Revision 3979
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/XAL/test/import.specimens.xml.ref | ||
|---|---|---|
| 193 | 193 |
</plantobservation> |
| 194 | 194 |
</aggregateoccurrence> |
| 195 | 195 |
<taxondetermination> |
| 196 |
<iscurrent>true</iscurrent> |
|
| 196 | 197 |
<role>identifier</role> |
| 198 |
<party_id> |
|
| 199 |
<party> |
|
| 200 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 201 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 202 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 203 |
</party> |
|
| 204 |
</party_id> |
|
| 197 | 205 |
<determinationdate> |
| 198 | 206 |
<_date> |
| 199 | 207 |
<date> |
| ... | ... | |
| 231 | 239 |
</date> |
| 232 | 240 |
</_date> |
| 233 | 241 |
</determinationdate> |
| 234 |
<iscurrent>true</iscurrent> |
|
| 235 |
<party_id> |
|
| 236 |
<party> |
|
| 237 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 238 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 239 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 240 |
</party> |
|
| 241 |
</party_id> |
|
| 242 | 242 |
<isoriginal>true</isoriginal> |
| 243 | 243 |
<plantconcept_id> |
| 244 | 244 |
<plantconcept> |
| inputs/XAL/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 21 | 21 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 22 | 22 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
| 23 | 23 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 24 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 25 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 26 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 27 | 24 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 28 | 25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 29 | 26 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 27 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 28 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 29 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 30 | 30 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 31 | 31 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 32 | 32 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| inputs/NY/test/import.specimens.xml.ref | ||
|---|---|---|
| 224 | 224 |
</plantobservation> |
| 225 | 225 |
</aggregateoccurrence> |
| 226 | 226 |
<taxondetermination> |
| 227 |
<iscurrent>true</iscurrent> |
|
| 227 | 228 |
<role>identifier</role> |
| 229 |
<party_id> |
|
| 230 |
<party> |
|
| 231 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 232 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 233 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 234 |
</party> |
|
| 235 |
</party_id> |
|
| 228 | 236 |
<determinationdate> |
| 229 | 237 |
<_date> |
| 230 | 238 |
<date> |
| ... | ... | |
| 262 | 270 |
</date> |
| 263 | 271 |
</_date> |
| 264 | 272 |
</determinationdate> |
| 265 |
<iscurrent>true</iscurrent> |
|
| 266 |
<party_id> |
|
| 267 |
<party> |
|
| 268 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 269 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 270 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 271 |
</party> |
|
| 272 |
</party_id> |
|
| 273 | 273 |
<isoriginal>true</isoriginal> |
| 274 | 274 |
<plantconcept_id> |
| 275 | 275 |
<plantconcept> |
| inputs/NY/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 24 | 24 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
| 25 | 25 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 26 | 26 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 27 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 28 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 29 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 30 | 27 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 31 | 28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 32 | 29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 30 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 31 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 32 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 33 | 33 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 34 | 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 35 | 35 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| inputs/ACAD/test/import.specimens.xml.ref | ||
|---|---|---|
| 75 | 75 |
</plantobservation> |
| 76 | 76 |
</aggregateoccurrence> |
| 77 | 77 |
<taxondetermination> |
| 78 |
<iscurrent>true</iscurrent> |
|
| 78 | 79 |
<role>identifier</role> |
| 79 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
| 80 |
<iscurrent>true</iscurrent> |
|
| 81 | 80 |
<party_id> |
| 82 | 81 |
<party> |
| 83 | 82 |
<givenname><_namePart><first>$identifiedBy</first></_namePart></givenname> |
| ... | ... | |
| 85 | 84 |
<surname><_namePart><last>$identifiedBy</last></_namePart></surname> |
| 86 | 85 |
</party> |
| 87 | 86 |
</party_id> |
| 87 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
| 88 | 88 |
<isoriginal>true</isoriginal> |
| 89 | 89 |
<plantconcept_id> |
| 90 | 90 |
<plantconcept> |
| inputs/ACAD/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 12 | 12 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
| 13 | 13 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 14 | 14 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 15 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 16 | 15 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 17 | 16 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 18 | 17 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 18 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 19 | 19 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 20 | 20 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 21 | 21 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| inputs/SALVIAS-CSV/test/import.organisms.xml.ref | ||
|---|---|---|
| 163 | 163 |
</_alt> |
| 164 | 164 |
</sourceaccessioncode> |
| 165 | 165 |
<taxondetermination> |
| 166 |
<iscurrent>true</iscurrent> |
|
| 166 | 167 |
<role>computer</role> |
| 167 | 168 |
<plantconcept_id> |
| 168 | 169 |
<plantconcept> |
| ... | ... | |
| 176 | 177 |
<parent_id> |
| 177 | 178 |
<plantname> |
| 178 | 179 |
<rank>authority</rank> |
| 180 |
<plantname>$specific_authority</plantname> |
|
| 179 | 181 |
<parent_id> |
| 180 | 182 |
<plantname> |
| 181 | 183 |
<rank>subspecies</rank> |
| ... | ... | |
| 205 | 207 |
</parent_id> |
| 206 | 208 |
</plantname> |
| 207 | 209 |
</parent_id> |
| 208 |
<plantname>$specific_authority</plantname> |
|
| 209 | 210 |
</plantname> |
| 210 | 211 |
</parent_id> |
| 211 | 212 |
</plantname> |
| ... | ... | |
| 214 | 215 |
</plantname_id> |
| 215 | 216 |
</plantconcept> |
| 216 | 217 |
</plantconcept_id> |
| 217 |
<iscurrent>true</iscurrent> |
|
| 218 | 218 |
</taxondetermination> |
| 219 | 219 |
<taxondetermination> |
| 220 |
<role>identifier</role> |
|
| 221 |
<taxonfit>$cf_aff</taxonfit> |
|
| 222 | 220 |
<isoriginal>true</isoriginal> |
| 223 | 221 |
<iscurrent>true</iscurrent> |
| 222 |
<role>identifier</role> |
|
| 224 | 223 |
<plantconcept_id> |
| 225 | 224 |
<plantconcept> |
| 226 | 225 |
<plantname_id> |
| ... | ... | |
| 263 | 262 |
</plantname_id> |
| 264 | 263 |
</plantconcept> |
| 265 | 264 |
</plantconcept_id> |
| 265 |
<taxonfit>$cf_aff</taxonfit> |
|
| 266 | 266 |
</taxondetermination> |
| 267 | 267 |
<verbatimcollectorname> |
| 268 | 268 |
<_name> |
| inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 34 | 34 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 35 | 35 |
individual_code,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| 36 | 36 |
orig_species,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT |
| 37 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 38 | 37 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
| 38 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 39 | 39 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| 40 | 40 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| 41 | 41 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 42 | 42 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| 43 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
|
| 44 | 43 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT |
| 45 | 44 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT |
| 45 |
cf_aff,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/taxonfit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
|
| 46 | 46 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 47 | 47 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 48 | 48 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/SALVIAS/test/import.organisms.xml.ref | ||
|---|---|---|
| 139 | 139 |
</_alt> |
| 140 | 140 |
</sourceaccessioncode> |
| 141 | 141 |
<taxondetermination> |
| 142 |
<iscurrent>true</iscurrent> |
|
| 142 | 143 |
<role>computer</role> |
| 143 | 144 |
<plantconcept_id> |
| 144 | 145 |
<plantconcept> |
| ... | ... | |
| 152 | 153 |
<parent_id> |
| 153 | 154 |
<plantname> |
| 154 | 155 |
<rank>authority</rank> |
| 156 |
<plantname>$auth</plantname> |
|
| 155 | 157 |
<parent_id> |
| 156 | 158 |
<plantname> |
| 157 | 159 |
<rank>subspecies</rank> |
| ... | ... | |
| 181 | 183 |
</parent_id> |
| 182 | 184 |
</plantname> |
| 183 | 185 |
</parent_id> |
| 184 |
<plantname>$auth</plantname> |
|
| 185 | 186 |
</plantname> |
| 186 | 187 |
</parent_id> |
| 187 | 188 |
</plantname> |
| ... | ... | |
| 190 | 191 |
</plantname_id> |
| 191 | 192 |
</plantconcept> |
| 192 | 193 |
</plantconcept_id> |
| 193 |
<iscurrent>true</iscurrent> |
|
| 194 | 194 |
</taxondetermination> |
| 195 | 195 |
<taxondetermination> |
| 196 |
<role>identifier</role> |
|
| 197 |
<taxonfit>$cfaff</taxonfit> |
|
| 198 | 196 |
<isoriginal>true</isoriginal> |
| 199 | 197 |
<iscurrent>true</iscurrent> |
| 198 |
<role>identifier</role> |
|
| 200 | 199 |
<plantconcept_id> |
| 201 | 200 |
<plantconcept> |
| 202 | 201 |
<plantname_id> |
| ... | ... | |
| 244 | 243 |
</plantname_id> |
| 245 | 244 |
</plantconcept> |
| 246 | 245 |
</plantconcept_id> |
| 246 |
<taxonfit>$cfaff</taxonfit> |
|
| 247 | 247 |
</taxondetermination> |
| 248 | 248 |
<verbatimcollectorname> |
| 249 | 249 |
<_name> |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 30 | 30 |
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| 31 | 31 |
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/first, |
| 32 | 32 |
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT |
| 33 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 34 | 33 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
| 34 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 35 | 35 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| 36 | 36 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| 37 | 37 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 38 | 38 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| 39 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
|
| 40 | 39 |
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first", |
| 41 | 40 |
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT |
| 42 | 41 |
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT |
| 42 |
cfaff,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/taxonfit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
|
| 43 | 43 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 44 | 44 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 45 | 45 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/U/test/import.specimens.xml.ref | ||
|---|---|---|
| 97 | 97 |
</plantobservation> |
| 98 | 98 |
</aggregateoccurrence> |
| 99 | 99 |
<taxondetermination> |
| 100 |
<iscurrent>true</iscurrent> |
|
| 100 | 101 |
<role>identifier</role> |
| 102 |
<party_id> |
|
| 103 |
<party> |
|
| 104 |
<givenname><_namePart><first>$Detby</first></_namePart></givenname> |
|
| 105 |
<middlename><_namePart><middle>$Detby</middle></_namePart></middlename> |
|
| 106 |
<surname><_namePart><last>$Detby</last></_namePart></surname> |
|
| 107 |
</party> |
|
| 108 |
</party_id> |
|
| 101 | 109 |
<determinationdate> |
| 102 | 110 |
<_date> |
| 103 | 111 |
<date> |
| ... | ... | |
| 122 | 130 |
</_date> |
| 123 | 131 |
</determinationdate> |
| 124 | 132 |
<taxonfit>$cf</taxonfit> |
| 125 |
<iscurrent>true</iscurrent> |
|
| 126 |
<party_id> |
|
| 127 |
<party> |
|
| 128 |
<givenname><_namePart><first>$Detby</first></_namePart></givenname> |
|
| 129 |
<middlename><_namePart><middle>$Detby</middle></_namePart></middlename> |
|
| 130 |
<surname><_namePart><last>$Detby</last></_namePart></surname> |
|
| 131 |
</party> |
|
| 132 |
</party_id> |
|
| 133 | 133 |
<isoriginal>true</isoriginal> |
| 134 | 134 |
<plantconcept_id> |
| 135 | 135 |
<plantconcept> |
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 9 | 9 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 10 | 10 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
| 11 | 11 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 12 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 13 |
cf,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 14 | 12 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 15 | 13 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 16 | 14 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 15 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 16 |
cf,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 17 | 17 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 18 | 18 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| 19 | 19 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/1, |
| inputs/ARIZ/test/import.specimens.xml.ref | ||
|---|---|---|
| 210 | 210 |
</plantobservation> |
| 211 | 211 |
</aggregateoccurrence> |
| 212 | 212 |
<taxondetermination> |
| 213 |
<iscurrent>true</iscurrent> |
|
| 213 | 214 |
<role>identifier</role> |
| 215 |
<party_id> |
|
| 216 |
<party> |
|
| 217 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 218 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 219 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 220 |
</party> |
|
| 221 |
</party_id> |
|
| 214 | 222 |
<determinationdate> |
| 215 | 223 |
<_date> |
| 216 | 224 |
<date> |
| ... | ... | |
| 250 | 258 |
</determinationdate> |
| 251 | 259 |
<notes>$Remarks</notes> |
| 252 | 260 |
<taxonfit>$IdentificationModifier</taxonfit> |
| 253 |
<iscurrent>true</iscurrent> |
|
| 254 |
<party_id> |
|
| 255 |
<party> |
|
| 256 |
<givenname><_namePart><first>$IdentifiedBy</first></_namePart></givenname> |
|
| 257 |
<middlename><_namePart><middle>$IdentifiedBy</middle></_namePart></middlename> |
|
| 258 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
|
| 259 |
</party> |
|
| 260 |
</party_id> |
|
| 261 | 261 |
<isoriginal>true</isoriginal> |
| 262 | 262 |
<plantconcept_id> |
| 263 | 263 |
<plantconcept> |
| inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 26 | 26 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
| 27 | 27 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 28 | 28 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 29 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 30 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 31 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 32 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 33 |
IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 34 | 29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 35 | 30 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 36 | 31 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 32 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 33 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 34 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 35 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 36 |
IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 37 | 37 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/1",Contains the binomial in addition to the authority |
| 38 | 38 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/2", |
| 39 | 39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| inputs/SpeciesLink/test/import.specimens.xml.ref | ||
|---|---|---|
| 327 | 327 |
</plantobservation> |
| 328 | 328 |
</aggregateoccurrence> |
| 329 | 329 |
<taxondetermination> |
| 330 |
<iscurrent>true</iscurrent> |
|
| 330 | 331 |
<role>identifier</role> |
| 332 |
<party_id> |
|
| 333 |
<party> |
|
| 334 |
<givenname> |
|
| 335 |
<_namePart> |
|
| 336 |
<first> |
|
| 337 |
<_alt> |
|
| 338 |
<0>$dwc_curatorial_IdentifiedBy</0> |
|
| 339 |
<1>$conceptual_darwin_2003_1_0_IdentifiedBy</1> |
|
| 340 |
<2>$dwc_terms_identifiedBy</2> |
|
| 341 |
</_alt> |
|
| 342 |
</first> |
|
| 343 |
</_namePart> |
|
| 344 |
</givenname> |
|
| 345 |
<middlename> |
|
| 346 |
<_namePart> |
|
| 347 |
<middle> |
|
| 348 |
<_alt> |
|
| 349 |
<0>$dwc_curatorial_IdentifiedBy</0> |
|
| 350 |
<1>$conceptual_darwin_2003_1_0_IdentifiedBy</1> |
|
| 351 |
<2>$dwc_terms_identifiedBy</2> |
|
| 352 |
</_alt> |
|
| 353 |
</middle> |
|
| 354 |
</_namePart> |
|
| 355 |
</middlename> |
|
| 356 |
<surname> |
|
| 357 |
<_namePart> |
|
| 358 |
<last> |
|
| 359 |
<_alt> |
|
| 360 |
<0>$dwc_curatorial_IdentifiedBy</0> |
|
| 361 |
<1>$conceptual_darwin_2003_1_0_IdentifiedBy</1> |
|
| 362 |
<2>$dwc_terms_identifiedBy</2> |
|
| 363 |
</_alt> |
|
| 364 |
</last> |
|
| 365 |
</_namePart> |
|
| 366 |
</surname> |
|
| 367 |
</party> |
|
| 368 |
</party_id> |
|
| 331 | 369 |
<determinationdate> |
| 332 | 370 |
<_date> |
| 333 | 371 |
<date> |
| ... | ... | |
| 367 | 405 |
</_date> |
| 368 | 406 |
</determinationdate> |
| 369 | 407 |
<notes>$dwc_dwcore_Remarks</notes> |
| 370 |
<iscurrent>true</iscurrent> |
|
| 371 |
<party_id> |
|
| 372 |
<party> |
|
| 373 |
<givenname> |
|
| 374 |
<_namePart> |
|
| 375 |
<first> |
|
| 376 |
<_alt> |
|
| 377 |
<0>$dwc_curatorial_IdentifiedBy</0> |
|
| 378 |
<1>$conceptual_darwin_2003_1_0_IdentifiedBy</1> |
|
| 379 |
<2>$dwc_terms_identifiedBy</2> |
|
| 380 |
</_alt> |
|
| 381 |
</first> |
|
| 382 |
</_namePart> |
|
| 383 |
</givenname> |
|
| 384 |
<middlename> |
|
| 385 |
<_namePart> |
|
| 386 |
<middle> |
|
| 387 |
<_alt> |
|
| 388 |
<0>$dwc_curatorial_IdentifiedBy</0> |
|
| 389 |
<1>$conceptual_darwin_2003_1_0_IdentifiedBy</1> |
|
| 390 |
<2>$dwc_terms_identifiedBy</2> |
|
| 391 |
</_alt> |
|
| 392 |
</middle> |
|
| 393 |
</_namePart> |
|
| 394 |
</middlename> |
|
| 395 |
<surname> |
|
| 396 |
<_namePart> |
|
| 397 |
<last> |
|
| 398 |
<_alt> |
|
| 399 |
<0>$dwc_curatorial_IdentifiedBy</0> |
|
| 400 |
<1>$conceptual_darwin_2003_1_0_IdentifiedBy</1> |
|
| 401 |
<2>$dwc_terms_identifiedBy</2> |
|
| 402 |
</_alt> |
|
| 403 |
</last> |
|
| 404 |
</_namePart> |
|
| 405 |
</surname> |
|
| 406 |
</party> |
|
| 407 |
</party_id> |
|
| 408 | 408 |
<isoriginal>true</isoriginal> |
| 409 | 409 |
<plantconcept_id> |
| 410 | 410 |
<plantconcept> |
| inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 54 | 54 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 55 | 55 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 56 | 56 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 57 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 58 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 59 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 60 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 61 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 62 | 57 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 63 | 58 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 64 | 59 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 65 | 60 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 66 | 61 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 67 | 62 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 63 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 64 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 65 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 66 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 67 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 68 | 68 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 69 | 69 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 70 | 70 |
AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| inputs/QMOR/test/import.specimens.xml.ref | ||
|---|---|---|
| 171 | 171 |
</plantobservation> |
| 172 | 172 |
</aggregateoccurrence> |
| 173 | 173 |
<taxondetermination> |
| 174 |
<iscurrent>true</iscurrent> |
|
| 174 | 175 |
<role>identifier</role> |
| 175 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
| 176 |
<taxonfit>$identificationQualifier</taxonfit> |
|
| 177 |
<iscurrent>true</iscurrent> |
|
| 178 | 176 |
<party_id> |
| 179 | 177 |
<party> |
| 180 | 178 |
<givenname><_namePart><first>$identifiedBy</first></_namePart></givenname> |
| ... | ... | |
| 182 | 180 |
<surname><_namePart><last>$identifiedBy</last></_namePart></surname> |
| 183 | 181 |
</party> |
| 184 | 182 |
</party_id> |
| 183 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
| 184 |
<taxonfit>$identificationQualifier</taxonfit> |
|
| 185 | 185 |
<isoriginal>true</isoriginal> |
| 186 | 186 |
<plantconcept_id> |
| 187 | 187 |
<plantconcept> |
| inputs/QMOR/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 21 | 21 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
| 22 | 22 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 23 | 23 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 24 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 25 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 26 | 24 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 27 | 25 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 28 | 26 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 27 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 28 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 29 | 29 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 30 | 30 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 31 | 31 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| mappings/VegCSV-VegBIEN.specimens.csv | ||
|---|---|---|
| 73 | 73 |
"occurrenceID","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1", |
| 74 | 74 |
"recordNumber","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2", |
| 75 | 75 |
"scientificName","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3", |
| 76 |
"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 76 |
"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
|
|
| 77 | 77 |
"computer.scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 78 | 78 |
"computer.infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| 79 | 79 |
"computer.specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| 80 | 80 |
"computer.genus","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 81 | 81 |
"computer.family","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| 82 |
"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
| 83 |
"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit", |
|
| 82 |
"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
| 83 |
"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/taxonfit",
|
|
| 84 | 84 |
"scientificName","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 85 | 85 |
"scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 86 | 86 |
"specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 27 | 27 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 28 | 28 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 29 | 29 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 30 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value, |
|
| 31 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 32 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 33 | 30 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 34 | 31 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 35 | 32 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 33 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value, |
|
| 34 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 35 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 36 | 36 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 37 | 37 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 38 | 38 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 27 | 27 |
occurrenceID,//specimenreplicate/sourceaccessioncode, |
| 28 | 28 |
establishmentMeans,//taxonoccurrence/iscultivated, |
| 29 | 29 |
establishmentMeans,//taxonoccurrence/isnative, |
| 30 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname, |
|
| 31 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename, |
|
| 32 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname, |
|
| 30 | 33 |
dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date, |
| 31 | 34 |
taxonRemarks,//taxonoccurrence/taxondetermination[role=identifier]/notes, |
| 32 | 35 |
identificationQualifier,//taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
| 33 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname, |
|
| 34 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename, |
|
| 35 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname, |
|
| 36 | 36 |
scientificName,//plantconcept/plantname_id[rank=binomial]/plantname, |
| 37 | 37 |
scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname, |
| 38 | 38 |
infraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname, |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 93 | 93 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 94 | 94 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 95 | 95 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 96 |
DateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
|
| 97 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
|
| 98 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 99 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 100 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 101 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 102 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 103 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 104 |
DateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 105 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 106 |
IdentifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3, |
|
| 107 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3, |
|
| 108 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 109 |
TaxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 110 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 111 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 112 |
IdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 113 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 114 | 96 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 115 | 97 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 116 | 98 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 117 | 99 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 118 | 100 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 119 | 101 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 102 |
DateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
|
| 103 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
|
| 104 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 105 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 106 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 107 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 108 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 109 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 110 |
DateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 111 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 112 |
IdentifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3, |
|
| 113 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3, |
|
| 114 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 115 |
TaxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 116 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 117 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 118 |
IdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 119 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 120 | 120 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 121 | 121 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 122 | 122 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 46 | 46 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 47 | 47 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 48 | 48 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 49 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
|
| 50 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 51 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 52 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 53 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 54 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3, |
|
| 55 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 56 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/notes, |
|
| 57 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
|
| 58 | 49 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first, |
| 59 | 50 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle, |
| 60 | 51 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last, |
| 52 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
|
| 53 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 54 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 55 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 56 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2, |
|
| 57 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3, |
|
| 58 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 59 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes, |
|
| 60 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit, |
|
| 61 | 61 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 62 | 62 |
scientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 63 | 63 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: taxondetermination mappings: Ensure all mappings have :[iscurrent=true] or equivalent so that they sort together, and match up between DwC and VegCSV