Revision 3980
Added by Aaron Marcuse-Kubitza over 12 years ago
mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
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30 | 30 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname, |
31 | 31 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename, |
32 | 32 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname, |
33 |
dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date, |
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34 |
taxonRemarks,//taxonoccurrence/taxondetermination[role=identifier]/notes, |
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35 |
identificationQualifier,//taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
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36 | 33 |
scientificName,//plantconcept/plantname_id[rank=binomial]/plantname, |
37 | 34 |
scientificNameAuthorship,//plantconcept/plantname_id[rank=authority]/plantname, |
38 | 35 |
infraspecificEpithet,//plantconcept/plantname_id[rank=subspecies]/plantname, |
... | ... | |
43 | 40 |
class,//plantconcept/plantname_id[rank=class]/plantname, |
44 | 41 |
phylum,//plantconcept/plantname_id[rank=subkingdom]/plantname, |
45 | 42 |
kingdom,//plantconcept/plantname_id[rank=kingdom]/plantname, |
43 |
dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date, |
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44 |
taxonRemarks,//taxonoccurrence/taxondetermination[role=identifier]/notes, |
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45 |
identificationQualifier,//taxonoccurrence/taxondetermination[role=identifier]/taxonfit, |
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46 | 46 |
recordedBy,//taxonoccurrence/verbatimcollectorname, |
47 | 47 |
maximumDepthInMeters,//locationevent/waterdepth, |
48 | 48 |
minimumDepthInMeters,//locationevent/waterdepth, |
inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
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11 | 11 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
12 | 12 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
13 | 13 |
Cultivated?,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
14 |
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
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14 |
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
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15 | 15 |
Accession Number,/location/sourceaccessioncode/_alt/1, |
16 | 16 |
SeriesName,/location/sourceaccessioncode/_alt/2/_merge/2, |
17 | 17 |
Barcode,/location/sourceaccessioncode/_alt/2/_merge/3, |
inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
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54 | 54 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
55 | 55 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
56 | 56 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
57 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
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58 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
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59 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
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60 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
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61 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
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62 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
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63 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
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MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
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65 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
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66 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
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67 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
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ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
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69 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
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AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
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ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",`union` would otherwise remove this input name because it's been mapped to (renamed) above
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scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
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73 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
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74 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
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75 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
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76 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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77 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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78 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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79 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
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80 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
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81 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
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82 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
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83 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
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order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
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Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
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class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
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87 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
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88 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
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89 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
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90 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
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57 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
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58 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
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59 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
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60 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
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61 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
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62 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
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ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
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scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
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AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
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ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",`union` would otherwise remove this input name because it's been mapped to (renamed) above
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scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
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68 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
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Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
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71 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
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Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
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family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
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78 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
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order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
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Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
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class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
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82 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
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phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
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84 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
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kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
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86 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
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87 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
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YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
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89 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
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90 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
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|
91 | 91 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
92 | 92 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
93 | 93 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value", |
inputs/MO/maps/VegBIEN.specimens.csv | ||
---|---|---|
18 | 18 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
19 | 19 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
20 | 20 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
21 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
22 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
23 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
24 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
25 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
26 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
27 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
28 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
29 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
30 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
21 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
22 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
23 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
24 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
25 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
26 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
27 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
28 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
29 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
30 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
31 | 31 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
32 | 32 |
Locality,/location/locationnarrative/_merge/1, |
33 | 33 |
InstitutionCode,/location/sourceaccessioncode/_alt/2/_merge/1, |
inputs/QMOR/maps/VegBIEN.specimens.csv | ||
---|---|---|
21 | 21 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
22 | 22 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
23 | 23 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
24 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
25 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
26 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
27 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
28 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
29 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
30 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
31 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
32 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
33 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
34 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
35 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
36 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
37 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
38 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
24 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
25 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
26 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
27 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
28 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
29 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
30 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
31 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
32 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
33 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
34 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
35 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
36 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
37 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
38 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
39 | 39 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
40 | 40 |
locality,/location/locationnarrative/_merge/1, |
41 | 41 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
mappings/DwC2-VegBIEN.specimens.csv | ||
---|---|---|
27 | 27 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
28 | 28 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
29 | 29 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
30 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
31 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
32 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
33 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value,
|
|
34 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
35 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
36 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
37 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
38 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
39 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
40 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
41 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
42 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
43 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
44 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
45 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
30 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
31 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
32 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
33 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
34 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
35 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
36 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
37 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
38 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
39 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
40 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
41 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
42 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
43 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value,
|
|
44 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
45 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
46 | 46 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
47 | 47 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value", |
48 | 48 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value", |
mappings/DwC.cs-VegBIEN.specimens.csv | ||
---|---|---|
46 | 46 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
47 | 47 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
48 | 48 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
49 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
50 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
51 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
52 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping
|
|
53 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
54 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
55 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
56 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
57 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,
|
|
58 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
59 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
60 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
61 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
62 |
scientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
63 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
64 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
65 |
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
66 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
67 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
68 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
69 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
70 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
71 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
72 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
73 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
49 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
50 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
51 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
52 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
53 |
scientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
54 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
55 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
56 |
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
57 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
58 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
59 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
60 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
61 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
62 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
63 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
64 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
65 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping
|
|
66 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
67 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
68 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
69 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
70 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,
|
|
71 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
72 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
73 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
74 | 74 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
75 | 75 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
76 | 76 |
maximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value", |
inputs/MT/test/import.specimens.xml.ref | ||
---|---|---|
64 | 64 |
</isnative> |
65 | 65 |
<taxondetermination> |
66 | 66 |
<isoriginal>true</isoriginal> |
67 |
<iscurrent>true</iscurrent> |
|
68 | 67 |
<role>identifier</role> |
69 | 68 |
<plantconcept_id> |
70 | 69 |
<plantconcept> |
inputs/MT/maps/VegBIEN.specimens.csv | ||
---|---|---|
6 | 6 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
7 | 7 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
8 | 8 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
9 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
10 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
9 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
10 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
11 | 11 |
locality,/location/locationnarrative/_merge/1, |
12 | 12 |
id,/location/sourceaccessioncode/_alt/1, |
13 | 13 |
institutionCode,/location/sourceaccessioncode/_alt/2/_merge/1, |
inputs/XAL/test/import.specimens.xml.ref | ||
---|---|---|
193 | 193 |
</plantobservation> |
194 | 194 |
</aggregateoccurrence> |
195 | 195 |
<taxondetermination> |
196 |
<iscurrent>true</iscurrent>
|
|
196 |
<isoriginal>true</isoriginal>
|
|
197 | 197 |
<role>identifier</role> |
198 | 198 |
<party_id> |
199 | 199 |
<party> |
... | ... | |
202 | 202 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
203 | 203 |
</party> |
204 | 204 |
</party_id> |
205 |
<determinationdate> |
|
206 |
<_date> |
|
207 |
<date> |
|
208 |
<_dateRangeStart> |
|
209 |
<value> |
|
210 |
<_alt> |
|
211 |
<1> |
|
212 |
<_date> |
|
213 |
<day> |
|
214 |
<_nullIf> |
|
215 |
<null>0</null> |
|
216 |
<type>float</type> |
|
217 |
<value>$DayIdentified</value> |
|
218 |
</_nullIf> |
|
219 |
</day> |
|
220 |
<month> |
|
221 |
<_nullIf> |
|
222 |
<null>0</null> |
|
223 |
<type>float</type> |
|
224 |
<value>$MonthIdentified</value> |
|
225 |
</_nullIf> |
|
226 |
</month> |
|
227 |
<year> |
|
228 |
<_nullIf> |
|
229 |
<null>0</null> |
|
230 |
<type>float</type> |
|
231 |
<value>$YearIdentified</value> |
|
232 |
</_nullIf> |
|
233 |
</year> |
|
234 |
</_date> |
|
235 |
</1> |
|
236 |
</_alt> |
|
237 |
</value> |
|
238 |
</_dateRangeStart> |
|
239 |
</date> |
|
240 |
</_date> |
|
241 |
</determinationdate> |
|
242 |
<isoriginal>true</isoriginal> |
|
243 | 205 |
<plantconcept_id> |
244 | 206 |
<plantconcept> |
245 | 207 |
<plantname_id> |
... | ... | |
310 | 272 |
</plantname_id> |
311 | 273 |
</plantconcept> |
312 | 274 |
</plantconcept_id> |
275 |
<determinationdate> |
|
276 |
<_date> |
|
277 |
<date> |
|
278 |
<_dateRangeStart> |
|
279 |
<value> |
|
280 |
<_alt> |
|
281 |
<1> |
|
282 |
<_date> |
|
283 |
<day> |
|
284 |
<_nullIf> |
|
285 |
<null>0</null> |
|
286 |
<type>float</type> |
|
287 |
<value>$DayIdentified</value> |
|
288 |
</_nullIf> |
|
289 |
</day> |
|
290 |
<month> |
|
291 |
<_nullIf> |
|
292 |
<null>0</null> |
|
293 |
<type>float</type> |
|
294 |
<value>$MonthIdentified</value> |
|
295 |
</_nullIf> |
|
296 |
</month> |
|
297 |
<year> |
|
298 |
<_nullIf> |
|
299 |
<null>0</null> |
|
300 |
<type>float</type> |
|
301 |
<value>$YearIdentified</value> |
|
302 |
</_nullIf> |
|
303 |
</year> |
|
304 |
</_date> |
|
305 |
</1> |
|
306 |
</_alt> |
|
307 |
</value> |
|
308 |
</_dateRangeStart> |
|
309 |
</date> |
|
310 |
</_date> |
|
311 |
</determinationdate> |
|
313 | 312 |
</taxondetermination> |
314 | 313 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
315 | 314 |
</taxonoccurrence> |
inputs/XAL/maps/VegBIEN.specimens.csv | ||
---|---|---|
21 | 21 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
22 | 22 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
23 | 23 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
24 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
26 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
27 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
28 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
29 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
30 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
31 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
32 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
33 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
34 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
36 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
37 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
38 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
39 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
24 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
26 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
27 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
28 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
29 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
30 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
32 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
33 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
34 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
35 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
36 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
37 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
38 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
39 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
40 | 40 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
41 | 41 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value", |
42 | 42 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value", |
inputs/NY/test/import.specimens.xml.ref | ||
---|---|---|
224 | 224 |
</plantobservation> |
225 | 225 |
</aggregateoccurrence> |
226 | 226 |
<taxondetermination> |
227 |
<iscurrent>true</iscurrent>
|
|
227 |
<isoriginal>true</isoriginal>
|
|
228 | 228 |
<role>identifier</role> |
229 | 229 |
<party_id> |
230 | 230 |
<party> |
... | ... | |
233 | 233 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
234 | 234 |
</party> |
235 | 235 |
</party_id> |
236 |
<determinationdate> |
|
237 |
<_date> |
|
238 |
<date> |
|
239 |
<_dateRangeStart> |
|
240 |
<value> |
|
241 |
<_alt> |
|
242 |
<1> |
|
243 |
<_date> |
|
244 |
<day> |
|
245 |
<_nullIf> |
|
246 |
<null>0</null> |
|
247 |
<type>float</type> |
|
248 |
<value>$DayIdentified</value> |
|
249 |
</_nullIf> |
|
250 |
</day> |
|
251 |
<month> |
|
252 |
<_nullIf> |
|
253 |
<null>0</null> |
|
254 |
<type>float</type> |
|
255 |
<value>$MonthIdentified</value> |
|
256 |
</_nullIf> |
|
257 |
</month> |
|
258 |
<year> |
|
259 |
<_nullIf> |
|
260 |
<null>0</null> |
|
261 |
<type>float</type> |
|
262 |
<value>$YearIdentified</value> |
|
263 |
</_nullIf> |
|
264 |
</year> |
|
265 |
</_date> |
|
266 |
</1> |
|
267 |
</_alt> |
|
268 |
</value> |
|
269 |
</_dateRangeStart> |
|
270 |
</date> |
|
271 |
</_date> |
|
272 |
</determinationdate> |
|
273 |
<isoriginal>true</isoriginal> |
|
274 | 236 |
<plantconcept_id> |
275 | 237 |
<plantconcept> |
276 | 238 |
<plantname_id> |
... | ... | |
341 | 303 |
</plantname_id> |
342 | 304 |
</plantconcept> |
343 | 305 |
</plantconcept_id> |
306 |
<determinationdate> |
|
307 |
<_date> |
|
308 |
<date> |
|
309 |
<_dateRangeStart> |
|
310 |
<value> |
|
311 |
<_alt> |
|
312 |
<1> |
|
313 |
<_date> |
|
314 |
<day> |
|
315 |
<_nullIf> |
|
316 |
<null>0</null> |
|
317 |
<type>float</type> |
|
318 |
<value>$DayIdentified</value> |
|
319 |
</_nullIf> |
|
320 |
</day> |
|
321 |
<month> |
|
322 |
<_nullIf> |
|
323 |
<null>0</null> |
|
324 |
<type>float</type> |
|
325 |
<value>$MonthIdentified</value> |
|
326 |
</_nullIf> |
|
327 |
</month> |
|
328 |
<year> |
|
329 |
<_nullIf> |
|
330 |
<null>0</null> |
|
331 |
<type>float</type> |
|
332 |
<value>$YearIdentified</value> |
|
333 |
</_nullIf> |
|
334 |
</year> |
|
335 |
</_date> |
|
336 |
</1> |
|
337 |
</_alt> |
|
338 |
</value> |
|
339 |
</_dateRangeStart> |
|
340 |
</date> |
|
341 |
</_date> |
|
342 |
</determinationdate> |
|
344 | 343 |
</taxondetermination> |
345 | 344 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
346 | 345 |
</taxonoccurrence> |
inputs/NY/maps/VegBIEN.specimens.csv | ||
---|---|---|
24 | 24 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
25 | 25 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
26 | 26 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
27 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
30 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
31 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
32 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
33 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
35 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
36 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
37 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
38 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
39 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
40 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
41 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
42 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
27 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
30 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
31 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
32 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
33 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
34 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
36 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
37 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
38 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
39 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
40 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
41 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
42 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
43 | 43 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
44 | 44 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value", |
45 | 45 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value", |
inputs/UNCC/test/import.specimens.xml.ref | ||
---|---|---|
133 | 133 |
</isnative> |
134 | 134 |
<taxondetermination> |
135 | 135 |
<isoriginal>true</isoriginal> |
136 |
<iscurrent>true</iscurrent> |
|
137 | 136 |
<role>identifier</role> |
138 | 137 |
<plantconcept_id> |
139 | 138 |
<plantconcept> |
inputs/UNCC/maps/VegBIEN.specimens.csv | ||
---|---|---|
17 | 17 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
18 | 18 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
19 | 19 |
cultivated,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
20 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
21 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
22 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
23 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
24 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
25 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
20 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
21 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
22 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
23 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
24 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
25 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
26 | 26 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/1, |
27 | 27 |
collector1,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/2, |
28 | 28 |
collector2,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/3, |
inputs/ACAD/test/import.specimens.xml.ref | ||
---|---|---|
75 | 75 |
</plantobservation> |
76 | 76 |
</aggregateoccurrence> |
77 | 77 |
<taxondetermination> |
78 |
<iscurrent>true</iscurrent>
|
|
78 |
<isoriginal>true</isoriginal>
|
|
79 | 79 |
<role>identifier</role> |
80 | 80 |
<party_id> |
81 | 81 |
<party> |
... | ... | |
84 | 84 |
<surname><_namePart><last>$identifiedBy</last></_namePart></surname> |
85 | 85 |
</party> |
86 | 86 |
</party_id> |
87 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
88 |
<isoriginal>true</isoriginal> |
|
89 | 87 |
<plantconcept_id> |
90 | 88 |
<plantconcept> |
91 | 89 |
<plantname_id> |
... | ... | |
156 | 154 |
</plantname_id> |
157 | 155 |
</plantconcept> |
158 | 156 |
</plantconcept_id> |
157 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
159 | 158 |
</taxondetermination> |
160 | 159 |
<verbatimcollectorname>$recordedBy</verbatimcollectorname> |
161 | 160 |
</taxonoccurrence> |
inputs/ACAD/maps/VegBIEN.specimens.csv | ||
---|---|---|
12 | 12 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
13 | 13 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
14 | 14 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
15 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
16 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
17 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
18 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
19 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
20 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
21 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
22 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
23 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
24 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
25 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
26 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
27 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
28 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
15 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
16 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
17 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
18 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
19 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
20 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
21 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
22 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
23 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
24 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
25 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
26 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
27 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
28 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
29 | 29 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
30 | 30 |
locality,/location/locationnarrative/_merge/1, |
31 | 31 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
inputs/CVS/test/import.organisms.xml.ref | ||
---|---|---|
62 | 62 |
<sourceaccessioncode><_alt><3>$currentTaxonName sec Weakley 2006</3></_alt></sourceaccessioncode> |
63 | 63 |
<taxondetermination> |
64 | 64 |
<isoriginal>true</isoriginal> |
65 |
<iscurrent>true</iscurrent> |
|
66 | 65 |
<role>identifier</role> |
67 | 66 |
<plantconcept_id> |
68 | 67 |
<plantconcept> |
inputs/CVS/maps/VegBIEN.organisms.csv | ||
---|---|---|
10 | 10 |
obsStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_*/date, |
11 | 11 |
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
12 | 12 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3, |
13 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
13 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
14 | 14 |
authorObsCode,/location/sourceaccessioncode/_merge/2/_alt/2, |
15 | 15 |
confidentialityStatus,,** No input mapping for confidentialityStatus ** |
inputs/SALVIAS-CSV/test/import.organisms.xml.ref | ||
---|---|---|
163 | 163 |
</_alt> |
164 | 164 |
</sourceaccessioncode> |
165 | 165 |
<taxondetermination> |
166 |
<iscurrent>true</iscurrent> |
|
167 | 166 |
<role>computer</role> |
168 | 167 |
<plantconcept_id> |
169 | 168 |
<plantconcept> |
... | ... | |
218 | 217 |
</taxondetermination> |
219 | 218 |
<taxondetermination> |
220 | 219 |
<isoriginal>true</isoriginal> |
221 |
<iscurrent>true</iscurrent> |
|
222 | 220 |
<role>identifier</role> |
223 | 221 |
<plantconcept_id> |
224 | 222 |
<plantconcept> |
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
---|---|---|
34 | 34 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
35 | 35 |
individual_code,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
36 | 36 |
orig_species,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT |
37 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
38 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
|
|
39 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
|
|
40 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
41 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
42 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
43 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT
|
|
44 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT
|
|
45 |
cf_aff,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/taxonfit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
37 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
38 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
39 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
40 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
41 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
42 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
43 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT |
|
44 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT |
|
45 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
46 | 46 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
47 | 47 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
48 | 48 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
inputs/REMIB/test/import.specimens.xml.ref | ||
---|---|---|
98 | 98 |
</aggregateoccurrence> |
99 | 99 |
<taxondetermination> |
100 | 100 |
<isoriginal>true</isoriginal> |
101 |
<iscurrent>true</iscurrent> |
|
102 | 101 |
<role>identifier</role> |
103 | 102 |
<plantconcept_id> |
104 | 103 |
<plantconcept> |
inputs/REMIB/maps/VegBIEN.specimens.csv | ||
---|---|---|
9 | 9 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
10 | 10 |
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
11 | 11 |
accession_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
12 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
13 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
12 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
13 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
15 | 15 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
16 | 16 |
locality,/location/locationnarrative/_merge/1, |
17 | 17 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
inputs/SALVIAS/test/import.organisms.xml.ref | ||
---|---|---|
139 | 139 |
</_alt> |
140 | 140 |
</sourceaccessioncode> |
141 | 141 |
<taxondetermination> |
142 |
<iscurrent>true</iscurrent> |
|
143 | 142 |
<role>computer</role> |
144 | 143 |
<plantconcept_id> |
145 | 144 |
<plantconcept> |
... | ... | |
194 | 193 |
</taxondetermination> |
195 | 194 |
<taxondetermination> |
196 | 195 |
<isoriginal>true</isoriginal> |
197 |
<iscurrent>true</iscurrent> |
|
198 | 196 |
<role>identifier</role> |
199 | 197 |
<plantconcept_id> |
200 | 198 |
<plantconcept> |
inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
---|---|---|
30 | 30 |
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
31 | 31 |
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/first, |
32 | 32 |
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT |
33 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
34 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
|
|
35 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
|
|
36 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
37 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
38 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
39 |
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first",
|
|
40 |
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT
|
|
41 |
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT
|
|
42 |
cfaff,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/taxonfit","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
33 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
34 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
35 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
36 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
37 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
38 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
39 |
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/first", |
|
40 |
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT |
|
41 |
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT |
|
42 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
43 | 43 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
44 | 44 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
45 | 45 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
inputs/U/test/import.specimens.xml.ref | ||
---|---|---|
97 | 97 |
</plantobservation> |
98 | 98 |
</aggregateoccurrence> |
99 | 99 |
<taxondetermination> |
100 |
<iscurrent>true</iscurrent>
|
|
100 |
<isoriginal>true</isoriginal>
|
|
101 | 101 |
<role>identifier</role> |
102 | 102 |
<party_id> |
103 | 103 |
<party> |
... | ... | |
106 | 106 |
<surname><_namePart><last>$Detby</last></_namePart></surname> |
107 | 107 |
</party> |
108 | 108 |
</party_id> |
109 |
<determinationdate> |
|
110 |
<_date> |
|
111 |
<date> |
|
112 |
<_dateRangeStart> |
|
113 |
<value> |
|
114 |
<_alt> |
|
115 |
<1> |
|
116 |
<_date> |
|
117 |
<year> |
|
118 |
<_nullIf> |
|
119 |
<null>0</null> |
|
120 |
<type>float</type> |
|
121 |
<value>$Detyy</value> |
|
122 |
</_nullIf> |
|
123 |
</year> |
|
124 |
</_date> |
|
125 |
</1> |
|
126 |
</_alt> |
|
127 |
</value> |
|
128 |
</_dateRangeStart> |
|
129 |
</date> |
|
130 |
</_date> |
|
131 |
</determinationdate> |
|
132 |
<taxonfit>$cf</taxonfit> |
|
133 |
<isoriginal>true</isoriginal> |
|
134 | 109 |
<plantconcept_id> |
135 | 110 |
<plantconcept> |
136 | 111 |
<plantname_id> |
... | ... | |
173 | 148 |
</plantname_id> |
174 | 149 |
</plantconcept> |
175 | 150 |
</plantconcept_id> |
151 |
<determinationdate> |
|
152 |
<_date> |
|
153 |
<date> |
|
154 |
<_dateRangeStart> |
|
155 |
<value> |
|
156 |
<_alt> |
|
157 |
<1> |
|
158 |
<_date> |
|
159 |
<year> |
|
160 |
<_nullIf> |
|
161 |
<null>0</null> |
|
162 |
<type>float</type> |
|
163 |
<value>$Detyy</value> |
|
164 |
</_nullIf> |
|
165 |
</year> |
|
166 |
</_date> |
|
167 |
</1> |
|
168 |
</_alt> |
|
169 |
</value> |
|
170 |
</_dateRangeStart> |
|
171 |
</date> |
|
172 |
</_date> |
|
173 |
</determinationdate> |
|
174 |
<taxonfit>$cf</taxonfit> |
|
176 | 175 |
</taxondetermination> |
177 | 176 |
<verbatimcollectorname> |
178 | 177 |
<_merge> |
inputs/U/maps/VegBIEN.specimens.csv | ||
---|---|---|
9 | 9 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
10 | 10 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
11 | 11 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
12 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
13 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
14 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
15 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
16 |
cf,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
17 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
18 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
12 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
13 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
14 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
15 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
16 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
17 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
18 |
cf,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
19 | 19 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/1, |
20 | 20 |
Addcoll,/location/locationevent/taxonoccurrence/verbatimcollectorname/_merge/2, |
21 | 21 |
Gazetteer,"/location/locationnarrative/_merge/2/_merge/1/_label[label=""gazetteer""]/value/_merge/1", |
inputs/ARIZ/test/import.specimens.xml.ref | ||
---|---|---|
210 | 210 |
</plantobservation> |
211 | 211 |
</aggregateoccurrence> |
212 | 212 |
<taxondetermination> |
213 |
<iscurrent>true</iscurrent>
|
|
213 |
<isoriginal>true</isoriginal>
|
|
214 | 214 |
<role>identifier</role> |
215 | 215 |
<party_id> |
216 | 216 |
<party> |
... | ... | |
219 | 219 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
220 | 220 |
</party> |
221 | 221 |
</party_id> |
222 |
<determinationdate> |
|
223 |
<_date> |
|
224 |
<date> |
|
225 |
<_dateRangeStart> |
|
226 |
<value> |
|
227 |
<_alt> |
|
228 |
<1> |
|
229 |
<_date> |
|
230 |
<day> |
|
231 |
<_nullIf> |
|
232 |
<null>0</null> |
|
233 |
<type>float</type> |
|
234 |
<value>$DayIdentified</value> |
|
235 |
</_nullIf> |
|
236 |
</day> |
|
237 |
<month> |
|
238 |
<_nullIf> |
|
239 |
<null>0</null> |
|
240 |
<type>float</type> |
|
241 |
<value>$MonthIdentified</value> |
|
242 |
</_nullIf> |
|
243 |
</month> |
|
244 |
<year> |
|
245 |
<_nullIf> |
|
246 |
<null>0</null> |
|
247 |
<type>float</type> |
|
248 |
<value>$YearIdentified</value> |
|
249 |
</_nullIf> |
|
250 |
</year> |
|
251 |
</_date> |
|
252 |
</1> |
|
253 |
</_alt> |
|
254 |
</value> |
|
255 |
</_dateRangeStart> |
|
256 |
</date> |
|
257 |
</_date> |
|
258 |
</determinationdate> |
|
259 |
<notes>$Remarks</notes> |
|
260 |
<taxonfit>$IdentificationModifier</taxonfit> |
|
261 |
<isoriginal>true</isoriginal> |
|
262 | 222 |
<plantconcept_id> |
263 | 223 |
<plantconcept> |
264 | 224 |
<plantname_id> |
... | ... | |
333 | 293 |
</plantname_id> |
334 | 294 |
</plantconcept> |
335 | 295 |
</plantconcept_id> |
296 |
<determinationdate> |
|
297 |
<_date> |
|
298 |
<date> |
|
299 |
<_dateRangeStart> |
|
300 |
<value> |
|
301 |
<_alt> |
|
302 |
<1> |
|
303 |
<_date> |
|
304 |
<day> |
|
305 |
<_nullIf> |
|
306 |
<null>0</null> |
|
307 |
<type>float</type> |
|
308 |
<value>$DayIdentified</value> |
|
309 |
</_nullIf> |
|
310 |
</day> |
|
311 |
<month> |
|
312 |
<_nullIf> |
|
313 |
<null>0</null> |
|
314 |
<type>float</type> |
|
315 |
<value>$MonthIdentified</value> |
|
316 |
</_nullIf> |
|
317 |
</month> |
|
318 |
<year> |
|
319 |
<_nullIf> |
|
320 |
<null>0</null> |
|
321 |
<type>float</type> |
|
322 |
<value>$YearIdentified</value> |
|
323 |
</_nullIf> |
|
324 |
</year> |
|
325 |
</_date> |
|
326 |
</1> |
|
327 |
</_alt> |
|
328 |
</value> |
|
329 |
</_dateRangeStart> |
|
330 |
</date> |
|
331 |
</_date> |
|
332 |
</determinationdate> |
|
333 |
<notes>$Remarks</notes> |
|
334 |
<taxonfit>$IdentificationModifier</taxonfit> |
|
336 | 335 |
</taxondetermination> |
337 | 336 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
338 | 337 |
</taxonoccurrence> |
inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
---|---|---|
26 | 26 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
27 | 27 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
28 | 28 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
30 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
31 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
32 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
33 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
34 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
35 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
36 |
IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
37 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/1",Contains the binomial in addition to the authority
|
|
38 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/2",
|
|
39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
40 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
41 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
42 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
43 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
44 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
45 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
46 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
29 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
30 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
31 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
32 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/1",Contains the binomial in addition to the authority
|
|
33 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_alt/2",
|
|
34 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
35 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
36 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
37 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
38 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
39 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
40 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
41 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
42 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
43 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
44 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
45 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
46 |
IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
47 | 47 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
48 | 48 |
MaximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value", |
49 | 49 |
MinimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value", |
inputs/GBIF/test/import.specimens.xml.ref | ||
---|---|---|
148 | 148 |
</plantobservation> |
149 | 149 |
</aggregateoccurrence> |
150 | 150 |
<taxondetermination> |
151 |
<iscurrent>true</iscurrent>
|
|
151 |
<isoriginal>true</isoriginal>
|
|
152 | 152 |
<role>identifier</role> |
153 | 153 |
<party_id> |
154 | 154 |
<party> |
... | ... | |
157 | 157 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
158 | 158 |
</party> |
159 | 159 |
</party_id> |
160 |
<isoriginal>true</isoriginal> |
|
161 | 160 |
<plantconcept_id> |
162 | 161 |
<plantconcept> |
163 | 162 |
<plantname_id> |
inputs/GBIF/maps/VegBIEN.specimens.csv | ||
---|---|---|
15 | 15 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
16 | 16 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
17 | 17 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
18 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
19 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
20 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
21 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
22 |
AuthorOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
23 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
24 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
25 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
26 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
18 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
19 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
20 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
21 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
22 |
AuthorOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
23 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
24 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
25 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
26 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
27 | 27 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
28 | 28 |
Locality,/location/locationnarrative/_merge/1, |
29 | 29 |
InstitutionCD,/location/sourceaccessioncode/_alt/2/_merge/1, |
inputs/NCU-NCSC/test/import.specimens.xml.ref | ||
---|---|---|
102 | 102 |
</isnative> |
103 | 103 |
<taxondetermination> |
104 | 104 |
<isoriginal>true</isoriginal> |
105 |
<iscurrent>true</iscurrent> |
|
106 | 105 |
<role>identifier</role> |
107 | 106 |
<plantconcept_id> |
108 | 107 |
<plantconcept> |
inputs/SpeciesLink/test/import.specimens.xml.ref | ||
---|---|---|
327 | 327 |
</plantobservation> |
328 | 328 |
</aggregateoccurrence> |
329 | 329 |
<taxondetermination> |
330 |
<iscurrent>true</iscurrent>
|
|
330 |
<isoriginal>true</isoriginal>
|
|
331 | 331 |
<role>identifier</role> |
332 | 332 |
<party_id> |
333 | 333 |
<party> |
... | ... | |
366 | 366 |
</surname> |
367 | 367 |
</party> |
368 | 368 |
</party_id> |
369 |
<determinationdate> |
|
370 |
<_date> |
|
371 |
<date> |
|
372 |
<_dateRangeStart> |
|
373 |
<value> |
|
374 |
<_alt> |
|
375 |
<1> |
|
376 |
<_date> |
|
377 |
<day> |
|
378 |
<_nullIf> |
|
379 |
<null>0</null> |
|
380 |
<type>float</type> |
|
381 |
<value>$conceptual_darwin_2003_1_0_DayIdentified</value> |
|
382 |
</_nullIf> |
|
383 |
</day> |
|
384 |
<month> |
|
385 |
<_nullIf> |
|
386 |
<null>0</null> |
|
387 |
<type>float</type> |
|
388 |
<value>$conceptual_darwin_2003_1_0_MonthIdentified</value> |
|
389 |
</_nullIf> |
|
390 |
</month> |
|
391 |
<year> |
|
392 |
<_nullIf> |
|
393 |
<null>0</null> |
|
394 |
<type>float</type> |
|
395 |
<value>$conceptual_darwin_2003_1_0_YearIdentified</value> |
|
396 |
</_nullIf> |
|
397 |
</year> |
|
398 |
</_date> |
|
399 |
</1> |
|
400 |
<2>$dwc_terms_dateIdentified</2> |
|
401 |
</_alt> |
|
402 |
</value> |
|
403 |
</_dateRangeStart> |
|
404 |
</date> |
|
405 |
</_date> |
|
406 |
</determinationdate> |
|
407 |
<notes>$dwc_dwcore_Remarks</notes> |
|
408 |
<isoriginal>true</isoriginal> |
|
409 | 369 |
<plantconcept_id> |
410 | 370 |
<plantconcept> |
411 | 371 |
<plantname_id> |
... | ... | |
536 | 496 |
</plantname_id> |
537 | 497 |
</plantconcept> |
538 | 498 |
</plantconcept_id> |
499 |
<determinationdate> |
|
500 |
<_date> |
|
501 |
<date> |
|
502 |
<_dateRangeStart> |
|
503 |
<value> |
|
504 |
<_alt> |
|
505 |
<1> |
|
506 |
<_date> |
|
507 |
<day> |
|
508 |
<_nullIf> |
|
509 |
<null>0</null> |
|
510 |
<type>float</type> |
|
511 |
<value>$conceptual_darwin_2003_1_0_DayIdentified</value> |
|
512 |
</_nullIf> |
|
513 |
</day> |
|
514 |
<month> |
|
515 |
<_nullIf> |
|
516 |
<null>0</null> |
|
517 |
<type>float</type> |
|
518 |
<value>$conceptual_darwin_2003_1_0_MonthIdentified</value> |
|
519 |
</_nullIf> |
|
520 |
</month> |
|
521 |
<year> |
|
522 |
<_nullIf> |
|
523 |
<null>0</null> |
|
524 |
<type>float</type> |
|
525 |
<value>$conceptual_darwin_2003_1_0_YearIdentified</value> |
|
526 |
</_nullIf> |
|
527 |
</year> |
|
528 |
</_date> |
|
529 |
</1> |
|
530 |
<2>$dwc_terms_dateIdentified</2> |
|
531 |
</_alt> |
|
532 |
</value> |
|
533 |
</_dateRangeStart> |
|
534 |
</date> |
|
535 |
</_date> |
|
536 |
</determinationdate> |
|
537 |
<notes>$dwc_dwcore_Remarks</notes> |
|
539 | 538 |
</taxondetermination> |
540 | 539 |
<verbatimcollectorname> |
541 | 540 |
<_alt> |
inputs/MO/test/import.specimens.xml.ref | ||
---|---|---|
182 | 182 |
</plantobservation> |
183 | 183 |
</aggregateoccurrence> |
184 | 184 |
<taxondetermination> |
185 |
<iscurrent>true</iscurrent>
|
|
185 |
<isoriginal>true</isoriginal>
|
|
186 | 186 |
<role>identifier</role> |
187 | 187 |
<party_id> |
188 | 188 |
<party> |
... | ... | |
191 | 191 |
<surname><_namePart><last>$IdentifiedBy</last></_namePart></surname> |
192 | 192 |
</party> |
193 | 193 |
</party_id> |
194 |
<isoriginal>true</isoriginal> |
|
195 | 194 |
<plantconcept_id> |
196 | 195 |
<plantconcept> |
197 | 196 |
<plantname_id> |
inputs/QMOR/test/import.specimens.xml.ref | ||
---|---|---|
171 | 171 |
</plantobservation> |
172 | 172 |
</aggregateoccurrence> |
173 | 173 |
<taxondetermination> |
174 |
<iscurrent>true</iscurrent>
|
|
174 |
<isoriginal>true</isoriginal>
|
|
175 | 175 |
<role>identifier</role> |
176 | 176 |
<party_id> |
177 | 177 |
<party> |
... | ... | |
180 | 180 |
<surname><_namePart><last>$identifiedBy</last></_namePart></surname> |
181 | 181 |
</party> |
182 | 182 |
</party_id> |
183 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
184 |
<taxonfit>$identificationQualifier</taxonfit> |
|
185 |
<isoriginal>true</isoriginal> |
|
186 | 183 |
<plantconcept_id> |
187 | 184 |
<plantconcept> |
188 | 185 |
<plantname_id> |
... | ... | |
253 | 250 |
</plantname_id> |
254 | 251 |
</plantconcept> |
255 | 252 |
</plantconcept_id> |
253 |
<determinationdate><_date><date><_dateRangeStart><value><_alt><2>$dateIdentified</2></_alt></value></_dateRangeStart></date></_date></determinationdate> |
|
254 |
<taxonfit>$identificationQualifier</taxonfit> |
|
256 | 255 |
</taxondetermination> |
257 | 256 |
<verbatimcollectorname>$recordedBy</verbatimcollectorname> |
258 | 257 |
</taxonoccurrence> |
mappings/VegCSV-VegBIEN.specimens.csv | ||
---|---|---|
73 | 73 |
"occurrenceID","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1", |
74 | 74 |
"recordNumber","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2", |
75 | 75 |
"scientificName","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3", |
76 |
"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
|
|
77 |
"computer.scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
78 |
"computer.infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
|
|
79 |
"computer.specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
80 |
"computer.genus","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
81 |
"computer.family","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
82 |
"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
83 |
"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/taxonfit",
|
|
84 |
"scientificName","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
85 |
"scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
86 |
"specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
87 |
"genus","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
88 |
"family","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
89 |
"order","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
90 |
"class","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
91 |
"phylum","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
92 |
"kingdom","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
76 |
"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
77 |
"computer.scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
78 |
"computer.infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
79 |
"computer.specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
80 |
"computer.genus","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
81 |
"computer.family","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
82 |
"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
83 |
"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit", |
|
84 |
"scientificName","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
85 |
"scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
86 |
"specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
87 |
"genus","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
88 |
"family","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
89 |
"order","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
|
90 |
"class","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
|
91 |
"phylum","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
|
92 |
"kingdom","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
93 | 93 |
"recordedBy.givenName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first", |
94 | 94 |
"recordedBy.surName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last", |
95 | 95 |
"voucherType","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
mappings/DwC-VegBIEN.specimens.csv | ||
---|---|---|
93 | 93 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
94 | 94 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
95 | 95 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
96 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
97 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,
|
|
98 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
99 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,
|
|
100 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
101 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,
|
|
102 |
DateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping
|
|
103 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping
|
|
104 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
105 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
106 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
107 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
108 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
109 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
110 |
DateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
111 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
112 |
IdentifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,
|
|
113 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,
|
|
114 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
115 |
TaxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
116 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
117 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/notes,
|
|
118 |
IdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
119 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/taxonfit,
|
|
120 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
121 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
122 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
123 |
ScientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
124 |
scientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
125 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
126 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
127 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
128 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
129 |
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
130 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
131 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
132 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
133 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
134 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
135 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
136 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
137 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
138 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
139 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
140 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
141 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
142 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
143 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
144 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
145 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
96 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
97 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first,
|
|
98 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
99 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle,
|
|
100 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
101 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last,
|
|
102 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
103 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
|
|
104 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
105 |
ScientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
106 |
scientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
107 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
|
|
108 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
109 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
110 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
111 |
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",
|
|
112 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
113 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
114 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
115 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
|
|
116 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
117 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
|
|
118 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
119 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
|
|
120 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
121 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
|
|
122 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
123 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
|
|
124 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
125 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
|
|
126 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
127 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
|
|
128 |
DateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping
|
|
129 |
dateIdentified/_alt,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping
|
|
130 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
131 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
132 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
133 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
134 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
135 |
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
136 |
DateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
137 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,
|
|
138 |
IdentifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,
|
|
139 |
identifiedDate,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,
|
|
140 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
141 |
TaxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
142 |
remarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
143 |
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/notes,
|
|
144 |
IdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
145 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit,
|
|
146 | 146 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
147 | 147 |
RecordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
148 | 148 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: taxondetermination mappings: Removed iscurrent=true because it is not the role of the mappings to specify which taxondetermination is the current one. Eventually, the order of the determinations will need to be specified using a sort # or similar, and the DB will select the current one for queries to use. Ensure all mappings have :[isoriginal=true] so that they match up between DwC and VegCSV.