Revision 3952
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/SALVIAS-CSV/maps/VegCSV.organisms.csv | ||
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5 | 5 |
census_no,censusNumber,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
6 | 6 |
census_date,plotEventStartDate/_date/year, |
7 | 7 |
subplot,plotName, |
8 |
individual_code,fieldNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
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|
8 |
individual_code,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
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|
9 | 9 |
ind_id,,Brad: OMIT |
10 | 10 |
tag1,tag/_alt/1,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
11 | 11 |
tag2,previousTag/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
inputs/SALVIAS-CSV/maps/VegCSV.organisms.full.csv | ||
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14 | 14 |
cover_percent,coverPercent, |
15 | 15 |
stem_dbh,diameterBreastHeight, |
16 | 16 |
orig_family,family,Brad: OMIT |
17 |
individual_code,fieldNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
18 | 17 |
habit,"growthForm/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
19 | 18 |
height_m,height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
20 | 19 |
stem_height_m,height,"Brad: Same as for height, but applies to individuals stems, not trees. Rare." |
... | ... | |
30 | 29 |
subplot,plotName, |
31 | 30 |
tag2,previousTag/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
32 | 31 |
stem_tag2,previousTag/_alt/2,Brad: see above |
32 |
individual_code,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
33 | 33 |
coll_firstname,recordedBy.givenName,Brad: See comment above |
34 | 34 |
coll_lastname,recordedBy.surName,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
35 | 35 |
x_position,relativePlotX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
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9 | 9 |
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/attributes/attribute/ordinal/coverPercent,0 |
10 | 10 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not.; Expanded for clarity",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.census_no,3 |
11 | 11 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance.",http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/volumeCanopy,3 |
12 |
individual_code,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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12 |
individual_code,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#recordNumber,22
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13 | 13 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.",http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
14 | 14 |
det_type,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen.; values: direct, indirect",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.det_type,17 |
15 | 15 |
coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
... | ... | |
33 | 33 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position; Table added for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/relativePlotPosition/relativeY,802 |
34 | 34 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.",http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#growthform1Type,62 |
35 | 35 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.",http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
36 |
individual_code,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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36 |
individual_code,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#recordNumber,22
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37 | 37 |
orig_species,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
38 | 38 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#taxonRank","2, 151" |
39 | 39 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship","2, 153" |
inputs/SALVIAS/maps/VegCSV.organisms.csv | ||
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6 | 6 |
census_date,eventDate/_*/date, |
7 | 7 |
OrigRecordID,, |
8 | 8 |
Line,plotName, |
9 |
Ind,fieldNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
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9 |
Ind,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
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10 | 10 |
ind_id,,Brad: OMIT |
11 | 11 |
tag1,tag,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
12 | 12 |
tag2,previousTag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
inputs/SALVIAS/maps/VegCSV.organisms.full.csv | ||
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15 | 15 |
census_date,eventDate/_*/date, |
16 | 16 |
OrigFamily,family,Brad: OMIT |
17 | 17 |
Notes,fieldNotes, |
18 |
Ind,fieldNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
19 | 18 |
Habit,"growthForm/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
20 | 19 |
height_m,height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
21 | 20 |
ht_first_branch_m,heightFirstBranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
... | ... | |
27 | 26 |
PlotCode,parentPlotName,"Brad: Same as plotCode, above" |
28 | 27 |
Line,plotName, |
29 | 28 |
tag2,previousTag,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
29 |
Ind,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
30 | 30 |
coll_firstname,recordedBy.givenName,Brad: See comment above |
31 | 31 |
coll_lastname,recordedBy.surName,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
32 | 32 |
x_position,relativePlotX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
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10 | 10 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not.; Expanded for clarity",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.census_no,3 |
11 | 11 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance.",http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/volumeCanopy,3 |
12 | 12 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
13 |
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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13 |
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#recordNumber,22
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14 | 14 |
PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.",http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
15 | 15 |
DetType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen.; values: direct, indirect",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.det_type,17 |
16 | 16 |
coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
... | ... | |
28 | 28 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position; Table added for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/relativePlotPosition/relativeY,802 |
29 | 29 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.",http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#growthform1Type,62 |
30 | 30 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.",http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
31 |
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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31 |
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot.",http://rs.tdwg.org/dwc/terms/#recordNumber,22
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32 | 32 |
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/first,,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
33 | 33 |
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
34 | 34 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#taxonRank","2, 151" |
mappings/VegCSV.self.plots.csv | ||
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32 | 32 |
eventDate,eventDate |
33 | 33 |
family,family |
34 | 34 |
fieldNotes,fieldNotes |
35 |
fieldNumber,fieldNumber |
|
36 | 35 |
footprintWKT,footprintWKT |
37 | 36 |
genus,genus |
38 | 37 |
growthForm,growthForm |
... | ... | |
70 | 69 |
previousTag,previousTag |
71 | 70 |
projectID,projectID |
72 | 71 |
projectName,projectName |
72 |
recordNumber,recordNumber |
|
73 | 73 |
recordedBy.givenName,recordedBy.givenName |
74 | 74 |
recordedBy.surName,recordedBy.surName |
75 | 75 |
relativePlotX,relativePlotX |
mappings/VegCSV.self.organisms.csv | ||
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32 | 32 |
eventDate,eventDate |
33 | 33 |
family,family |
34 | 34 |
fieldNotes,fieldNotes |
35 |
fieldNumber,fieldNumber |
|
36 | 35 |
footprintWKT,footprintWKT |
37 | 36 |
genus,genus |
38 | 37 |
growthForm,growthForm |
... | ... | |
70 | 69 |
previousTag,previousTag |
71 | 70 |
projectID,projectID |
72 | 71 |
projectName,projectName |
72 |
recordNumber,recordNumber |
|
73 | 73 |
recordedBy.givenName,recordedBy.givenName |
74 | 74 |
recordedBy.surName,recordedBy.surName |
75 | 75 |
relativePlotX,relativePlotX |
mappings/VegCSV-VegBIEN.specimens.csv | ||
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51 | 51 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",Expanded for clarity,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.census_no,3 |
52 | 52 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/volumeCanopy,3 |
53 | 53 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
54 |
fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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54 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,,http://rs.tdwg.org/dwc/terms/#recordNumber,22
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55 | 55 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
56 | 56 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","values: direct, indirect",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.det_type,17 |
57 | 57 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
... | ... | |
71 | 71 |
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Table added for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/relativePlotPosition/relativeY,802 |
72 | 72 |
growthForm,/location/locationevent/taxonoccurrence/growthform,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#growthform1Type,62 |
73 | 73 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
74 |
fieldNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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74 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,,http://rs.tdwg.org/dwc/terms/#recordNumber,22
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75 | 75 |
scientificName,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
76 | 76 |
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#taxonRank","2, 151" |
77 | 77 |
computer.scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship","2, 153" |
mappings/VegCSV.self.specimens.csv | ||
---|---|---|
32 | 32 |
eventDate,eventDate |
33 | 33 |
family,family |
34 | 34 |
fieldNotes,fieldNotes |
35 |
fieldNumber,fieldNumber |
|
36 | 35 |
footprintWKT,footprintWKT |
37 | 36 |
genus,genus |
38 | 37 |
growthForm,growthForm |
... | ... | |
70 | 69 |
previousTag,previousTag |
71 | 70 |
projectID,projectID |
72 | 71 |
projectName,projectName |
72 |
recordNumber,recordNumber |
|
73 | 73 |
recordedBy.givenName,recordedBy.givenName |
74 | 74 |
recordedBy.surName,recordedBy.surName |
75 | 75 |
relativePlotX,relativePlotX |
mappings/for_review/VegCSV-VegBIEN.specimens.csv | ||
---|---|---|
51 | 51 |
censusNumber,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue",Expanded for clarity,http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.census_no,3 |
52 | 52 |
volumeCanopy,//aggregateoccurrence/linecover,,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/volumeCanopy,3 |
53 | 53 |
fieldNotes,//aggregateoccurrence/notes,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54 |
54 |
fieldNumber,//plantobservation/authorplantcode,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53
|
|
54 |
recordNumber,//plantobservation/authorplantcode,,http://rs.tdwg.org/dwc/terms/#recordNumber,22
|
|
55 | 55 |
occurrenceID,//plantobservation/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
56 | 56 |
voucherType,"//plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond","values: direct, indirect",http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.det_type,17 |
57 | 57 |
catalogNumber,"//plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
... | ... | |
71 | 71 |
relativePlotY,//stemobservation/yposition,Table added for clarity,http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/relativePlotPosition/relativeY,802 |
72 | 72 |
growthForm,//taxonoccurrence/growthform,,http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=observation&entity=dba_tabledescription&where=where_tablename#growthform1Type,62 |
73 | 73 |
occurrenceID,//taxonoccurrence/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
74 |
fieldNumber,//taxonoccurrence/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53
|
|
74 |
recordNumber,//taxonoccurrence/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#recordNumber,22
|
|
75 | 75 |
scientificName,//taxonoccurrence/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#scientificName,134 |
76 | 76 |
computer.taxonRank,//plantconcept/plantname_id[rank=subspecies]/plantname,,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#taxonRank","2, 151" |
77 | 77 |
computer.scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname,,"https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/schemas/vegbien.sql#role.computer, http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship","2, 153" |
mappings/VegCSV.self.stems.csv | ||
---|---|---|
32 | 32 |
eventDate,eventDate |
33 | 33 |
family,family |
34 | 34 |
fieldNotes,fieldNotes |
35 |
fieldNumber,fieldNumber |
|
36 | 35 |
footprintWKT,footprintWKT |
37 | 36 |
genus,genus |
38 | 37 |
growthForm,growthForm |
... | ... | |
70 | 69 |
previousTag,previousTag |
71 | 70 |
projectID,projectID |
72 | 71 |
projectName,projectName |
72 |
recordNumber,recordNumber |
|
73 | 73 |
recordedBy.givenName,recordedBy.givenName |
74 | 74 |
recordedBy.surName,recordedBy.surName |
75 | 75 |
relativePlotX,relativePlotX |
Also available in: Unified diff
mappings/VegCSV-VegBIEN.specimens.csv: Changed VegCSV term fieldNumber (from DwC) to recordNumber to be consistent with the TDWG meaning of fieldNumber, which defines it as the author code for the event, not the organism (what VegBIEN calls the authorlocationcode and VegBank calls the authorObsCode)