| 124 |
<N>wild</N> |
|
| 125 |
<*></*> |
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| 126 |
<value>$cultivated</value> |
|
| 127 |
</_map> |
|
| 128 |
</value> |
|
| 129 |
</_map> |
|
| 130 |
</growthform> |
|
| 131 | 104 |
<iscultivated> |
| 132 | 105 |
<_map> |
| 133 | 106 |
<cultivated>t</cultivated> |
| inputs/UNCC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 15 | 15 |
herbarium,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12 |
| 16 | 16 |
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/CollectorNumber; http://rs.tdwg.org/dwc/terms/#recordNumber,7; 22 |
| 17 | 17 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
| 18 |
cultivated,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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| 19 | 18 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 20 | 19 |
cultivated,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 21 | 20 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
| inputs/NCU-NCSC/test/import.specimens.xml.ref | ||
|---|---|---|
| 72 | 72 |
</specimenreplicate> |
| 73 | 73 |
</plantobservation> |
| 74 | 74 |
</aggregateoccurrence> |
| 75 |
<growthform> |
|
| 76 |
<_map> |
|
| 77 |
<tree>*</tree> |
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| 78 |
<shrub>*</shrub> |
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| 79 |
<liana>*</liana> |
|
| 80 |
<vine>*</vine> |
|
| 81 |
<herb>*</herb> |
|
| 82 |
<hemiepiphyte>*</hemiepiphyte> |
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| 83 |
<epiphyte>*</epiphyte> |
|
| 84 |
<grass>*</grass> |
|
| 85 |
<forb>*</forb> |
|
| 86 |
<moss>*</moss> |
|
| 87 |
<lichen>*</lichen> |
|
| 88 |
<fungus>*</fungus> |
|
| 89 |
<floating aquatic>*</floating aquatic> |
|
| 90 |
<submerged aquatic>*</submerged aquatic> |
|
| 91 |
<*></*> |
|
| 92 |
<value> |
|
| 93 |
<_map> |
|
| 94 |
<Yes>cultivated</Yes> |
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| 95 |
<No>wild</No> |
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| 96 |
<value>$Cultivated?</value> |
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| 97 |
</_map> |
|
| 98 |
</value> |
|
| 99 |
</_map> |
|
| 100 |
</growthform> |
|
| 101 | 75 |
<iscultivated> |
| 102 | 76 |
<_map> |
| 103 | 77 |
<cultivated>t</cultivated> |
| inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 9 | 9 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
| 10 | 10 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12 |
| 11 | 11 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
| 12 |
Cultivated?,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Yes=cultivated,No=wild]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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| 13 | 12 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 14 | 13 |
Cultivated?,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 15 | 14 |
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 25 | 25 |
fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/3,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53 |
| 26 | 26 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11 |
| 27 | 27 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
| 28 |
establishmentMeans,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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| 29 | 28 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 30 | 29 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 31 | 30 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,http://rs.tdwg.org/dwc/terms/#dateIdentified,120 |
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 25 | 25 |
fieldNumber,//specimenreplicate/collectionnumber,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53 |
| 26 | 26 |
institutionCode,//party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11 |
| 27 | 27 |
occurrenceID,//specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
| 28 |
establishmentMeans,//taxonoccurrence/growthform,,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
|
| 29 | 28 |
establishmentMeans,//taxonoccurrence/iscultivated,,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 30 | 29 |
establishmentMeans,//taxonoccurrence/isnative,,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 31 | 30 |
dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date,,http://rs.tdwg.org/dwc/terms/#dateIdentified,120 |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 89 | 89 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/tdwg_dw_core.xsd#/GlobalUniqueIdentifier; http://rs.tdwg.org/dwc/terms/#occurrenceID,0; 19 |
| 90 | 90 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,"ACAD#id, MT#id, QMOR#id, U#ID; http://rs.tdwg.org/dwc/terms/#occurrenceID",19 |
| 91 | 91 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
| 92 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
|
|
| 93 |
establishmentMeans,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
|
|
| 94 | 92 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 95 | 93 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 96 | 94 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 44 | 44 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/tdwg_dw_core.xsd#/GlobalUniqueIdentifier; http://rs.tdwg.org/dwc/terms/#occurrenceID,0; 19 |
| 45 | 45 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,"ACAD#id, MT#id, QMOR#id, U#ID; http://rs.tdwg.org/dwc/terms/#occurrenceID",19 |
| 46 | 46 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
| 47 |
establishmentMeans,"/location/locationevent/taxonoccurrence/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
|
|
| 48 | 47 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 49 | 48 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30 |
| 50 | 49 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,http://rs.tdwg.org/dwc/terms/#dateIdentified,120 |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: establishmentMeans: Removed obsolete mapping to growthform, since growthforms and cultivated/native information are no longer merged into one field in VegBIEN (which they were when this mapping was created)