Revision 4018
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/QMOR/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 19 | 19 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 20 | 20 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 21 | 21 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 22 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2,
|
|
| 22 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
|
| 23 | 23 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 24 | 24 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| 25 | 25 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 21 | 21 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 22 | 22 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 23 | 23 |
fieldNumber,/location/locationevent/authoreventcode, |
| 24 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value,
|
|
| 24 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date, |
|
| 25 | 25 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 26 | 26 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 27 | 27 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode, |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 31 | 31 |
continentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 32 | 32 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 33 | 33 |
fieldNumber,/location/locationevent/authoreventcode, |
| 34 |
eventDate/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping
|
|
| 35 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 36 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 37 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 38 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2,
|
|
| 39 |
collectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/3,
|
|
| 34 |
eventDate/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping |
|
| 35 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 36 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 37 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 38 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
|
| 39 |
collectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
|
| 40 | 40 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 41 | 41 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 42 | 42 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| inputs/XAL/test/import.specimens.xml.ref | ||
|---|---|---|
| 156 | 156 |
<collectiondate> |
| 157 | 157 |
<_date> |
| 158 | 158 |
<date> |
| 159 |
<_dateRangeStart> |
|
| 160 |
<value> |
|
| 161 |
<_alt> |
|
| 162 |
<1> |
|
| 163 |
<_date> |
|
| 164 |
<day> |
|
| 165 |
<_nullIf> |
|
| 166 |
<null>0</null> |
|
| 167 |
<type>float</type> |
|
| 168 |
<value>$DayCollected</value> |
|
| 169 |
</_nullIf> |
|
| 170 |
</day> |
|
| 171 |
<month> |
|
| 172 |
<_nullIf> |
|
| 173 |
<null>0</null> |
|
| 174 |
<type>float</type> |
|
| 175 |
<value>$MonthCollected</value> |
|
| 176 |
</_nullIf> |
|
| 177 |
</month> |
|
| 178 |
<year> |
|
| 179 |
<_nullIf> |
|
| 180 |
<null>0</null> |
|
| 181 |
<type>float</type> |
|
| 182 |
<value>$YearCollected</value> |
|
| 183 |
</_nullIf> |
|
| 184 |
</year> |
|
| 185 |
</_date> |
|
| 186 |
</1> |
|
| 187 |
</_alt> |
|
| 188 |
</value> |
|
| 189 |
</_dateRangeStart> |
|
| 159 |
<_alt> |
|
| 160 |
<1> |
|
| 161 |
<_date> |
|
| 162 |
<day> |
|
| 163 |
<_nullIf> |
|
| 164 |
<null>0</null> |
|
| 165 |
<type>float</type> |
|
| 166 |
<value>$DayCollected</value> |
|
| 167 |
</_nullIf> |
|
| 168 |
</day> |
|
| 169 |
<month> |
|
| 170 |
<_nullIf> |
|
| 171 |
<null>0</null> |
|
| 172 |
<type>float</type> |
|
| 173 |
<value>$MonthCollected</value> |
|
| 174 |
</_nullIf> |
|
| 175 |
</month> |
|
| 176 |
<year> |
|
| 177 |
<_nullIf> |
|
| 178 |
<null>0</null> |
|
| 179 |
<type>float</type> |
|
| 180 |
<value>$YearCollected</value> |
|
| 181 |
</_nullIf> |
|
| 182 |
</year> |
|
| 183 |
</_date> |
|
| 184 |
</1> |
|
| 185 |
</_alt> |
|
| 190 | 186 |
</date> |
| 191 | 187 |
</_date> |
| 192 | 188 |
</collectiondate> |
| inputs/XAL/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 15 | 15 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 16 | 16 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 17 | 17 |
FieldNumber,/location/locationevent/authoreventcode, |
| 18 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 19 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 20 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 18 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 19 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 20 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 21 | 21 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 22 | 22 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 23 | 23 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/1, |
| inputs/NY/test/import.specimens.xml.ref | ||
|---|---|---|
| 171 | 171 |
<collectiondate> |
| 172 | 172 |
<_date> |
| 173 | 173 |
<date> |
| 174 |
<_dateRangeStart> |
|
| 175 |
<value> |
|
| 176 |
<_alt> |
|
| 177 |
<1> |
|
| 178 |
<_date> |
|
| 179 |
<day> |
|
| 180 |
<_nullIf> |
|
| 181 |
<null>0</null> |
|
| 182 |
<type>float</type> |
|
| 183 |
<value>$DayCollected</value> |
|
| 184 |
</_nullIf> |
|
| 185 |
</day> |
|
| 186 |
<month> |
|
| 187 |
<_nullIf> |
|
| 188 |
<null>0</null> |
|
| 189 |
<type>float</type> |
|
| 190 |
<value>$MonthCollected</value> |
|
| 191 |
</_nullIf> |
|
| 192 |
</month> |
|
| 193 |
<year> |
|
| 194 |
<_nullIf> |
|
| 195 |
<null>0</null> |
|
| 196 |
<type>float</type> |
|
| 197 |
<value>$YearCollected</value> |
|
| 198 |
</_nullIf> |
|
| 199 |
</year> |
|
| 200 |
</_date> |
|
| 201 |
</1> |
|
| 202 |
</_alt> |
|
| 203 |
</value> |
|
| 204 |
</_dateRangeStart> |
|
| 174 |
<_alt> |
|
| 175 |
<1> |
|
| 176 |
<_date> |
|
| 177 |
<day> |
|
| 178 |
<_nullIf> |
|
| 179 |
<null>0</null> |
|
| 180 |
<type>float</type> |
|
| 181 |
<value>$DayCollected</value> |
|
| 182 |
</_nullIf> |
|
| 183 |
</day> |
|
| 184 |
<month> |
|
| 185 |
<_nullIf> |
|
| 186 |
<null>0</null> |
|
| 187 |
<type>float</type> |
|
| 188 |
<value>$MonthCollected</value> |
|
| 189 |
</_nullIf> |
|
| 190 |
</month> |
|
| 191 |
<year> |
|
| 192 |
<_nullIf> |
|
| 193 |
<null>0</null> |
|
| 194 |
<type>float</type> |
|
| 195 |
<value>$YearCollected</value> |
|
| 196 |
</_nullIf> |
|
| 197 |
</year> |
|
| 198 |
</_date> |
|
| 199 |
</1> |
|
| 200 |
</_alt> |
|
| 205 | 201 |
</date> |
| 206 | 202 |
</_date> |
| 207 | 203 |
</collectiondate> |
| inputs/NY/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 15 | 15 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 16 | 16 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 17 | 17 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 18 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 19 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 20 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 18 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 19 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 20 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 21 | 21 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 22 | 22 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1, |
| 23 | 23 |
PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2/_label[label=""plant fungus""]/value", |
| inputs/UNCC/test/import.specimens.xml.ref | ||
|---|---|---|
| 34 | 34 |
<collectiondate> |
| 35 | 35 |
<_date> |
| 36 | 36 |
<date> |
| 37 |
<_dateRangeStart> |
|
| 38 |
<value> |
|
| 39 |
<_alt> |
|
| 40 |
<1> |
|
| 41 |
<_date> |
|
| 42 |
<day> |
|
| 43 |
<_nullIf> |
|
| 44 |
<null>0</null> |
|
| 45 |
<type>float</type> |
|
| 46 |
<value>$collday</value> |
|
| 47 |
</_nullIf> |
|
| 48 |
</day> |
|
| 49 |
<month> |
|
| 50 |
<_nullIf> |
|
| 51 |
<null>0</null> |
|
| 52 |
<type>float</type> |
|
| 53 |
<value>$collmonth</value> |
|
| 54 |
</_nullIf> |
|
| 55 |
</month> |
|
| 56 |
<year> |
|
| 57 |
<_nullIf> |
|
| 58 |
<null>0</null> |
|
| 59 |
<type>float</type> |
|
| 60 |
<value>$collyear</value> |
|
| 61 |
</_nullIf> |
|
| 62 |
</year> |
|
| 63 |
</_date> |
|
| 64 |
</1> |
|
| 65 |
</_alt> |
|
| 66 |
</value> |
|
| 67 |
</_dateRangeStart> |
|
| 37 |
<_alt> |
|
| 38 |
<1> |
|
| 39 |
<_date> |
|
| 40 |
<day> |
|
| 41 |
<_nullIf> |
|
| 42 |
<null>0</null> |
|
| 43 |
<type>float</type> |
|
| 44 |
<value>$collday</value> |
|
| 45 |
</_nullIf> |
|
| 46 |
</day> |
|
| 47 |
<month> |
|
| 48 |
<_nullIf> |
|
| 49 |
<null>0</null> |
|
| 50 |
<type>float</type> |
|
| 51 |
<value>$collmonth</value> |
|
| 52 |
</_nullIf> |
|
| 53 |
</month> |
|
| 54 |
<year> |
|
| 55 |
<_nullIf> |
|
| 56 |
<null>0</null> |
|
| 57 |
<type>float</type> |
|
| 58 |
<value>$collyear</value> |
|
| 59 |
</_nullIf> |
|
| 60 |
</year> |
|
| 61 |
</_date> |
|
| 62 |
</1> |
|
| 63 |
</_alt> |
|
| 68 | 64 |
</date> |
| 69 | 65 |
</_date> |
| 70 | 66 |
</collectiondate> |
| inputs/UNCC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 3 | 3 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 4 | 4 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 5 | 5 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 6 |
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 7 |
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 8 |
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 6 |
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 7 |
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 8 |
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 9 | 9 |
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1, |
| 10 | 10 |
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2, |
| 11 | 11 |
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/3, |
| inputs/ACAD/test/import.specimens.xml.ref | ||
|---|---|---|
| 75 | 75 |
<locationevent> |
| 76 | 76 |
<taxonoccurrence> |
| 77 | 77 |
<aggregateoccurrence> |
| 78 |
<collectiondate><_date><date><_dateRangeStart><value><_alt><2>$eventDate</2></_alt></value></_dateRangeStart></date></_date></collectiondate>
|
|
| 78 |
<collectiondate><_date><date><_alt><2>$eventDate</2></_alt></date></_date></collectiondate>
|
|
| 79 | 79 |
<plantobservation> |
| 80 | 80 |
<authorplantcode><_alt><2>$recordNumber</2></_alt></authorplantcode> |
| 81 | 81 |
<sourceaccessioncode>$id</sourceaccessioncode> |
| inputs/ACAD/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 9 | 9 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 10 | 10 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 11 | 11 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 12 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2,
|
|
| 12 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
|
| 13 | 13 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/2, |
| 14 | 14 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 15 | 15 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| inputs/REMIB/test/import.specimens.xml.ref | ||
|---|---|---|
| 56 | 56 |
<collectiondate> |
| 57 | 57 |
<_date> |
| 58 | 58 |
<date> |
| 59 |
<_dateRangeStart> |
|
| 60 |
<value> |
|
| 61 |
<_alt> |
|
| 62 |
<1> |
|
| 63 |
<_date> |
|
| 64 |
<day> |
|
| 65 |
<_nullIf> |
|
| 66 |
<null>0</null> |
|
| 67 |
<type>float</type> |
|
| 68 |
<value>$coll_day</value> |
|
| 69 |
</_nullIf> |
|
| 70 |
</day> |
|
| 71 |
<month> |
|
| 72 |
<_nullIf> |
|
| 73 |
<null>0</null> |
|
| 74 |
<type>float</type> |
|
| 75 |
<value>$coll_month</value> |
|
| 76 |
</_nullIf> |
|
| 77 |
</month> |
|
| 78 |
<year> |
|
| 79 |
<_nullIf> |
|
| 80 |
<null>0</null> |
|
| 81 |
<type>float</type> |
|
| 82 |
<value>$coll_year</value> |
|
| 83 |
</_nullIf> |
|
| 84 |
</year> |
|
| 85 |
</_date> |
|
| 86 |
</1> |
|
| 87 |
</_alt> |
|
| 88 |
</value> |
|
| 89 |
</_dateRangeStart> |
|
| 59 |
<_alt> |
|
| 60 |
<1> |
|
| 61 |
<_date> |
|
| 62 |
<day> |
|
| 63 |
<_nullIf> |
|
| 64 |
<null>0</null> |
|
| 65 |
<type>float</type> |
|
| 66 |
<value>$coll_day</value> |
|
| 67 |
</_nullIf> |
|
| 68 |
</day> |
|
| 69 |
<month> |
|
| 70 |
<_nullIf> |
|
| 71 |
<null>0</null> |
|
| 72 |
<type>float</type> |
|
| 73 |
<value>$coll_month</value> |
|
| 74 |
</_nullIf> |
|
| 75 |
</month> |
|
| 76 |
<year> |
|
| 77 |
<_nullIf> |
|
| 78 |
<null>0</null> |
|
| 79 |
<type>float</type> |
|
| 80 |
<value>$coll_year</value> |
|
| 81 |
</_nullIf> |
|
| 82 |
</year> |
|
| 83 |
</_date> |
|
| 84 |
</1> |
|
| 85 |
</_alt> |
|
| 90 | 86 |
</date> |
| 91 | 87 |
</_date> |
| 92 | 88 |
</collectiondate> |
| inputs/REMIB/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 5 | 5 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 6 | 6 |
state,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 7 | 7 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 8 |
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 9 |
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 10 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 8 |
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 9 |
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 10 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 11 | 11 |
accession_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 12 | 12 |
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 13 | 13 |
accession_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| inputs/SALVIAS/test/import.organisms.xml.ref | ||
|---|---|---|
| 5 | 5 |
<locationevent> |
| 6 | 6 |
<taxonoccurrence> |
| 7 | 7 |
<aggregateoccurrence> |
| 8 |
<collectiondate><_date><date><_dateRangeStart><value>$census_date</value></_dateRangeStart></date></_date></collectiondate>
|
|
| 8 |
<collectiondate><_date><date>$census_date</date></_date></collectiondate>
|
|
| 9 | 9 |
<count>$NoInd</count> |
| 10 | 10 |
<cover>$cover_percent</cover> |
| 11 | 11 |
<definedvalue fkey="tablerecord_id"> |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 1 | 1 |
SALVIAS,VegBIEN:,Comments |
| 2 | 2 |
Line,/location/authorlocationcode/_alt/1, |
| 3 |
census_date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
|
|
| 3 |
census_date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows: |
|
| 4 | 4 |
----- |
| 5 | 5 |
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count |
| 6 | 6 |
FROM ""SALVIAS"".organisms |
| inputs/U/test/import.specimens.xml.ref | ||
|---|---|---|
| 54 | 54 |
<collectiondate> |
| 55 | 55 |
<_date> |
| 56 | 56 |
<date> |
| 57 |
<_dateRangeStart> |
|
| 58 |
<value> |
|
| 59 |
<_alt> |
|
| 60 |
<1> |
|
| 61 |
<_date> |
|
| 62 |
<day> |
|
| 63 |
<_nullIf> |
|
| 64 |
<null>0</null> |
|
| 65 |
<type>float</type> |
|
| 66 |
<value>$Colldd</value> |
|
| 67 |
</_nullIf> |
|
| 68 |
</day> |
|
| 69 |
<month> |
|
| 70 |
<_nullIf> |
|
| 71 |
<null>0</null> |
|
| 72 |
<type>float</type> |
|
| 73 |
<value>$Collmm</value> |
|
| 74 |
</_nullIf> |
|
| 75 |
</month> |
|
| 76 |
<year> |
|
| 77 |
<_nullIf> |
|
| 78 |
<null>0</null> |
|
| 79 |
<type>float</type> |
|
| 80 |
<value>$Collyy</value> |
|
| 81 |
</_nullIf> |
|
| 82 |
</year> |
|
| 83 |
</_date> |
|
| 84 |
</1> |
|
| 85 |
</_alt> |
|
| 86 |
</value> |
|
| 87 |
</_dateRangeStart> |
|
| 57 |
<_alt> |
|
| 58 |
<1> |
|
| 59 |
<_date> |
|
| 60 |
<day> |
|
| 61 |
<_nullIf> |
|
| 62 |
<null>0</null> |
|
| 63 |
<type>float</type> |
|
| 64 |
<value>$Colldd</value> |
|
| 65 |
</_nullIf> |
|
| 66 |
</day> |
|
| 67 |
<month> |
|
| 68 |
<_nullIf> |
|
| 69 |
<null>0</null> |
|
| 70 |
<type>float</type> |
|
| 71 |
<value>$Collmm</value> |
|
| 72 |
</_nullIf> |
|
| 73 |
</month> |
|
| 74 |
<year> |
|
| 75 |
<_nullIf> |
|
| 76 |
<null>0</null> |
|
| 77 |
<type>float</type> |
|
| 78 |
<value>$Collyy</value> |
|
| 79 |
</_nullIf> |
|
| 80 |
</year> |
|
| 81 |
</_date> |
|
| 82 |
</1> |
|
| 83 |
</_alt> |
|
| 88 | 84 |
</date> |
| 89 | 85 |
</_date> |
| 90 | 86 |
</collectiondate> |
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 3 | 3 |
Lat,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 4 | 4 |
Long,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
| 5 | 5 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 6 |
Colldd,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 7 |
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 8 |
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 6 |
Colldd,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 7 |
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 8 |
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 9 | 9 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 10 | 10 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/2, |
| 11 | 11 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| inputs/ARIZ/test/import.specimens.xml.ref | ||
|---|---|---|
| 176 | 176 |
<collectiondate> |
| 177 | 177 |
<_date> |
| 178 | 178 |
<date> |
| 179 |
<_dateRangeStart> |
|
| 180 |
<value> |
|
| 181 |
<_alt> |
|
| 182 |
<0>$VerbatimCollectingDate</0> |
|
| 183 |
<1> |
|
| 184 |
<_date> |
|
| 185 |
<day> |
|
| 186 |
<_nullIf> |
|
| 187 |
<null>0</null> |
|
| 188 |
<type>float</type> |
|
| 189 |
<value>$DayCollected</value> |
|
| 190 |
</_nullIf> |
|
| 191 |
</day> |
|
| 192 |
<month> |
|
| 193 |
<_nullIf> |
|
| 194 |
<null>0</null> |
|
| 195 |
<type>float</type> |
|
| 196 |
<value>$MonthCollected</value> |
|
| 197 |
</_nullIf> |
|
| 198 |
</month> |
|
| 199 |
<year> |
|
| 200 |
<_nullIf> |
|
| 201 |
<null>0</null> |
|
| 202 |
<type>float</type> |
|
| 203 |
<value>$YearCollected</value> |
|
| 204 |
</_nullIf> |
|
| 205 |
</year> |
|
| 206 |
</_date> |
|
| 207 |
</1> |
|
| 208 |
</_alt> |
|
| 209 |
</value> |
|
| 210 |
</_dateRangeStart> |
|
| 179 |
<_alt> |
|
| 180 |
<0>$VerbatimCollectingDate</0> |
|
| 181 |
<1> |
|
| 182 |
<_date> |
|
| 183 |
<day> |
|
| 184 |
<_nullIf> |
|
| 185 |
<null>0</null> |
|
| 186 |
<type>float</type> |
|
| 187 |
<value>$DayCollected</value> |
|
| 188 |
</_nullIf> |
|
| 189 |
</day> |
|
| 190 |
<month> |
|
| 191 |
<_nullIf> |
|
| 192 |
<null>0</null> |
|
| 193 |
<type>float</type> |
|
| 194 |
<value>$MonthCollected</value> |
|
| 195 |
</_nullIf> |
|
| 196 |
</month> |
|
| 197 |
<year> |
|
| 198 |
<_nullIf> |
|
| 199 |
<null>0</null> |
|
| 200 |
<type>float</type> |
|
| 201 |
<value>$YearCollected</value> |
|
| 202 |
</_nullIf> |
|
| 203 |
</year> |
|
| 204 |
</_date> |
|
| 205 |
</1> |
|
| 206 |
</_alt> |
|
| 211 | 207 |
</date> |
| 212 | 208 |
</_date> |
| 213 | 209 |
</collectiondate> |
| inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 18 | 18 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 19 | 19 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 20 | 20 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 21 |
VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/0,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping
|
|
| 22 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 23 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 24 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 21 |
VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/0,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping |
|
| 22 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 23 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 24 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 25 | 25 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 26 | 26 |
FieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 27 | 27 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/1, |
| inputs/GBIF/test/import.specimens.xml.ref | ||
|---|---|---|
| 159 | 159 |
<locationevent> |
| 160 | 160 |
<taxonoccurrence> |
| 161 | 161 |
<aggregateoccurrence> |
| 162 |
<collectiondate><_date><date><_dateRangeStart><value><_alt><2>$LatestDateCollected</2></_alt></value></_dateRangeStart></date></_date></collectiondate>
|
|
| 162 |
<collectiondate><_date><date><_alt><2>$LatestDateCollected</2></_alt></date></_date></collectiondate>
|
|
| 163 | 163 |
<plantobservation> |
| 164 | 164 |
<specimenreplicate> |
| 165 | 165 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNO</catalognumber_dwc></else></_if> |
| inputs/GBIF/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 14 | 14 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 15 | 15 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 16 | 16 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 17 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2,
|
|
| 17 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
|
| 18 | 18 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 19 | 19 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 20 | 20 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| inputs/NCU-NCSC/test/import.specimens.xml.ref | ||
|---|---|---|
| 79 | 79 |
<locationevent> |
| 80 | 80 |
<taxonoccurrence> |
| 81 | 81 |
<aggregateoccurrence> |
| 82 |
<collectiondate><_date><date><_dateRangeStart><value><_alt><3>$Collect Date</3></_alt></value></_dateRangeStart></date></_date></collectiondate>
|
|
| 82 |
<collectiondate><_date><date><_alt><3>$Collect Date</3></_alt></date></_date></collectiondate>
|
|
| 83 | 83 |
<plantobservation> |
| 84 | 84 |
<sourceaccessioncode>$Accession Number</sourceaccessioncode> |
| 85 | 85 |
<specimenreplicate> |
| inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 8 | 8 |
County,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
| 9 | 9 |
State,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 10 | 10 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 11 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/3,
|
|
| 11 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
|
| 12 | 12 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
| 13 | 13 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 14 | 14 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| inputs/SpeciesLink/test/import.specimens.xml.ref | ||
|---|---|---|
| 280 | 280 |
<collectiondate> |
| 281 | 281 |
<_date> |
| 282 | 282 |
<date> |
| 283 |
<_dateRangeStart> |
|
| 284 |
<value> |
|
| 285 |
<_alt> |
|
| 286 |
<1> |
|
| 287 |
<_date> |
|
| 288 |
<day> |
|
| 289 |
<_nullIf> |
|
| 290 |
<null>0</null> |
|
| 291 |
<type>float</type> |
|
| 292 |
<value>$conceptual_darwin_2003_1_0_DayCollected</value> |
|
| 293 |
</_nullIf> |
|
| 294 |
</day> |
|
| 295 |
<month> |
|
| 296 |
<_nullIf> |
|
| 297 |
<null>0</null> |
|
| 298 |
<type>float</type> |
|
| 299 |
<value>$conceptual_darwin_2003_1_0_MonthCollected</value> |
|
| 300 |
</_nullIf> |
|
| 301 |
</month> |
|
| 302 |
<year> |
|
| 303 |
<_nullIf> |
|
| 304 |
<null>0</null> |
|
| 305 |
<type>float</type> |
|
| 306 |
<value>$conceptual_darwin_2003_1_0_YearCollected</value> |
|
| 307 |
</_nullIf> |
|
| 308 |
</year> |
|
| 309 |
</_date> |
|
| 310 |
</1> |
|
| 311 |
</_alt> |
|
| 312 |
</value> |
|
| 313 |
</_dateRangeStart> |
|
| 283 |
<_alt> |
|
| 284 |
<1> |
|
| 285 |
<_date> |
|
| 286 |
<day> |
|
| 287 |
<_nullIf> |
|
| 288 |
<null>0</null> |
|
| 289 |
<type>float</type> |
|
| 290 |
<value>$conceptual_darwin_2003_1_0_DayCollected</value> |
|
| 291 |
</_nullIf> |
|
| 292 |
</day> |
|
| 293 |
<month> |
|
| 294 |
<_nullIf> |
|
| 295 |
<null>0</null> |
|
| 296 |
<type>float</type> |
|
| 297 |
<value>$conceptual_darwin_2003_1_0_MonthCollected</value> |
|
| 298 |
</_nullIf> |
|
| 299 |
</month> |
|
| 300 |
<year> |
|
| 301 |
<_nullIf> |
|
| 302 |
<null>0</null> |
|
| 303 |
<type>float</type> |
|
| 304 |
<value>$conceptual_darwin_2003_1_0_YearCollected</value> |
|
| 305 |
</_nullIf> |
|
| 306 |
</year> |
|
| 307 |
</_date> |
|
| 308 |
</1> |
|
| 309 |
</_alt> |
|
| 314 | 310 |
</date> |
| 315 | 311 |
</_date> |
| 316 | 312 |
</collectiondate> |
| inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 44 | 44 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 45 | 45 |
FieldNumber,/location/locationevent/authoreventcode, |
| 46 | 46 |
fieldNumber,/location/locationevent/authoreventcode, |
| 47 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 48 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 49 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 47 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 48 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 49 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 50 | 50 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 51 | 51 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 52 | 52 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| inputs/MO/test/import.specimens.xml.ref | ||
|---|---|---|
| 154 | 154 |
<collectiondate> |
| 155 | 155 |
<_date> |
| 156 | 156 |
<date> |
| 157 |
<_dateRangeStart> |
|
| 158 |
<value> |
|
| 159 |
<_alt> |
|
| 160 |
<1> |
|
| 161 |
<_date> |
|
| 162 |
<day> |
|
| 163 |
<_nullIf> |
|
| 164 |
<null>0</null> |
|
| 165 |
<type>float</type> |
|
| 166 |
<value>$DayCollected</value> |
|
| 167 |
</_nullIf> |
|
| 168 |
</day> |
|
| 169 |
<month> |
|
| 170 |
<_nullIf> |
|
| 171 |
<null>0</null> |
|
| 172 |
<type>float</type> |
|
| 173 |
<value>$MonthCollected</value> |
|
| 174 |
</_nullIf> |
|
| 175 |
</month> |
|
| 176 |
<year> |
|
| 177 |
<_nullIf> |
|
| 178 |
<null>0</null> |
|
| 179 |
<type>float</type> |
|
| 180 |
<value>$YearCollected</value> |
|
| 181 |
</_nullIf> |
|
| 182 |
</year> |
|
| 183 |
</_date> |
|
| 184 |
</1> |
|
| 185 |
</_alt> |
|
| 186 |
</value> |
|
| 187 |
</_dateRangeStart> |
|
| 157 |
<_alt> |
|
| 158 |
<1> |
|
| 159 |
<_date> |
|
| 160 |
<day> |
|
| 161 |
<_nullIf> |
|
| 162 |
<null>0</null> |
|
| 163 |
<type>float</type> |
|
| 164 |
<value>$DayCollected</value> |
|
| 165 |
</_nullIf> |
|
| 166 |
</day> |
|
| 167 |
<month> |
|
| 168 |
<_nullIf> |
|
| 169 |
<null>0</null> |
|
| 170 |
<type>float</type> |
|
| 171 |
<value>$MonthCollected</value> |
|
| 172 |
</_nullIf> |
|
| 173 |
</month> |
|
| 174 |
<year> |
|
| 175 |
<_nullIf> |
|
| 176 |
<null>0</null> |
|
| 177 |
<type>float</type> |
|
| 178 |
<value>$YearCollected</value> |
|
| 179 |
</_nullIf> |
|
| 180 |
</year> |
|
| 181 |
</_date> |
|
| 182 |
</1> |
|
| 183 |
</_alt> |
|
| 188 | 184 |
</date> |
| 189 | 185 |
</_date> |
| 190 | 186 |
</collectiondate> |
| inputs/MO/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 13 | 13 |
StateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
| 14 | 14 |
Country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
| 15 | 15 |
ContinentOcean,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
| 16 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 17 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 18 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 16 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 17 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 18 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 19 | 19 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 20 | 20 |
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
| 21 | 21 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/1, |
| inputs/QMOR/test/import.specimens.xml.ref | ||
|---|---|---|
| 174 | 174 |
<method_id><method><name>$samplingProtocol</name></method></method_id> |
| 175 | 175 |
<taxonoccurrence> |
| 176 | 176 |
<aggregateoccurrence> |
| 177 |
<collectiondate><_date><date><_dateRangeStart><value><_alt><2>$eventDate</2></_alt></value></_dateRangeStart></date></_date></collectiondate>
|
|
| 177 |
<collectiondate><_date><date><_alt><2>$eventDate</2></_alt></date></_date></collectiondate>
|
|
| 178 | 178 |
<count>$individualCount</count> |
| 179 | 179 |
<plantobservation> |
| 180 | 180 |
<definedvalue fkey="tablerecord_id"> |
| mappings/VegCSV-VegBIEN.specimens.csv | ||
|---|---|---|
| 43 | 43 |
silt,/location/locationevent/soilobs/silt, |
| 44 | 44 |
sodium,/location/locationevent/soilobs/sodium, |
| 45 | 45 |
texture,/location/locationevent/soilobs/texture, |
| 46 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value,
|
|
| 46 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date, |
|
| 47 | 47 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 48 | 48 |
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
| 49 | 49 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 63 | 63 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 64 | 64 |
FieldNumber,/location/locationevent/authoreventcode, |
| 65 | 65 |
fieldNumber,/location/locationevent/authoreventcode, |
| 66 |
EventDate/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping
|
|
| 67 |
eventDate/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping
|
|
| 68 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 69 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 70 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 71 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 72 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 73 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 74 |
EventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2,
|
|
| 75 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/2,
|
|
| 76 |
CollectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/3,
|
|
| 77 |
collectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_dateRangeStart/value/_alt/3,
|
|
| 66 |
EventDate/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping |
|
| 67 |
eventDate/_alt,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping |
|
| 68 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 69 |
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 70 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 71 |
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 72 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 73 |
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 74 |
EventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
|
| 75 |
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
|
| 76 |
CollectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
|
| 77 |
collectedDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
|
| 78 | 78 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 79 | 79 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
| 80 | 80 |
FieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: eventDate: collectiondate mapping: Removed _dateRangeStart filter because the eventDate (obsstartdate) is only valid as the date the specimen was collected if it is a single date, not a date range. (It is still valid as the obsstartdate/obsenddate if it's a range.)