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Revision 3978

Added by Aaron Marcuse-Kubitza over 12 years ago

mappings/VegCSV-VegBIEN.specimens.csv: individualCount: Disambiguated alternate meaning as stem count by changing stem count fields to map to new stemCount term, which maps to plantobservation.stemcount

View differences:

inputs/SALVIAS-CSV/test/import.organisms.xml.ref
55 55 
                                </else>
56 56 
                            </_if>
57 57 
                        </specimenreplicate>
58 
                        <stemcount>$no_of_individuals</stemcount>
59 58 
                        <stemobservation>
60 59 
                            <basaldiameter>$basal_diam</basaldiameter>
61 60 
                            <definedvalue fkey="tablerecord_id">
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv
14 14 
det_type,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
15 15 
coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string
16 16 
voucher_string,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
17 
no_of_individuals,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
18 17 
basal_diam,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter,
19 18 
stem_canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
20 19 
stem_canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
inputs/SALVIAS/test/import.organisms.xml.ref
56 56 
                                </else>
57 57 
                            </_if>
58 58 
                        </specimenreplicate>
59 
                        <stemcount>$NoInd</stemcount>
60 59 
                        <stemobservation>
61 60 
                            <definedvalue fkey="tablerecord_id">
62 61 
                                <userdefined_id>
inputs/SALVIAS/test/import.stems.xml.ref
4 4 
        <locationevent>
5 5 
            <taxonoccurrence>
6 6 
                <aggregateoccurrence>
7 
                    <count>$NoInd</count>
8 7 
                    <plantobservation>
9 8 
                        <sourceaccessioncode>$PlotObsID</sourceaccessioncode>
10 9 
                        <stemcount>$NoInd</stemcount>
inputs/SALVIAS/maps/VegCSV.stems.csv
2 2 
stem_id,,
3 3 
origrecord_id_stems,,
4 4 
PlotObsID,occurrenceID,
5 
NoInd,individualCount,
5 
NoInd,stemCount,
6 6 
basal_diam,basalDiameter,
7 7 
stem_dbh,diameterBreastHeight,
8 8 
gentry_dbh,diameterBreastHeightGentry,
inputs/SALVIAS/maps/VegCSV.stems.full.csv
6 6 
gentry_dbh,diameterBreastHeightGentry,
7 7 
stem_height_m,height,
8 8 
stem_height_first_branch_m,heightFirstBranch,
9 
NoInd,individualCount,
10 9 
stem_liana_infestation,lianaInfestation,
11 10 
PlotObsID,occurrenceID,
12 11 
stem_tag2,previousTag,
12 
NoInd,stemCount,
13 13 
stem_notes,stemNotes,
14 14 
stem_tag1,tag,
15 15 
origrecord_id_stems,,
inputs/SALVIAS/maps/VegBIEN.stems.csv
1 1 
SALVIAS,VegBIEN:,Comments
2 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
3 2 
PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
4 3 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
5 4 
basal_diam,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter,
inputs/SALVIAS/maps/VegBIEN.organisms.csv
15 15 
DetType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
16 16 
coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string
17 17 
SourceVoucher,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
18 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
19 18 
canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
20 19 
canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
21 20 
liana_infestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
mappings/VegCSV.self.plots.csv
84 84 
sodium,sodium
85 85 
specificEpithet,specificEpithet
86 86 
stateProvince,stateProvince
87 
stemCount,stemCount
87 88 
stemNotes,stemNotes
88 89 
tag,tag
89 90 
temperature,temperature
mappings/VegCSV.self.organisms.csv
84 84 
sodium,sodium
85 85 
specificEpithet,specificEpithet
86 86 
stateProvince,stateProvince
87 
stemCount,stemCount
87 88 
stemNotes,stemNotes
88 89 
tag,tag
89 90 
temperature,temperature
mappings/VegCSV-VegBIEN.specimens.csv
1 
VegCSV[DwC],VegBIEN:,Comments
2 
plotArea,/location/area,
3 
verbatimElevation,/location/elevation/_alt/1,
4 
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_rangeEnd/value",
5 
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value",
6 
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value",
7 
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_rangeEnd/value",
8 
landform,/location/landform,
9 
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
10 
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,
11 
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
12 
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
13 
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
14 
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
15 
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
16 
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
17 
samplingProtocol,/location/locationevent/*_id/method/name,
18 
projectName,/location/locationevent/*_id/project/projectname,
19 
projectID,/location/locationevent/*_id/project/sourceaccessioncode,
20 
plotName,/location/locationevent/authoreventcode,
21 
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
22 
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
23 
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value,
24 
plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,
25 
parentLocationID,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,
26 
parentPlotName,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,
27 
parentPlotName,/location/locationevent/parent_id/locationevent/authoreventcode,
28 
parentLocationID,/location/locationevent/parent_id/locationevent/sourceaccessioncode,
29 
precipitation,/location/locationevent/precipitation,
30 
acidity,/location/locationevent/soilobs/acidity,
31 
baseSaturation,/location/locationevent/soilobs/basesaturation,
32 
calcium,/location/locationevent/soilobs/calcium,
33 
carbon,/location/locationevent/soilobs/carbon,
34 
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity,
35 
clay,/location/locationevent/soilobs/clay,
36 
conductivity,/location/locationevent/soilobs/conductivity,
37 
magnesium,/location/locationevent/soilobs/magnesium,
38 
nitrogen,/location/locationevent/soilobs/nitrogen,
39 
organic,/location/locationevent/soilobs/organic,
40 
ph,/location/locationevent/soilobs/ph,
41 
phosphorus,/location/locationevent/soilobs/phosphorus,
42 
potassium,/location/locationevent/soilobs/potassium,
43 
sand,/location/locationevent/soilobs/sand,
44 
silt,/location/locationevent/soilobs/silt,
45 
sodium,/location/locationevent/soilobs/sodium,
46 
texture,/location/locationevent/soilobs/texture,
47 
locationID,/location/locationevent/sourceaccessioncode,
48 
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value,
49 
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
50 
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
51 
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
52 
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,
53 
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
54 
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,
55 
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
56 
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
57 
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
58 
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
59 
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter,
60 
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
61 
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
62 
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
63 
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
64 
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
65 
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,
66 
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height,
67 
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch,
68 
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
69 
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
70 
relativePlotX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,
71 
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
72 
growthForm,/location/locationevent/taxonoccurrence/growthform,
73 
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,
74 
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,
75 
scientificName,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,
76 
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
77 
computer.scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
78 
computer.infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
79 
computer.specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
80 
computer.genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
81 
computer.family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
82 
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
83 
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit,
84 
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
85 
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
86 
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
87 
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
88 
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
89 
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
90 
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
91 
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
92 
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
93 
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,
94 
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,
95 
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
96 
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/then/catalognumber_dwc",
97 
temperature,/location/locationevent/temperature,
98 
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",
99 
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",
100 
locality,/location/locationnarrative,
101 
plotNotes,/location/notespublic,
102 
slopeAspect,/location/slopeaspect/_compass/value,
103 
slopeGradient,/location/slopegradient,
104 
parentLocationID,/location/sourceaccessioncode/_merge/1/_alt/1,
105 
parentPlotName,/location/sourceaccessioncode/_merge/1/_alt/2,
106 
locationID,/location/sourceaccessioncode/_merge/2/_alt/1,
107 
plotName,/location/sourceaccessioncode/_merge/2/_alt/2,
1 
"VegCSV[DwC]","VegBIEN:","Comments"
2 
"plotArea","/location/area",
3 
"verbatimElevation","/location/elevation/_alt/1",
4 
"maximumElevationInMeters","/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_rangeEnd/value",
5 
"minimumElevationInMeters","/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value",
6 
"minimumElevationInMeters","/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value",
7 
"maximumElevationInMeters","/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_rangeEnd/value",
8 
"landform","/location/landform",
9 
"coordinateUncertaintyInMeters","/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1",
10 
"footprintWKT","/location/locationdetermination/footprintgeometry_dwc",
11 
"decimalLatitude","/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
12 
"decimalLongitude","/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
13 
"county","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
14 
"stateProvince","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
15 
"country","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
16 
"continent","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
17 
"samplingProtocol","/location/locationevent/*_id/method/name",
18 
"projectName","/location/locationevent/*_id/project/projectname",
19 
"projectID","/location/locationevent/*_id/project/sourceaccessioncode",
20 
"plotName","/location/locationevent/authoreventcode",
21 
"communityID","/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname",
22 
"communityName","/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription",
23 
"plotEventEndDate","/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value",
24 
"plotEventStartDate","/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value",
25 
"parentLocationID","/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1",
26 
"parentPlotName","/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2",
27 
"parentPlotName","/location/locationevent/parent_id/locationevent/authoreventcode",
28 
"parentLocationID","/location/locationevent/parent_id/locationevent/sourceaccessioncode",
29 
"precipitation","/location/locationevent/precipitation",
30 
"acidity","/location/locationevent/soilobs/acidity",
31 
"baseSaturation","/location/locationevent/soilobs/basesaturation",
32 
"calcium","/location/locationevent/soilobs/calcium",
33 
"carbon","/location/locationevent/soilobs/carbon",
34 
"cationExchangeCapacity","/location/locationevent/soilobs/cationexchangecapacity",
35 
"clay","/location/locationevent/soilobs/clay",
36 
"conductivity","/location/locationevent/soilobs/conductivity",
37 
"magnesium","/location/locationevent/soilobs/magnesium",
38 
"nitrogen","/location/locationevent/soilobs/nitrogen",
39 
"organic","/location/locationevent/soilobs/organic",
40 
"ph","/location/locationevent/soilobs/ph",
41 
"phosphorus","/location/locationevent/soilobs/phosphorus",
42 
"potassium","/location/locationevent/soilobs/potassium",
43 
"sand","/location/locationevent/soilobs/sand",
44 
"silt","/location/locationevent/soilobs/silt",
45 
"sodium","/location/locationevent/soilobs/sodium",
46 
"texture","/location/locationevent/soilobs/texture",
47 
"locationID","/location/locationevent/sourceaccessioncode",
48 
"eventDate","/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value",
49 
"individualCount","/location/locationevent/taxonoccurrence/aggregateoccurrence/count",
50 
"coverPercent","/location/locationevent/taxonoccurrence/aggregateoccurrence/cover",
51 
"censusNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
52 
"volumeCanopy","/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover",
53 
"fieldNotes","/location/locationevent/taxonoccurrence/aggregateoccurrence/notes",
54 
"recordNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode",
55 
"occurrenceID","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode",
56 
"voucherType","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
57 
"catalogNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
58 
"stemCount","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount",
59 
"basalDiameter","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter",
60 
"canopyForm","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
61 
"canopyPosition","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
62 
"diameterBreastHeightGentry","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
63 
"lianaInfestation","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
64 
"stemNotes","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
65 
"diameterBreastHeight","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight",
66 
"height","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height",
67 
"heightFirstBranch","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch",
68 
"tag","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Quotes sort it before tag2"
69 
"previousTag","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag",
70 
"relativePlotX","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition",
71 
"relativePlotY","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition",
72 
"growthForm","/location/locationevent/taxonoccurrence/growthform",
73 
"occurrenceID","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1",
74 
"recordNumber","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2",
75 
"scientificName","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3",
76 
"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
77 
"computer.scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
78 
"computer.infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
79 
"computer.specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
80 
"computer.genus","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
81 
"computer.family","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
82 
"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
83 
"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit",
84 
"scientificName","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
85 
"scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
86 
"specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
87 
"genus","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
88 
"family","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
89 
"order","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
90 
"class","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
91 
"phylum","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
92 
"kingdom","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
93 
"recordedBy.givenName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first",
94 
"recordedBy.surName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last",
95 
"voucherType","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
96 
"catalogNumber","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/then/catalognumber_dwc",
97 
"temperature","/location/locationevent/temperature",
98 
"maximumDepthInMeters","/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",
99 
"minimumDepthInMeters","/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",
100 
"locality","/location/locationnarrative",
101 
"plotNotes","/location/notespublic",
102 
"slopeAspect","/location/slopeaspect/_compass/value",
103 
"slopeGradient","/location/slopegradient",
104 
"parentLocationID","/location/sourceaccessioncode/_merge/1/_alt/1",
105 
"parentPlotName","/location/sourceaccessioncode/_merge/1/_alt/2",
106 
"locationID","/location/sourceaccessioncode/_merge/2/_alt/1",
107 
"plotName","/location/sourceaccessioncode/_merge/2/_alt/2",
mappings/VegCSV.self.stems.csv
84 84 
sodium,sodium
85 85 
specificEpithet,specificEpithet
86 86 
stateProvince,stateProvince
87 
stemCount,stemCount
87 88 
stemNotes,stemNotes
88 89 
tag,tag
89 90 
temperature,temperature

Also available in: Unified diff