Revision 4057
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/XAL/test/import.specimens.xml.ref | ||
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250 | 250 |
<definedvalue>$Sex</definedvalue> |
251 | 251 |
</definedvalue> |
252 | 252 |
<specimenreplicate> |
253 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNumber</catalognumber_dwc></else></_if>
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|
253 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$CatalogNumber</else></_if></catalognumber_dwc>
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254 | 254 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
255 | 255 |
<collectionnumber>$CollectorNumber</collectionnumber> |
256 | 256 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
inputs/XAL/maps/VegBIEN.specimens.csv | ||
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28 | 28 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
29 | 29 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/1, |
30 | 30 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
31 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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31 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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32 | 32 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
33 | 33 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
34 | 34 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
inputs/NY/test/import.specimens.xml.ref | ||
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281 | 281 |
</definedvalue> |
282 | 282 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
283 | 283 |
<specimenreplicate> |
284 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNumber</catalognumber_dwc></else></_if>
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|
284 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$CatalogNumber</else></_if></catalognumber_dwc>
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285 | 285 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
286 | 286 |
<collectionnumber> |
287 | 287 |
<_alt> |
inputs/NY/maps/VegBIEN.specimens.csv | ||
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31 | 31 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/2,Usage inconsistent with DwC definition |
32 | 32 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
33 | 33 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
34 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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34 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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35 | 35 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
36 | 36 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
37 | 37 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
inputs/ACAD/test/import.specimens.xml.ref | ||
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69 | 69 |
<authorplantcode>$recordNumber</authorplantcode> |
70 | 70 |
<sourceaccessioncode>$id</sourceaccessioncode> |
71 | 71 |
<specimenreplicate> |
72 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$catalogNumber</catalognumber_dwc></else></_if>
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|
72 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$catalogNumber</else></_if></catalognumber_dwc>
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73 | 73 |
<collectioncode_dwc> |
74 | 74 |
<_merge> |
75 | 75 |
<1>$collectionCode</1> |
inputs/ACAD/maps/VegBIEN.specimens.csv | ||
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13 | 13 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1, |
14 | 14 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/2, |
15 | 15 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
16 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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16 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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17 | 17 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
18 | 18 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
19 | 19 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
inputs/U/test/import.specimens.xml.ref | ||
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143 | 143 |
<authorplantcode>$Number</authorplantcode> |
144 | 144 |
<sourceaccessioncode>$ID</sourceaccessioncode> |
145 | 145 |
<specimenreplicate> |
146 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$Barcode</catalognumber_dwc></else></_if>
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146 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$Barcode</else></_if></catalognumber_dwc>
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147 | 147 |
<collectionnumber>$Number</collectionnumber> |
148 | 148 |
<sourceaccessioncode>$ID</sourceaccessioncode> |
149 | 149 |
</specimenreplicate> |
inputs/U/maps/VegBIEN.specimens.csv | ||
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15 | 15 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
16 | 16 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/2, |
17 | 17 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
18 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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18 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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19 | 19 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2, |
20 | 20 |
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
21 | 21 |
ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/1, |
inputs/ARIZ/test/import.specimens.xml.ref | ||
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303 | 303 |
</definedvalue> |
304 | 304 |
<sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode> |
305 | 305 |
<specimenreplicate> |
306 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNumberNumeric</catalognumber_dwc></else></_if>
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306 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$CatalogNumberNumeric</else></_if></catalognumber_dwc>
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307 | 307 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
308 | 308 |
<collectionnumber> |
309 | 309 |
<_alt> |
inputs/ARIZ/maps/VegBIEN.specimens.csv | ||
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36 | 36 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/2,Usage inconsistent with DwC definition |
37 | 37 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
38 | 38 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
39 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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39 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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40 | 40 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
41 | 41 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
42 | 42 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,Usage inconsistent with DwC definition |
inputs/GBIF/test/import.specimens.xml.ref | ||
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160 | 160 |
<collectiondate><_date><date>$LatestDateCollected</date></_date></collectiondate> |
161 | 161 |
<plantobservation> |
162 | 162 |
<specimenreplicate> |
163 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNO</catalognumber_dwc></else></_if>
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163 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$CatalogNO</else></_if></catalognumber_dwc>
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164 | 164 |
<collectioncode_dwc>$CollectionCD</collectioncode_dwc> |
165 | 165 |
<institution_id><party><organizationname>$InstitutionCD</organizationname></party></institution_id> |
166 | 166 |
</specimenreplicate> |
inputs/GBIF/maps/VegBIEN.specimens.csv | ||
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17 | 17 |
LatestDateCollected,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2/_alt/2, |
18 | 18 |
LatestDateCollected,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/2, |
19 | 19 |
LatestDateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/2, |
20 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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20 |
CatalogNO,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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21 | 21 |
CollectionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
22 | 22 |
InstitutionCD,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
23 | 23 |
CatalogNO,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_alt/2/_if[@name=""if indirect voucher""]/else", |
inputs/NCU-NCSC/test/import.specimens.xml.ref | ||
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73 | 73 |
<plantobservation> |
74 | 74 |
<sourceaccessioncode>$Accession Number</sourceaccessioncode> |
75 | 75 |
<specimenreplicate> |
76 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$Barcode</catalognumber_dwc></else></_if>
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76 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$Barcode</else></_if></catalognumber_dwc>
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77 | 77 |
<collectioncode_dwc>$SeriesName</collectioncode_dwc> |
78 | 78 |
<sourceaccessioncode>$Accession Number</sourceaccessioncode> |
79 | 79 |
</specimenreplicate> |
inputs/NCU-NCSC/maps/VegBIEN.specimens.csv | ||
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12 | 12 |
Collect Date,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2/_alt/3, |
13 | 13 |
Collect Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_*/date/_alt/3, |
14 | 14 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
15 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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15 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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16 | 16 |
SeriesName,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
17 | 17 |
Accession Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
18 | 18 |
Cultivated?,"/location/locationevent/taxonoccurrence/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Yes=cultivated,No=wild]/value", |
inputs/SpeciesLink/test/import.specimens.xml.ref | ||
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405 | 405 |
</definedvalue> |
406 | 406 |
<sourceaccessioncode>$dwc_dwcore_GlobalUniqueIdentifier</sourceaccessioncode> |
407 | 407 |
<specimenreplicate> |
408 |
<_if name="if indirect voucher">
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409 |
<else>
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410 |
<catalognumber_dwc>
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408 |
<catalognumber_dwc>
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409 |
<_if name="if indirect voucher">
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410 |
<else>
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411 | 411 |
<_merge> |
412 | 412 |
<0>$dwc_dwcore_CatalogNumber</0> |
413 | 413 |
<1>$conceptual_darwin_2003_1_0_CatalogNumber</1> |
414 | 414 |
<2>$dwc_terms_catalogNumber</2> |
415 | 415 |
</_merge> |
416 |
</catalognumber_dwc>
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417 |
</else>
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418 |
</_if>
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416 |
</else>
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417 |
</_if>
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418 |
</catalognumber_dwc>
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419 | 419 |
<collectioncode_dwc> |
420 | 420 |
<_merge> |
421 | 421 |
<1> |
inputs/SpeciesLink/maps/VegBIEN.specimens.csv | ||
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61 | 61 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
62 | 62 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
63 | 63 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
64 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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65 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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64 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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65 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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66 | 66 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
67 | 67 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
68 | 68 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
inputs/MO/test/import.specimens.xml.ref | ||
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239 | 239 |
<plantobservation> |
240 | 240 |
<authorplantcode>$CollectorNumber</authorplantcode> |
241 | 241 |
<specimenreplicate> |
242 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$CatalogNumber</catalognumber_dwc></else></_if>
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242 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$CatalogNumber</else></_if></catalognumber_dwc>
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243 | 243 |
<collectioncode_dwc>$CollectionCode</collectioncode_dwc> |
244 | 244 |
<collectionnumber>$CollectorNumber</collectionnumber> |
245 | 245 |
<institution_id><party><organizationname>$InstitutionCode</organizationname></party></institution_id> |
inputs/MO/maps/VegBIEN.specimens.csv | ||
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25 | 25 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
26 | 26 |
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
27 | 27 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_alt/1, |
28 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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28 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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29 | 29 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
30 | 30 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
31 | 31 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
inputs/QMOR/test/import.specimens.xml.ref | ||
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189 | 189 |
</definedvalue> |
190 | 190 |
<sourceaccessioncode>$id</sourceaccessioncode> |
191 | 191 |
<specimenreplicate> |
192 |
<_if name="if indirect voucher"><else><catalognumber_dwc>$catalogNumber</catalognumber_dwc></else></_if>
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192 |
<catalognumber_dwc><_if name="if indirect voucher"><else>$catalogNumber</else></_if></catalognumber_dwc>
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193 | 193 |
<collectioncode_dwc> |
194 | 194 |
<_merge> |
195 | 195 |
<1>$collectionCode</1> |
inputs/QMOR/maps/VegBIEN.specimens.csv | ||
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24 | 24 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
25 | 25 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
26 | 26 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
27 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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27 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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28 | 28 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
29 | 29 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
30 | 30 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
mappings/DwC2-VegBIEN.specimens.csv | ||
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31 | 31 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode, |
32 | 32 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
33 | 33 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
34 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
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34 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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35 | 35 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
36 | 36 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
37 | 37 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber, |
mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
---|---|---|
31 | 31 |
recordNumber,//plantobservation/authorplantcode, |
32 | 32 |
sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
33 | 33 |
occurrenceID,//plantobservation/sourceaccessioncode, |
34 |
catalogNumber,"//plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
|
|
34 |
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
35 | 35 |
collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
36 | 36 |
collectionID,//specimenreplicate/collectioncode_dwc, |
37 | 37 |
recordNumber,//specimenreplicate/collectionnumber, |
mappings/DwC-VegBIEN.specimens.csv | ||
---|---|---|
121 | 121 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
122 | 122 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
123 | 123 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
124 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
|
|
125 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
|
|
124 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
125 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
126 | 126 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
127 | 127 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
128 | 128 |
CollectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
mappings/DwC.cs-VegBIEN.specimens.csv | ||
---|---|---|
60 | 60 |
globalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
61 | 61 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
62 | 62 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
63 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/_if[@name=""if indirect voucher""]/else/catalognumber_dwc",
|
|
63 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
64 | 64 |
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
65 | 65 |
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_merge/2, |
66 | 66 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: catalogNumber: Moved direct/indirect voucher _if inwards to wrap just the value of catalognumber_dwc, not the catalognumber_dwc field node, to match the corresponding VegCSV mapping