Revision 4006
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/test/import.specimens.xml.ref | ||
|---|---|---|
| 41 | 41 |
<aggregateoccurrence> |
| 42 | 42 |
<count>$individualCount</count> |
| 43 | 43 |
<plantobservation> |
| 44 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 44 | 45 |
<specimenreplicate> |
| 45 | 46 |
<collectioncode_dwc> |
| 46 | 47 |
<_alt> |
| ... | ... | |
| 69 | 70 |
<value>$establishmentMeans</value> |
| 70 | 71 |
</_map> |
| 71 | 72 |
</isnative> |
| 73 |
<sourceaccessioncode><_alt><1>$id</1></_alt></sourceaccessioncode> |
|
| 72 | 74 |
<taxondetermination> |
| 73 | 75 |
<isoriginal>true</isoriginal> |
| 74 | 76 |
<role>identifier</role> |
| inputs/MT/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 3 | 3 |
collectionCode,/location/authorlocationcode/_merge/2, |
| 4 | 4 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 5 | 5 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 6 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 6 | 7 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 7 | 8 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
| 8 | 9 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 9 | 10 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 10 | 11 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 11 | 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 13 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 12 | 14 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 13 | 15 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| 14 | 16 |
locality,/location/locationnarrative/_merge/1, |
| inputs/NY/test/import.specimens.xml.ref | ||
|---|---|---|
| 227 | 227 |
</userdefined_id> |
| 228 | 228 |
<definedvalue>$Sex</definedvalue> |
| 229 | 229 |
</definedvalue> |
| 230 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
|
| 230 | 231 |
<specimenreplicate> |
| 231 | 232 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNumber</catalognumber_dwc></else></_if> |
| 232 | 233 |
<collectioncode_dwc><_alt><1>$CollectionCode</1></_alt></collectioncode_dwc> |
| ... | ... | |
| 241 | 242 |
</specimenreplicate> |
| 242 | 243 |
</plantobservation> |
| 243 | 244 |
</aggregateoccurrence> |
| 245 |
<sourceaccessioncode><_alt><1>$UniqueNYInternalRecordNumber</1></_alt></sourceaccessioncode> |
|
| 244 | 246 |
<taxondetermination> |
| 245 | 247 |
<isoriginal>true</isoriginal> |
| 246 | 248 |
<role>identifier</role> |
| inputs/NY/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 22 | 22 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1, |
| 23 | 23 |
PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2/_label[label=""plant fungus""]/value", |
| 24 | 24 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 25 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 25 | 26 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 26 | 27 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 27 | 28 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
| 28 | 29 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
| 29 | 30 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 30 | 31 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 32 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 31 | 33 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 32 | 34 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 33 | 35 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/UNCC/test/import.specimens.xml.ref | ||
|---|---|---|
| 95 | 95 |
</_merge> |
| 96 | 96 |
</notes> |
| 97 | 97 |
<plantobservation> |
| 98 |
<sourceaccessioncode>$accession</sourceaccessioncode> |
|
| 98 | 99 |
<specimenreplicate> |
| 99 | 100 |
<collectionnumber><_alt><1>$collectno</1></_alt></collectionnumber> |
| 100 | 101 |
<institution_id><party><organizationname>$herbarium</organizationname></party></institution_id> |
| ... | ... | |
| 132 | 133 |
</value> |
| 133 | 134 |
</_map> |
| 134 | 135 |
</isnative> |
| 136 |
<sourceaccessioncode><_alt><1>$accession</1></_alt></sourceaccessioncode> |
|
| 135 | 137 |
<taxondetermination> |
| 136 | 138 |
<isoriginal>true</isoriginal> |
| 137 | 139 |
<role>identifier</role> |
| inputs/UNCC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 13 | 13 |
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/5/_label[label=""campus""]/value", |
| 14 | 14 |
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/6/_label[label=""loaned to""]/value", |
| 15 | 15 |
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/7/_label[label=""in or out""]/value", |
| 16 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 16 | 17 |
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
| 17 | 18 |
herbarium,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 18 | 19 |
accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 19 | 20 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
| 20 | 21 |
cultivated,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
| 22 |
accession,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 21 | 23 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 22 | 24 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 23 | 25 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| inputs/ACAD/test/import.specimens.xml.ref | ||
|---|---|---|
| 77 | 77 |
<aggregateoccurrence> |
| 78 | 78 |
<collectiondate><_date><date><_dateRangeStart><value><_alt><2>$eventDate</2></_alt></value></_dateRangeStart></date></_date></collectiondate> |
| 79 | 79 |
<plantobservation> |
| 80 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 80 | 81 |
<specimenreplicate> |
| 81 | 82 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$catalogNumber</catalognumber_dwc></else></_if> |
| 82 | 83 |
<collectioncode_dwc> |
| ... | ... | |
| 91 | 92 |
</specimenreplicate> |
| 92 | 93 |
</plantobservation> |
| 93 | 94 |
</aggregateoccurrence> |
| 95 |
<sourceaccessioncode><_alt><1>$id</1></_alt></sourceaccessioncode> |
|
| 94 | 96 |
<taxondetermination> |
| 95 | 97 |
<isoriginal>true</isoriginal> |
| 96 | 98 |
<role>identifier</role> |
| inputs/ACAD/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 10 | 10 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 11 | 11 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 12 | 12 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2, |
| 13 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 13 | 14 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 14 | 15 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 15 | 16 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
| 16 | 17 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
| 17 | 18 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 18 | 19 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 20 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 19 | 21 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 20 | 22 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 21 | 23 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/REMIB/test/import.specimens.xml.ref | ||
|---|---|---|
| 91 | 91 |
</_date> |
| 92 | 92 |
</collectiondate> |
| 93 | 93 |
<plantobservation> |
| 94 |
<sourceaccessioncode>$accession_number</sourceaccessioncode> |
|
| 94 | 95 |
<specimenreplicate> |
| 95 | 96 |
<collectioncode_dwc><_alt><1>$acronym</1></_alt></collectioncode_dwc> |
| 96 | 97 |
<sourceaccessioncode>$accession_number</sourceaccessioncode> |
| 97 | 98 |
</specimenreplicate> |
| 98 | 99 |
</plantobservation> |
| 99 | 100 |
</aggregateoccurrence> |
| 101 |
<sourceaccessioncode><_alt><1>$accession_number</1></_alt></sourceaccessioncode> |
|
| 100 | 102 |
<taxondetermination> |
| 101 | 103 |
<isoriginal>true</isoriginal> |
| 102 | 104 |
<role>identifier</role> |
| inputs/REMIB/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 8 | 8 |
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
| 9 | 9 |
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 10 | 10 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| 11 |
accession_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 11 | 12 |
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 12 | 13 |
accession_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 14 |
accession_number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 13 | 15 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
| 14 | 16 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
| 15 | 17 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
| inputs/U/test/import.specimens.xml.ref | ||
|---|---|---|
| 90 | 90 |
</collectiondate> |
| 91 | 91 |
<notes>$Notes</notes> |
| 92 | 92 |
<plantobservation> |
| 93 |
<sourceaccessioncode>$ID</sourceaccessioncode> |
|
| 93 | 94 |
<specimenreplicate> |
| 94 | 95 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$Barcode</catalognumber_dwc></else></_if> |
| 95 | 96 |
<collectionnumber><_alt><2>$Number</2></_alt></collectionnumber> |
| ... | ... | |
| 97 | 98 |
</specimenreplicate> |
| 98 | 99 |
</plantobservation> |
| 99 | 100 |
</aggregateoccurrence> |
| 101 |
<sourceaccessioncode><_alt><1>$ID</1></_alt></sourceaccessioncode> |
|
| 100 | 102 |
<taxondetermination> |
| 101 | 103 |
<isoriginal>true</isoriginal> |
| 102 | 104 |
<role>identifier</role> |
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 7 | 7 |
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
| 8 | 8 |
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
| 9 | 9 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 10 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 10 | 11 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 11 | 12 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
| 12 | 13 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 14 |
ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 13 | 15 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 14 | 16 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 15 | 17 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/ARIZ/test/import.specimens.xml.ref | ||
|---|---|---|
| 219 | 219 |
</userdefined_id> |
| 220 | 220 |
<definedvalue>$Sex</definedvalue> |
| 221 | 221 |
</definedvalue> |
| 222 |
<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
|
| 222 | 223 |
<specimenreplicate> |
| 223 | 224 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNumberNumeric</catalognumber_dwc></else></_if> |
| 224 | 225 |
<collectioncode_dwc><_alt><1>$CollectionCode</1></_alt></collectioncode_dwc> |
| ... | ... | |
| 233 | 234 |
</specimenreplicate> |
| 234 | 235 |
</plantobservation> |
| 235 | 236 |
</aggregateoccurrence> |
| 237 |
<sourceaccessioncode><_alt><1>$GlobalUniqueIdentifier</1></_alt></sourceaccessioncode> |
|
| 236 | 238 |
<taxondetermination> |
| 237 | 239 |
<isoriginal>true</isoriginal> |
| 238 | 240 |
<role>identifier</role> |
| inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 25 | 25 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 26 | 26 |
FieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 27 | 27 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 28 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 28 | 29 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 29 | 30 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 30 | 31 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
| 31 | 32 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
| 32 | 33 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 33 | 34 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 35 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 34 | 36 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 35 | 37 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 36 | 38 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/NCU-NCSC/test/import.specimens.xml.ref | ||
|---|---|---|
| 81 | 81 |
<aggregateoccurrence> |
| 82 | 82 |
<collectiondate><_date><date><_dateRangeStart><value><_alt><3>$Collect Date</3></_alt></value></_dateRangeStart></date></_date></collectiondate> |
| 83 | 83 |
<plantobservation> |
| 84 |
<sourceaccessioncode>$Accession Number</sourceaccessioncode> |
|
| 84 | 85 |
<specimenreplicate> |
| 85 | 86 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$Barcode</catalognumber_dwc></else></_if> |
| 86 | 87 |
<collectioncode_dwc><_alt><1>$SeriesName</1></_alt></collectioncode_dwc> |
| ... | ... | |
| 116 | 117 |
</value> |
| 117 | 118 |
</_map> |
| 118 | 119 |
</isnative> |
| 120 |
<sourceaccessioncode><_alt><1>$Accession Number</1></_alt></sourceaccessioncode> |
|
| 119 | 121 |
<taxondetermination> |
| 120 | 122 |
<isoriginal>true</isoriginal> |
| 121 | 123 |
<role>identifier</role> |
| inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 9 | 9 |
State,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 10 | 10 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 11 | 11 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/3, |
| 12 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 12 | 13 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 13 | 14 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 14 | 15 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 15 | 16 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
| 16 | 17 |
Cultivated?,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
| 18 |
Accession Number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 17 | 19 |
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 18 | 20 |
Accession Number,/location/sourceaccessioncode/_alt/1, |
| 19 | 21 |
Alt E/W,,** No input mapping for Alt E/W ** |
| inputs/SpeciesLink/test/import.specimens.xml.ref | ||
|---|---|---|
| 318 | 318 |
</_alt> |
| 319 | 319 |
</definedvalue> |
| 320 | 320 |
</definedvalue> |
| 321 |
<sourceaccessioncode>$dwc_dwcore_GlobalUniqueIdentifier</sourceaccessioncode> |
|
| 321 | 322 |
<specimenreplicate> |
| 322 | 323 |
<_if name="if indirect voucher"> |
| 323 | 324 |
<else> |
| ... | ... | |
| 368 | 369 |
</specimenreplicate> |
| 369 | 370 |
</plantobservation> |
| 370 | 371 |
</aggregateoccurrence> |
| 372 |
<sourceaccessioncode><_alt><1>$dwc_dwcore_GlobalUniqueIdentifier</1></_alt></sourceaccessioncode> |
|
| 371 | 373 |
<taxondetermination> |
| 372 | 374 |
<isoriginal>true</isoriginal> |
| 373 | 375 |
<role>identifier</role> |
| inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 52 | 52 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 53 | 53 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 54 | 54 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 55 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 55 | 56 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 56 | 57 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 57 | 58 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| ... | ... | |
| 62 | 63 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 63 | 64 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 64 | 65 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 66 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 65 | 67 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 66 | 68 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 67 | 69 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| inputs/QMOR/test/import.specimens.xml.ref | ||
|---|---|---|
| 182 | 182 |
</userdefined_id> |
| 183 | 183 |
<definedvalue>$sex</definedvalue> |
| 184 | 184 |
</definedvalue> |
| 185 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 185 | 186 |
<specimenreplicate> |
| 186 | 187 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$catalogNumber</catalognumber_dwc></else></_if> |
| 187 | 188 |
<collectioncode_dwc> |
| ... | ... | |
| 195 | 196 |
</specimenreplicate> |
| 196 | 197 |
</plantobservation> |
| 197 | 198 |
</aggregateoccurrence> |
| 199 |
<sourceaccessioncode><_alt><1>$id</1></_alt></sourceaccessioncode> |
|
| 198 | 200 |
<taxondetermination> |
| 199 | 201 |
<isoriginal>true</isoriginal> |
| 200 | 202 |
<role>identifier</role> |
| inputs/QMOR/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 22 | 22 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2, |
| 23 | 23 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 24 | 24 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 25 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 25 | 26 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 26 | 27 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 27 | 28 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
| 28 | 29 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 29 | 30 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 31 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 30 | 32 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 31 | 33 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 32 | 34 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 25 | 25 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 26 | 26 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 27 | 27 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 28 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 28 | 29 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 29 | 30 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 30 | 31 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
| ... | ... | |
| 33 | 34 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 34 | 35 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 35 | 36 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 37 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 36 | 38 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 37 | 39 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 38 | 40 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 25 | 25 |
individualCount,//aggregateoccurrence/count, |
| 26 | 26 |
fieldNotes,//aggregateoccurrence/notes, |
| 27 | 27 |
sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 28 |
occurrenceID,//plantobservation/sourceaccessioncode, |
|
| 28 | 29 |
catalogNumber,"//plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 29 | 30 |
collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 30 | 31 |
collectionID,//specimenreplicate/collectioncode_dwc, |
| ... | ... | |
| 33 | 34 |
occurrenceID,//specimenreplicate/sourceaccessioncode, |
| 34 | 35 |
establishmentMeans,//taxonoccurrence/iscultivated, |
| 35 | 36 |
establishmentMeans,//taxonoccurrence/isnative, |
| 37 |
occurrenceID,//taxonoccurrence/sourceaccessioncode, |
|
| 36 | 38 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname, |
| 37 | 39 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename, |
| 38 | 40 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname, |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 83 | 83 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 84 | 84 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 85 | 85 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 86 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 87 |
Id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 88 |
OccurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 89 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 90 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 91 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 86 | 92 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 87 | 93 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 88 | 94 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| ... | ... | |
| 105 | 111 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 106 | 112 |
EstablishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 107 | 113 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 114 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 115 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 116 |
OccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 117 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 118 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 119 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 108 | 120 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 109 | 121 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 110 | 122 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 41 | 41 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 42 | 42 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 43 | 43 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 44 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 45 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 46 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 44 | 47 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 45 | 48 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 46 | 49 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
| ... | ... | |
| 52 | 55 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 53 | 56 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 54 | 57 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 58 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 59 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 60 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 55 | 61 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 56 | 62 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 57 | 63 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: occurrenceID: Added VegCSV mappings for it