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Revision 3994

Added by Aaron Marcuse-Kubitza over 12 years ago

mappings/VegCSV-VegBIEN.specimens.csv: location unique keys: Map to a new parent location for the location, instead of a parent locationevent for the locationevent. This much simpler mapping (which does not require _alt or _merge) is possible now that the necessary unique indexes have been set up.

View differences:

inputs/Madidi/test/import.plots.xml.ref
2 2 
<VegBIEN>
3 3 
    <location id="-1">
4 4 
        <area>$Area</area>
5 
        <authorlocationcode><_merge><2>$Inventory name</2></_merge></authorlocationcode>
5 
        <authorlocationcode>$Inventory name</authorlocationcode>
6 6 
        <elevation>
7 7 
            <_alt>
8 8 
                <1>
......
163 163 
            </_compass>
164 164 
        </slopeaspect>
165 165 
        <slopegradient>$Slope</slopegradient>
166 
        <sourceaccessioncode>
167 
            <_alt>
168 
                <1>$Inventory code</1>
169 
                <2><_merge><2>$Inventory name</2></_merge></2>
170 
            </_alt>
171 
        </sourceaccessioncode>
166 
        <sourceaccessioncode>$Inventory code</sourceaccessioncode>
172 167 
    </location>
173 168 
</VegBIEN>
174 169 
Inserted 19 new rows into database
inputs/Madidi/maps/VegBIEN.plots.csv
1 1 
Madidi,VegBIEN:,Comments
2 2 
Area,/location/area,
3 
Inventory name,/location/authorlocationcode/_merge/2,
3 
Inventory name,/location/authorlocationcode,
4 4 
Altitude,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
5 5 
Minimum altitude,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
6 6 
Minimum altitude,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
......
38 38 
Direction,/location/slopeaspect/_compass/value/_alt/1,Part files provide either this field or Direction
39 39 
Orientación/exposicion,/location/slopeaspect/_compass/value/_alt/2,Part files provide either this field or Orientación
40 40 
Slope,/location/slopegradient,
41 
Inventory code,/location/sourceaccessioncode/_alt/1,
42 
Inventory name,/location/sourceaccessioncode/_alt/2/_merge/2,
41 
Inventory code,/location/sourceaccessioncode,
43 42 
Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
44 43 
Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS)
45 44 
Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
inputs/CVS/test/import.organisms.xml.ref
1 1 
Put template:
2 2 
<VegBIEN>
3 3 
    <location id="-1">
4 
        <authorlocationcode><_merge><2>$authorObsCode</2></_merge></authorlocationcode>
4 
        <authorlocationcode>$authorObsCode</authorlocationcode>
5 5 
        <locationdetermination>
6 6 
            <coordsaccuracy><_noCV><value><_alt><1>$locationAccuracy-m</1></_alt></value></_noCV></coordsaccuracy>
7 7 
            <latitude>
......
83 83 
                </taxondetermination>
84 84 
            </taxonoccurrence>
85 85 
        </locationevent>
86 
        <sourceaccessioncode><_alt><2><_merge><2>$authorObsCode</2></_merge></2></_alt></sourceaccessioncode>
87 86 
    </location>
88 87 
</VegBIEN>
89 88 
Inserted 17 new rows into database
inputs/CVS/maps/VegBIEN.organisms.csv
1 1 
CVS,VegBIEN:,Comments
2 
authorObsCode,/location/authorlocationcode/_merge/2,
2 
authorObsCode,/location/authorlocationcode,
3 3 
locationAccuracy-m,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
4 4 
realLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/1",
5 5 
publicLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value/_alt/2",
......
12 12 
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
13 13 
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,
14 14 
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
15 
authorObsCode,/location/sourceaccessioncode/_alt/2/_merge/2,
16 15 
confidentialityStatus,,** No input mapping for confidentialityStatus **
inputs/SALVIAS-CSV/test/import.plots.xml.ref
2 2 
<VegBIEN>
3 3 
    <location id="-1">
4 4 
        <area>$plot_area_ha</area>
5 
        <authorlocationcode><_merge><2>$plot_code</2></_merge></authorlocationcode>
5 
        <authorlocationcode>$plot_code</authorlocationcode>
6 6 
        <elevation>
7 7 
            <_alt>
8 8 
                <1>
......
281 281 
        <locationnarrative><_merge><1>$locality_description</1></_merge></locationnarrative>
282 282 
        <slopeaspect><_compass><value>$slope_aspect</value></_compass></slopeaspect>
283 283 
        <slopegradient>$slope_gradient</slopegradient>
284 
        <sourceaccessioncode>
285 
            <_alt>
286 
                <1>$PLOT_ID</1>
287 
                <2><_merge><2>$plot_code</2></_merge></2>
288 
            </_alt>
289 
        </sourceaccessioncode>
284 
        <sourceaccessioncode>$PLOT_ID</sourceaccessioncode>
290 285 
    </location>
291 286 
</VegBIEN>
292 287 
Inserted 16 new rows into database
inputs/SALVIAS-CSV/test/import.organisms.xml.ref
1 1 
Put template:
2 2 
<VegBIEN>
3 3 
    <location id="-1">
4 
        <authorlocationcode>
5 
            <_merge>
6 
                <1>$plot_code</1>
7 
                <2>$subplot</2>
8 
            </_merge>
9 
        </authorlocationcode>
4 
        <authorlocationcode>$subplot</authorlocationcode>
10 5 
        <locationevent>
11 6 
            <authoreventcode>$subplot</authoreventcode>
12 7 
            <obsstartdate><_date><date><_dateRangeStart><value><_date><year>$census_date</year></_date></value></_dateRangeStart></date></_date></obsstartdate>
13 
            <parent_id>
14 
                <locationevent>
15 
                    <location_id>
16 
                        <location>
17 
                            <sourceaccessioncode>
18 
                                <_alt>
19 
                                    <1>$PLOT_ID</1>
20 
                                    <2>$plot_code</2>
21 
                                </_alt>
22 
                            </sourceaccessioncode>
23 
                        </location>
24 
                    </location_id>
25 
                    <authoreventcode>$plot_code</authoreventcode>
26 
                    <sourceaccessioncode>$PLOT_ID</sourceaccessioncode>
27 
                </locationevent>
28 
            </parent_id>
29 8 
            <taxonoccurrence>
30 9 
                <aggregateoccurrence>
31 10 
                    <count>$no_of_individuals</count>
......
298 277 
                </voucher>
299 278 
            </taxonoccurrence>
300 279 
        </locationevent>
301 
        <sourceaccessioncode>
302 
            <_alt>
303 
                <2>
304 
                    <_merge>
305 
                        <1>
306 
                            <_alt>
307 
                                <1>$PLOT_ID</1>
308 
                                <2>$plot_code</2>
309 
                            </_alt>
310 
                        </1>
311 
                        <2>$subplot</2>
312 
                    </_merge>
313 
                </2>
314 
            </_alt>
315 
        </sourceaccessioncode>
280 
        <parent_id>
281 
            <location>
282 
                <authorlocationcode>$plot_code</authorlocationcode>
283 
                <sourceaccessioncode>$PLOT_ID</sourceaccessioncode>
284 
            </location>
285 
        </parent_id>
316 286 
    </location>
317 287 
</VegBIEN>
318 
Inserted 54 new rows into database
288 
Inserted 53 new rows into database
inputs/SALVIAS-CSV/maps/VegBIEN.plots.csv
1 1 
SALVIAS-CSV,VegBIEN:,Comments
2 2 
plot_area_ha,/location/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
3 
plot_code,/location/authorlocationcode/_merge/2,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
3 
plot_code,/location/authorlocationcode,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
4 4 
elev_m,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
5 5 
elev_max_m,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6 6 
elev_min_m,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
......
43 43 
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
44 44 
slope_aspect,/location/slopeaspect/_compass/value,
45 45 
slope_gradient,/location/slopegradient,
46 
PLOT_ID,/location/sourceaccessioncode/_alt/1,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
47 
plot_code,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
46 
PLOT_ID,/location/sourceaccessioncode,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
48 47 
observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
49 48 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv
1 1 
SALVIAS-CSV,VegBIEN:,Comments
2 
plot_code,/location/authorlocationcode/_merge/1,"Brad: Same as plotCode, above"
3 
subplot,/location/authorlocationcode/_merge/2,
2 
subplot,/location/authorlocationcode,
4 3 
subplot,/location/locationevent/authoreventcode,
5 4 
census_date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_date/year,
6 
PLOT_ID,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
7 
plot_code,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,"Brad: Same as plotCode, above"
8 
plot_code,/location/locationevent/parent_id/locationevent/authoreventcode,"Brad: Same as plotCode, above"
9 
PLOT_ID,/location/locationevent/parent_id/locationevent/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
10 5 
no_of_individuals,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
11 6 
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
12 7 
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
......
50 45 
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
51 46 
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/then/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string
52 47 
voucher_string,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/then/catalognumber_dwc/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
53 
PLOT_ID,/location/sourceaccessioncode/_alt/2/_merge/1/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
54 
plot_code,/location/sourceaccessioncode/_alt/2/_merge/1/_alt/2,"Brad: Same as plotCode, above"
55 
subplot,/location/sourceaccessioncode/_alt/2/_merge/2,
48 
plot_code,/location/parent_id/location/authorlocationcode,"Brad: Same as plotCode, above"
49 
PLOT_ID,/location/parent_id/location/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
56 50 
collector_code,,Brad: OMIT
57 51 
comments,,Brad: OMIT
58 52 
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
inputs/SALVIAS/test/import.plots.xml.ref
2 2 
<VegBIEN>
3 3 
    <location id="-1">
4 4 
        <area>$plot_area_ha</area>
5 
        <authorlocationcode><_merge><2>$SiteCode</2></_merge></authorlocationcode>
5 
        <authorlocationcode>$SiteCode</authorlocationcode>
6 6 
        <elevation>
7 7 
            <_alt>
8 8 
                <1>
......
287 287 
        <locationnarrative><_merge><1>$Locality_Description</1></_merge></locationnarrative>
288 288 
        <slopeaspect><_compass><value>$slope_aspect</value></_compass></slopeaspect>
289 289 
        <slopegradient>$slope_gradient</slopegradient>
290 
        <sourceaccessioncode>
291 
            <_alt>
292 
                <1>$PlotID</1>
293 
                <2><_merge><2>$SiteCode</2></_merge></2>
294 
            </_alt>
295 
        </sourceaccessioncode>
290 
        <sourceaccessioncode>$PlotID</sourceaccessioncode>
296 291 
    </location>
297 292 
</VegBIEN>
298 293 
Inserted 23 new rows into database
inputs/SALVIAS/test/import.organisms.xml.ref
1 1 
Put template:
2 2 
<VegBIEN>
3 3 
    <location id="-1">
4 
        <authorlocationcode>
5 
            <_merge>
6 
                <1>$PlotCode</1>
7 
                <2>$Line</2>
8 
            </_merge>
9 
        </authorlocationcode>
4 
        <authorlocationcode>$Line</authorlocationcode>
10 5 
        <locationevent>
11 6 
            <authoreventcode>$Line</authoreventcode>
12 
            <parent_id>
13 
                <locationevent>
14 
                    <location_id>
15 
                        <location>
16 
                            <sourceaccessioncode>
17 
                                <_alt>
18 
                                    <1>$PlotID</1>
19 
                                    <2>$PlotCode</2>
20 
                                </_alt>
21 
                            </sourceaccessioncode>
22 
                        </location>
23 
                    </location_id>
24 
                    <authoreventcode>$PlotCode</authoreventcode>
25 
                    <sourceaccessioncode>$PlotID</sourceaccessioncode>
26 
                </locationevent>
27 
            </parent_id>
28 7 
            <taxonoccurrence>
29 8 
                <aggregateoccurrence>
30 9 
                    <collectiondate><_date><date><_dateRangeStart><value><_date><date>$census_date</date></_date></value></_dateRangeStart></date></_date></collectiondate>
......
279 258 
                </voucher>
280 259 
            </taxonoccurrence>
281 260 
        </locationevent>
282 
        <sourceaccessioncode>
283 
            <_alt>
284 
                <2>
285 
                    <_merge>
286 
                        <1>
287 
                            <_alt>
288 
                                <1>$PlotID</1>
289 
                                <2>$PlotCode</2>
290 
                            </_alt>
291 
                        </1>
292 
                        <2>$Line</2>
293 
                    </_merge>
294 
                </2>
295 
            </_alt>
296 
        </sourceaccessioncode>
261 
        <parent_id>
262 
            <location>
263 
                <authorlocationcode>$PlotCode</authorlocationcode>
264 
                <sourceaccessioncode>$PlotID</sourceaccessioncode>
265 
            </location>
266 
        </parent_id>
297 267 
    </location>
298 268 
</VegBIEN>
299 269 
Inserted 47 new rows into database
inputs/SALVIAS/maps/VegBIEN.plots.csv
1 1 
SALVIAS,VegBIEN:,Comments
2 2 
plot_area_ha,/location/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
3 
SiteCode,/location/authorlocationcode/_merge/2,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
3 
SiteCode,/location/authorlocationcode,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
4 4 
Elev,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
5 5 
elev_max_m,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6 6 
elev_min_m,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
......
43 43 
Locality_Description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
44 44 
slope_aspect,/location/slopeaspect/_compass/value,
45 45 
slope_gradient,/location/slopegradient,
46 
PlotID,/location/sourceaccessioncode/_alt/1,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
47 
SiteCode,/location/sourceaccessioncode/_alt/2/_merge/2,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
46 
PlotID,/location/sourceaccessioncode,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
48 47 
AccessCode,,** No input mapping for AccessCode **
49 48 
ElevSource,,** No input mapping for ElevSource **
50 49 
Habitat,,** No input mapping for Habitat **
inputs/SALVIAS/maps/VegBIEN.organisms.csv
1 1 
SALVIAS,VegBIEN:,Comments
2 
PlotCode,/location/authorlocationcode/_merge/1,"Brad: Same as plotCode, above"
3 
Line,/location/authorlocationcode/_merge/2,
2 
Line,/location/authorlocationcode,
4 3 
Line,/location/locationevent/authoreventcode,
5 
PlotID,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
6 
PlotCode,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,"Brad: Same as plotCode, above"
7 
PlotCode,/location/locationevent/parent_id/locationevent/authoreventcode,"Brad: Same as plotCode, above"
8 
PlotID,/location/locationevent/parent_id/locationevent/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
9 4 
census_date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_*/date,
10 5 
NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
11 6 
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
......
47 42 
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
48 43 
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/then/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string
49 44 
SourceVoucher,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/_if[@name=""if indirect voucher""]/then/catalognumber_dwc/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
50 
PlotID,/location/sourceaccessioncode/_alt/2/_merge/1/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
51 
PlotCode,/location/sourceaccessioncode/_alt/2/_merge/1/_alt/2,"Brad: Same as plotCode, above"
52 
Line,/location/sourceaccessioncode/_alt/2/_merge/2,
45 
PlotCode,/location/parent_id/location/authorlocationcode,"Brad: Same as plotCode, above"
46 
PlotID,/location/parent_id/location/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
53 47 
GenAuth,,** No input mapping for GenAuth **
54 48 
IsMorpho,,** No input mapping for IsMorpho **
55 49 
OrigAuth,,** No input mapping for OrigAuth **
mappings/VegCSV-VegBIEN.specimens.csv
1 1 
VegCSV[DwC],VegBIEN:,Comments
2 2 
plotArea,/location/area,
3 
parentPlotName,/location/authorlocationcode/_merge/1,
4 
plotName,/location/authorlocationcode/_merge/2,
3 
plotName,/location/authorlocationcode,
5 4 
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
6 5 
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
7 6 
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
......
25 24 
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
26 25 
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value,
27 26 
plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value,
28 
parentLocationID,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,
29 
parentPlotName,/location/locationevent/parent_id/locationevent/*_id/location/sourceaccessioncode/_alt/2,
30 
parentPlotName,/location/locationevent/parent_id/locationevent/authoreventcode,
31 
parentLocationID,/location/locationevent/parent_id/locationevent/sourceaccessioncode,
32 27 
precipitation,/location/locationevent/precipitation,
33 28 
acidity,/location/locationevent/soilobs/acidity,
34 29 
baseSaturation,/location/locationevent/soilobs/basesaturation,
......
102 97 
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
103 98 
locality,/location/locationnarrative/_merge/1,
104 99 
plotNotes,/location/notespublic,
100 
parentPlotName,/location/parent_id/location/authorlocationcode,
101 
parentLocationID,/location/parent_id/location/sourceaccessioncode,
105 102 
slopeAspect,/location/slopeaspect/_compass/value,
106 103 
slopeGradient,/location/slopegradient,
107 
locationID,/location/sourceaccessioncode/_alt/1,
108 
parentLocationID,/location/sourceaccessioncode/_alt/2/_merge/1/_alt/1,
109 
parentPlotName,/location/sourceaccessioncode/_alt/2/_merge/1/_alt/2,
110 
plotName,/location/sourceaccessioncode/_alt/2/_merge/2,
104 
locationID,/location/sourceaccessioncode,
mappings/for_review/VegCSV-VegBIEN.specimens.csv
1 1 
VegCSV[DwC],VegBIEN:,Comments
2 2 
plotArea,//location/area,
3 
parentPlotName,//location/authorlocationcode,
4 3 
plotName,//location/authorlocationcode,
5 4 
verbatimElevation,//location/elevation,
6 5 
maximumElevationInMeters,//location/elevation,
......
25 24 
communityName,//commconcept/commdescription,
26 25 
plotEventEndDate,//locationevent/obsenddate/_*/date,
27 26 
plotEventStartDate,//locationevent/obsstartdate/_*/date,
28 
parentLocationID,//location/sourceaccessioncode,
29 
parentPlotName,//location/sourceaccessioncode,
30 
parentPlotName,//locationevent/authoreventcode,
31 
parentLocationID,//locationevent/sourceaccessioncode,
32 27 
precipitation,//locationevent/precipitation,
33 28 
acidity,//soilobs/acidity,
34 29 
baseSaturation,//soilobs/basesaturation,
......
102 97 
minimumDepthInMeters,//locationevent/waterdepth,
103 98 
locality,//location/locationnarrative,
104 99 
plotNotes,//location/notespublic,
100 
parentPlotName,//location/authorlocationcode,
101 
parentLocationID,//location/sourceaccessioncode,
105 102 
slopeAspect,//location/slopeaspect,
106 103 
slopeGradient,//location/slopegradient,
107 104 
locationID,//location/sourceaccessioncode,
108 
parentLocationID,//location/sourceaccessioncode,
109 
parentPlotName,//location/sourceaccessioncode,
110 
plotName,//location/sourceaccessioncode,

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