Revision 4046
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/QMOR/test/import.specimens.xml.ref | ||
|---|---|---|
| 201 | 201 |
</specimenreplicate> |
| 202 | 202 |
</plantobservation> |
| 203 | 203 |
</aggregateoccurrence> |
| 204 |
<sourceaccessioncode>$id</sourceaccessioncode> |
|
| 204 |
<sourceaccessioncode> |
|
| 205 |
<_alt> |
|
| 206 |
<1>$id</1> |
|
| 207 |
<2><_if name="if indirect voucher"><else>$catalogNumber</else></_if></2> |
|
| 208 |
</_alt> |
|
| 209 |
</sourceaccessioncode> |
|
| 205 | 210 |
<taxondetermination> |
| 206 | 211 |
<isoriginal>true</isoriginal> |
| 207 | 212 |
<role>identifier</role> |
| mappings/VegCSV-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
VegCSV[DwC],VegBIEN:,Comments |
|
| 2 |
plotArea,/location/area, |
|
| 3 |
plotName,/location/authorlocationcode/_alt/1, |
|
| 4 |
fieldNumber,/location/authorlocationcode/_alt/2, |
|
| 5 |
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
|
| 6 |
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 7 |
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
|
| 8 |
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
|
| 9 |
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
|
| 10 |
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
|
| 11 |
landform,/location/landform, |
|
| 12 |
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1, |
|
| 13 |
footprintWKT,/location/locationdetermination/footprintgeometry_dwc, |
|
| 14 |
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
|
| 15 |
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
|
| 16 |
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
|
| 17 |
stateProvince,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
|
| 18 |
country,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
|
| 19 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
|
| 20 |
samplingProtocol,/location/locationevent/*_id/method/name, |
|
| 21 |
projectName,/location/locationevent/*_id/project/projectname, |
|
| 22 |
projectID,/location/locationevent/*_id/project/sourceaccessioncode, |
|
| 23 |
fieldNumber,/location/locationevent/authoreventcode, |
|
| 24 |
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
| 25 |
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
|
| 26 |
plotEventEndDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value, |
|
| 27 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1, |
|
| 28 |
plotEventStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
|
| 29 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
|
| 30 |
precipitation,/location/locationevent/precipitation, |
|
| 31 |
acidity,/location/locationevent/soilobs/acidity, |
|
| 32 |
baseSaturation,/location/locationevent/soilobs/basesaturation, |
|
| 33 |
calcium,/location/locationevent/soilobs/calcium, |
|
| 34 |
carbon,/location/locationevent/soilobs/carbon, |
|
| 35 |
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity, |
|
| 36 |
clay,/location/locationevent/soilobs/clay, |
|
| 37 |
conductivity,/location/locationevent/soilobs/conductivity, |
|
| 38 |
magnesium,/location/locationevent/soilobs/magnesium, |
|
| 39 |
nitrogen,/location/locationevent/soilobs/nitrogen, |
|
| 40 |
organic,/location/locationevent/soilobs/organic, |
|
| 41 |
ph,/location/locationevent/soilobs/ph, |
|
| 42 |
phosphorus,/location/locationevent/soilobs/phosphorus, |
|
| 43 |
potassium,/location/locationevent/soilobs/potassium, |
|
| 44 |
sand,/location/locationevent/soilobs/sand, |
|
| 45 |
silt,/location/locationevent/soilobs/silt, |
|
| 46 |
sodium,/location/locationevent/soilobs/sodium, |
|
| 47 |
texture,/location/locationevent/soilobs/texture, |
|
| 48 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
|
| 49 |
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
|
| 50 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 51 |
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover, |
|
| 52 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
| 53 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode, |
|
| 54 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
|
| 55 |
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 56 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
| 57 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
|
| 58 |
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter, |
|
| 59 |
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 60 |
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 61 |
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 62 |
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 63 |
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 64 |
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight, |
|
| 65 |
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height, |
|
| 66 |
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch, |
|
| 67 |
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2 |
|
| 68 |
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag, |
|
| 69 |
relativePlotX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition, |
|
| 70 |
relativePlotY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition, |
|
| 71 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
|
| 72 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
|
| 73 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2, |
|
| 74 |
scientificName,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3, |
|
| 75 |
computer.scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
| 76 |
computer.taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 77 |
computer.infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
| 78 |
computer.specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 79 |
computer.genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 80 |
computer.family,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 81 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
| 82 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
| 83 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
| 84 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 85 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 86 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 87 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
|
| 88 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
|
| 89 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
|
| 90 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
| 91 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit, |
|
| 92 |
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first, |
|
| 93 |
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last, |
|
| 94 |
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 95 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
| 96 |
temperature,/location/locationevent/temperature, |
|
| 97 |
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 98 |
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 99 |
locality,/location/locationnarrative/_merge/1, |
|
| 100 |
plotNotes,/location/notespublic, |
|
| 101 |
parentPlotName,/location/parent_id/location/authorlocationcode, |
|
| 102 |
parentLocationID,/location/parent_id/location/sourceaccessioncode, |
|
| 103 |
slopeAspect,/location/slopeaspect/_compass/value, |
|
| 104 |
slopeGradient,/location/slopegradient, |
|
| 105 |
locationID,/location/sourceaccessioncode, |
|
| 1 |
"VegCSV[DwC]","VegBIEN:","Comments" |
|
| 2 |
"plotArea","/location/area", |
|
| 3 |
"plotName","/location/authorlocationcode/_alt/1", |
|
| 4 |
"fieldNumber","/location/authorlocationcode/_alt/2", |
|
| 5 |
"verbatimElevation","/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value", |
|
| 6 |
"maximumElevationInMeters","/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 7 |
"minimumElevationInMeters","/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
|
| 8 |
"minimumElevationInMeters","/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value", |
|
| 9 |
"maximumElevationInMeters","/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value", |
|
| 10 |
"minimumElevationInMeters","/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value", |
|
| 11 |
"landform","/location/landform", |
|
| 12 |
"coordinateUncertaintyInMeters","/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1", |
|
| 13 |
"footprintWKT","/location/locationdetermination/footprintgeometry_dwc", |
|
| 14 |
"decimalLatitude","/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value", |
|
| 15 |
"decimalLongitude","/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value", |
|
| 16 |
"county","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename", |
|
| 17 |
"stateProvince","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename", |
|
| 18 |
"country","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename", |
|
| 19 |
"continent","/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename", |
|
| 20 |
"samplingProtocol","/location/locationevent/*_id/method/name", |
|
| 21 |
"projectName","/location/locationevent/*_id/project/projectname", |
|
| 22 |
"projectID","/location/locationevent/*_id/project/sourceaccessioncode", |
|
| 23 |
"fieldNumber","/location/locationevent/authoreventcode", |
|
| 24 |
"communityID","/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname", |
|
| 25 |
"communityName","/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription", |
|
| 26 |
"plotEventEndDate","/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value", |
|
| 27 |
"eventDate","/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1", |
|
| 28 |
"plotEventStartDate","/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value", |
|
| 29 |
"eventDate","/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1", |
|
| 30 |
"precipitation","/location/locationevent/precipitation", |
|
| 31 |
"acidity","/location/locationevent/soilobs/acidity", |
|
| 32 |
"baseSaturation","/location/locationevent/soilobs/basesaturation", |
|
| 33 |
"calcium","/location/locationevent/soilobs/calcium", |
|
| 34 |
"carbon","/location/locationevent/soilobs/carbon", |
|
| 35 |
"cationExchangeCapacity","/location/locationevent/soilobs/cationexchangecapacity", |
|
| 36 |
"clay","/location/locationevent/soilobs/clay", |
|
| 37 |
"conductivity","/location/locationevent/soilobs/conductivity", |
|
| 38 |
"magnesium","/location/locationevent/soilobs/magnesium", |
|
| 39 |
"nitrogen","/location/locationevent/soilobs/nitrogen", |
|
| 40 |
"organic","/location/locationevent/soilobs/organic", |
|
| 41 |
"ph","/location/locationevent/soilobs/ph", |
|
| 42 |
"phosphorus","/location/locationevent/soilobs/phosphorus", |
|
| 43 |
"potassium","/location/locationevent/soilobs/potassium", |
|
| 44 |
"sand","/location/locationevent/soilobs/sand", |
|
| 45 |
"silt","/location/locationevent/soilobs/silt", |
|
| 46 |
"sodium","/location/locationevent/soilobs/sodium", |
|
| 47 |
"texture","/location/locationevent/soilobs/texture", |
|
| 48 |
"individualCount","/location/locationevent/taxonoccurrence/aggregateoccurrence/count", |
|
| 49 |
"coverPercent","/location/locationevent/taxonoccurrence/aggregateoccurrence/cover", |
|
| 50 |
"censusNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 51 |
"volumeCanopy","/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover", |
|
| 52 |
"fieldNotes","/location/locationevent/taxonoccurrence/aggregateoccurrence/notes", |
|
| 53 |
"recordNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode", |
|
| 54 |
"occurrenceID","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode", |
|
| 55 |
"voucherType","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 56 |
"catalogNumber","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
| 57 |
"stemCount","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount", |
|
| 58 |
"basalDiameter","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter", |
|
| 59 |
"canopyForm","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 60 |
"canopyPosition","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 61 |
"diameterBreastHeightGentry","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 62 |
"lianaInfestation","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 63 |
"stemNotes","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 64 |
"diameterBreastHeight","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight", |
|
| 65 |
"height","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height", |
|
| 66 |
"heightFirstBranch","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch", |
|
| 67 |
"tag","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag","Quotes sort it before tag2" |
|
| 68 |
"previousTag","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag", |
|
| 69 |
"relativePlotX","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition", |
|
| 70 |
"relativePlotY","/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition", |
|
| 71 |
"growthForm","/location/locationevent/taxonoccurrence/growthform", |
|
| 72 |
"occurrenceID","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1", |
|
| 73 |
"catalogNumber","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 74 |
"recordNumber","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3", |
|
| 75 |
"scientificName","/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/4", |
|
| 76 |
"computer.scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
| 77 |
"computer.taxonRank","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
|
| 78 |
"computer.infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
|
| 79 |
"computer.specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 80 |
"computer.genus","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 81 |
"computer.family","/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 82 |
"scientificName","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
|
| 83 |
"scientificNameAuthorship","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
|
| 84 |
"infraspecificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
|
| 85 |
"specificEpithet","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname", |
|
| 86 |
"genus","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname", |
|
| 87 |
"family","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname", |
|
| 88 |
"order","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname", |
|
| 89 |
"class","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname", |
|
| 90 |
"phylum","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname", |
|
| 91 |
"kingdom","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname", |
|
| 92 |
"identificationQualifier","/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/taxonfit", |
|
| 93 |
"recordedBy.givenName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first", |
|
| 94 |
"recordedBy.surName","/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last", |
|
| 95 |
"voucherType","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
|
| 96 |
"catalogNumber","/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
| 97 |
"temperature","/location/locationevent/temperature", |
|
| 98 |
"maximumDepthInMeters","/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 99 |
"minimumDepthInMeters","/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value", |
|
| 100 |
"locality","/location/locationnarrative/_merge/1", |
|
| 101 |
"plotNotes","/location/notespublic", |
|
| 102 |
"parentPlotName","/location/parent_id/location/authorlocationcode", |
|
| 103 |
"parentLocationID","/location/parent_id/location/sourceaccessioncode", |
|
| 104 |
"slopeAspect","/location/slopeaspect/_compass/value", |
|
| 105 |
"slopeGradient","/location/slopegradient", |
|
| 106 |
"locationID","/location/sourceaccessioncode", |
|
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 40 | 40 |
establishmentMeans,//taxonoccurrence/iscultivated, |
| 41 | 41 |
establishmentMeans,//taxonoccurrence/isnative, |
| 42 | 42 |
occurrenceID,//taxonoccurrence/sourceaccessioncode, |
| 43 |
catalogNumber,"//taxonoccurrence/sourceaccessioncode/_if[@name=""if indirect voucher""]/else", |
|
| 43 | 44 |
recordNumber,//taxonoccurrence/sourceaccessioncode, |
| 44 | 45 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname, |
| 45 | 46 |
identifiedBy,//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename, |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 74 | 74 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 75 | 75 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 76 | 76 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 77 |
collectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 78 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2, |
|
| 77 |
catalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 78 |
collectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 79 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2, |
|
| 79 | 80 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 80 | 81 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 81 | 82 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/XAL/test/import.specimens.xml.ref | ||
|---|---|---|
| 257 | 257 |
</specimenreplicate> |
| 258 | 258 |
</plantobservation> |
| 259 | 259 |
</aggregateoccurrence> |
| 260 |
<sourceaccessioncode>$CollectorNumber</sourceaccessioncode> |
|
| 260 |
<sourceaccessioncode> |
|
| 261 |
<_alt> |
|
| 262 |
<2><_if name="if indirect voucher"><else>$CatalogNumber</else></_if></2> |
|
| 263 |
<3>$CollectorNumber</3> |
|
| 264 |
</_alt> |
|
| 265 |
</sourceaccessioncode> |
|
| 261 | 266 |
<taxondetermination> |
| 262 | 267 |
<isoriginal>true</isoriginal> |
| 263 | 268 |
<role>identifier</role> |
| inputs/XAL/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 32 | 32 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 33 | 33 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
| 34 | 34 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 35 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 35 |
CatalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 36 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 36 | 37 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 37 | 38 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 38 | 39 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/NY/test/import.specimens.xml.ref | ||
|---|---|---|
| 297 | 297 |
<sourceaccessioncode> |
| 298 | 298 |
<_alt> |
| 299 | 299 |
<1>$UniqueNYInternalRecordNumber</1> |
| 300 |
<2> |
|
| 300 |
<2><_if name="if indirect voucher"><else>$CatalogNumber</else></_if></2> |
|
| 301 |
<3> |
|
| 301 | 302 |
<_alt> |
| 302 | 303 |
<1>$CollectorNumber</1> |
| 303 | 304 |
<2>$FieldNumber</2> |
| 304 | 305 |
</_alt> |
| 305 |
</2>
|
|
| 306 |
</3>
|
|
| 306 | 307 |
</_alt> |
| 307 | 308 |
</sourceaccessioncode> |
| 308 | 309 |
<taxondetermination> |
| inputs/NY/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 38 | 38 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 39 | 39 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 40 | 40 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 41 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 42 |
FieldNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2,Usage inconsistent with DwC definition |
|
| 41 |
CatalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 42 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 43 |
FieldNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2,Usage inconsistent with DwC definition |
|
| 43 | 44 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 44 | 45 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 45 | 46 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/UNCC/test/import.specimens.xml.ref | ||
|---|---|---|
| 195 | 195 |
<sourceaccessioncode> |
| 196 | 196 |
<_alt> |
| 197 | 197 |
<1>$accession</1> |
| 198 |
<2>$collectno</2>
|
|
| 198 |
<3>$collectno</3>
|
|
| 199 | 199 |
</_alt> |
| 200 | 200 |
</sourceaccessioncode> |
| 201 | 201 |
<taxondetermination> |
| inputs/UNCC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 27 | 27 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
| 28 | 28 |
cultivated,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values |
| 29 | 29 |
accession,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 30 |
collectno,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1,
|
|
| 30 |
collectno,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1,
|
|
| 31 | 31 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 32 | 32 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| 33 | 33 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname", |
| inputs/ACAD/test/import.specimens.xml.ref | ||
|---|---|---|
| 85 | 85 |
<sourceaccessioncode> |
| 86 | 86 |
<_alt> |
| 87 | 87 |
<1>$id</1> |
| 88 |
<2>$recordNumber</2> |
|
| 88 |
<2><_if name="if indirect voucher"><else>$catalogNumber</else></_if></2> |
|
| 89 |
<3>$recordNumber</3> |
|
| 89 | 90 |
</_alt> |
| 90 | 91 |
</sourceaccessioncode> |
| 91 | 92 |
<taxondetermination> |
| inputs/ACAD/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 20 | 20 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 21 | 21 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 22 | 22 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 23 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2, |
|
| 23 |
catalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 24 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2, |
|
| 24 | 25 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 25 | 26 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 26 | 27 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/CVS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 10 | 10 |
authorObsCode,/location/locationevent/authoreventcode, |
| 11 | 11 |
obsStartDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value, |
| 12 | 12 |
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover, |
| 13 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,
|
|
| 13 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/4,
|
|
| 14 | 14 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 15 | 15 |
confidentialityStatus,,** No input mapping for confidentialityStatus ** |
| inputs/SALVIAS-CSV/test/import.organisms.xml.ref | ||
|---|---|---|
| 142 | 142 |
<sourceaccessioncode> |
| 143 | 143 |
<_alt> |
| 144 | 144 |
<1>$OBSERVATION_ID</1> |
| 145 |
<2>$individual_code</2> |
|
| 146 |
<3><_name><last>$orig_species</last></_name></3> |
|
| 145 |
<2> |
|
| 146 |
<_if name="if indirect voucher"> |
|
| 147 |
<else> |
|
| 148 |
<_alt> |
|
| 149 |
<1>$coll_number</1> |
|
| 150 |
<2>$voucher_string</2> |
|
| 151 |
</_alt> |
|
| 152 |
</else> |
|
| 153 |
</_if> |
|
| 154 |
</2> |
|
| 155 |
<3>$individual_code</3> |
|
| 156 |
<4><_name><last>$orig_species</last></_name></4> |
|
| 147 | 157 |
</_alt> |
| 148 | 158 |
</sourceaccessioncode> |
| 149 | 159 |
<taxondetermination> |
| inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 35 | 35 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 36 | 36 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
|
| 37 | 37 |
OBSERVATION_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 38 |
individual_code,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 39 |
orig_species,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT |
|
| 38 |
coll_number,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Incorrect. Map instead as for voucher_string |
|
| 39 |
voucher_string,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
|
| 40 |
individual_code,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 41 |
orig_species,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/4/_name/last,Brad: OMIT |
|
| 40 | 42 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
| 41 | 43 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
| 42 | 44 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| inputs/SALVIAS/test/import.organisms.xml.ref | ||
|---|---|---|
| 114 | 114 |
<sourceaccessioncode> |
| 115 | 115 |
<_alt> |
| 116 | 116 |
<1>$PlotObsID</1> |
| 117 |
<2>$Ind</2> |
|
| 118 |
<3> |
|
| 117 |
<2> |
|
| 118 |
<_if name="if indirect voucher"> |
|
| 119 |
<else> |
|
| 120 |
<_alt> |
|
| 121 |
<1>$coll_number</1> |
|
| 122 |
<2>$SourceVoucher</2> |
|
| 123 |
</_alt> |
|
| 124 |
</else> |
|
| 125 |
</_if> |
|
| 126 |
</2> |
|
| 127 |
<3>$Ind</3> |
|
| 128 |
<4> |
|
| 119 | 129 |
<_name> |
| 120 | 130 |
<first>$OrigGenus</first> |
| 121 | 131 |
<last>$OrigSpecies</last> |
| 122 | 132 |
</_name> |
| 123 |
</3>
|
|
| 133 |
</4>
|
|
| 124 | 134 |
</_alt> |
| 125 | 135 |
</sourceaccessioncode> |
| 126 | 136 |
<taxondetermination> |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 38 | 38 |
y_position,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 39 | 39 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
|
| 40 | 40 |
PlotObsID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 41 |
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 42 |
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/first, |
|
| 43 |
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_name/last,Brad: OMIT |
|
| 41 |
coll_number,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Incorrect. Map instead as for voucher_string |
|
| 42 |
SourceVoucher,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
|
| 43 |
Ind,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
|
| 44 |
OrigGenus,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/4/_name/first, |
|
| 45 |
OrigSpecies,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/4/_name/last,Brad: OMIT |
|
| 44 | 46 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
| 45 | 47 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
| 46 | 48 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last", |
| inputs/U/test/import.specimens.xml.ref | ||
|---|---|---|
| 152 | 152 |
<sourceaccessioncode> |
| 153 | 153 |
<_alt> |
| 154 | 154 |
<1>$ID</1> |
| 155 |
<2>$Number</2> |
|
| 155 |
<2><_if name="if indirect voucher"><else>$Barcode</else></_if></2> |
|
| 156 |
<3>$Number</3> |
|
| 156 | 157 |
</_alt> |
| 157 | 158 |
</sourceaccessioncode> |
| 158 | 159 |
<taxondetermination> |
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 19 | 19 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
| 20 | 20 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 21 | 21 |
ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 22 |
Number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2, |
|
| 22 |
Barcode,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 23 |
Number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2, |
|
| 23 | 24 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 24 | 25 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 25 | 26 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/ARIZ/test/import.specimens.xml.ref | ||
|---|---|---|
| 319 | 319 |
<sourceaccessioncode> |
| 320 | 320 |
<_alt> |
| 321 | 321 |
<1>$GlobalUniqueIdentifier</1> |
| 322 |
<2> |
|
| 322 |
<2><_if name="if indirect voucher"><else>$CatalogNumberNumeric</else></_if></2> |
|
| 323 |
<3> |
|
| 323 | 324 |
<_alt> |
| 324 | 325 |
<1>$CollectorNumber</1> |
| 325 | 326 |
<2>$FieldNumber</2> |
| 326 | 327 |
</_alt> |
| 327 |
</2>
|
|
| 328 |
</3>
|
|
| 328 | 329 |
</_alt> |
| 329 | 330 |
</sourceaccessioncode> |
| 330 | 331 |
<taxondetermination> |
| inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 43 | 43 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 44 | 44 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 45 | 45 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 46 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 47 |
FieldNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2,Usage inconsistent with DwC definition |
|
| 46 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 47 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 48 |
FieldNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2,Usage inconsistent with DwC definition |
|
| 48 | 49 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 49 | 50 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 50 | 51 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/GBIF/test/import.specimens.xml.ref | ||
|---|---|---|
| 166 | 166 |
</specimenreplicate> |
| 167 | 167 |
</plantobservation> |
| 168 | 168 |
</aggregateoccurrence> |
| 169 |
<sourceaccessioncode><_if name="if indirect voucher"><else>$CatalogNO</else></_if></sourceaccessioncode> |
|
| 169 | 170 |
<taxondetermination> |
| 170 | 171 |
<isoriginal>true</isoriginal> |
| 171 | 172 |
<role>identifier</role> |
| inputs/GBIF/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 20 | 20 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc", |
| 21 | 21 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 22 | 22 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 23 |
CatalogNO,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 23 | 24 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 24 | 25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 25 | 26 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/NCU-NCSC/test/import.specimens.xml.ref | ||
|---|---|---|
| 107 | 107 |
</value> |
| 108 | 108 |
</_map> |
| 109 | 109 |
</isnative> |
| 110 |
<sourceaccessioncode>$Accession Number</sourceaccessioncode> |
|
| 110 |
<sourceaccessioncode> |
|
| 111 |
<_alt> |
|
| 112 |
<1>$Accession Number</1> |
|
| 113 |
<2><_if name="if indirect voucher"><else>$Barcode</else></_if></2> |
|
| 114 |
</_alt> |
|
| 115 |
</sourceaccessioncode> |
|
| 111 | 116 |
<taxondetermination> |
| 112 | 117 |
<isoriginal>true</isoriginal> |
| 113 | 118 |
<role>identifier</role> |
| inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 18 | 18 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
| 19 | 19 |
Cultivated?,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
| 20 | 20 |
Accession Number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 21 |
Barcode,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 21 | 22 |
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname", |
| 22 | 23 |
Accession Number,/location/sourceaccessioncode/_alt/1, |
| 23 | 24 |
Alt E/W,,** No input mapping for Alt E/W ** |
| inputs/SpeciesLink/test/import.specimens.xml.ref | ||
|---|---|---|
| 458 | 458 |
<_alt> |
| 459 | 459 |
<1>$dwc_dwcore_GlobalUniqueIdentifier</1> |
| 460 | 460 |
<2> |
| 461 |
<_if name="if indirect voucher"> |
|
| 462 |
<else> |
|
| 463 |
<_alt> |
|
| 464 |
<0>$dwc_dwcore_CatalogNumber</0> |
|
| 465 |
<1>$conceptual_darwin_2003_1_0_CatalogNumber</1> |
|
| 466 |
<2>$dwc_terms_catalogNumber</2> |
|
| 467 |
</_alt> |
|
| 468 |
</else> |
|
| 469 |
</_if> |
|
| 470 |
</2> |
|
| 471 |
<3> |
|
| 461 | 472 |
<_alt> |
| 462 | 473 |
<1> |
| 463 | 474 |
<_alt> |
| ... | ... | |
| 467 | 478 |
</1> |
| 468 | 479 |
<2>$dwc_terms_recordNumber</2> |
| 469 | 480 |
</_alt> |
| 470 |
</2>
|
|
| 481 |
</3>
|
|
| 471 | 482 |
</_alt> |
| 472 | 483 |
</sourceaccessioncode> |
| 473 | 484 |
<taxondetermination> |
| inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 72 | 72 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 73 | 73 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 74 | 74 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 75 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 76 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2, |
|
| 75 |
CatalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 76 |
catalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 77 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 78 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2, |
|
| 77 | 79 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 78 | 80 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 79 | 81 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| inputs/MO/test/import.specimens.xml.ref | ||
|---|---|---|
| 246 | 246 |
</specimenreplicate> |
| 247 | 247 |
</plantobservation> |
| 248 | 248 |
</aggregateoccurrence> |
| 249 |
<sourceaccessioncode>$CollectorNumber</sourceaccessioncode> |
|
| 249 |
<sourceaccessioncode> |
|
| 250 |
<_alt> |
|
| 251 |
<2><_if name="if indirect voucher"><else>$CatalogNumber</else></_if></2> |
|
| 252 |
<3>$CollectorNumber</3> |
|
| 253 |
</_alt> |
|
| 254 |
</sourceaccessioncode> |
|
| 250 | 255 |
<taxondetermination> |
| 251 | 256 |
<isoriginal>true</isoriginal> |
| 252 | 257 |
<role>identifier</role> |
| inputs/MO/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 29 | 29 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
| 30 | 30 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
| 31 | 31 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 32 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 32 |
CatalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 33 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 33 | 34 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 34 | 35 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 35 | 36 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| inputs/QMOR/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 30 | 30 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 31 | 31 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 32 | 32 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 33 |
catalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 33 | 34 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 34 | 35 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 35 | 36 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 40 | 40 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value", |
| 41 | 41 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 42 | 42 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 43 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2, |
|
| 43 |
catalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 44 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3, |
|
| 44 | 45 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 45 | 46 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
| 46 | 47 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/surname/_namePart/last, |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 149 | 149 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 150 | 150 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 151 | 151 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
| 152 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 153 |
collectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/1, |
|
| 154 |
RecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2, |
|
| 155 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_alt/2, |
|
| 152 |
CatalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 153 |
catalogNumber,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
|
| 154 |
CollectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 155 |
collectorNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/1, |
|
| 156 |
RecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2, |
|
| 157 |
recordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/3/_alt/2, |
|
| 156 | 158 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 157 | 159 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/givenname/_namePart/first, |
| 158 | 160 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true]/*_id/party/middlename/_namePart/middle, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: taxonoccurrence.sourceaccessioncode mappings: Added catalogNumber mapping, which takes precendence over recordNumber and is applicable to specimens data and direct vouchers. recordNumber should only be used as a last resort (before the taxon name) because this is collector-assigned and often not unique within anything.