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Revision 4062

Added by Aaron Marcuse-Kubitza over 12 years ago

mappings/DwC2-VegBIEN.specimens.csv: collectionID: Mapped to location.authorlocationcode as merge with collectionCode, the same way as it is for specimenreplicate.collectioncode_dwc

View differences:

inputs/MT/test/import.specimens.xml.ref
4 4 
        <authorlocationcode>
5 5 
            <_merge>
6 6 
                <1>$institutionCode</1>
7 
                <2>$collectionCode</2>
7 
                <2>
8 
                    <_merge>
9 
                        <1>$collectionCode</1>
10 
                        <2>$collectionID</2>
11 
                    </_merge>
12 
                </2>
8 13 
            </_merge>
9 14 
        </authorlocationcode>
10 15 
        <locationdetermination>
inputs/MT/maps/VegBIEN.specimens.csv
1 1 
MT[DwC],VegBIEN:,Comments
2 2 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
4 5 
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
5 6 
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
6 7 
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
inputs/XAL/maps/VegBIEN.specimens.csv
1 1 
"XAL[DwC,darwin:]:/content/record/",VegBIEN:,Comments
2 2 
InstitutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 4 
CatalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 5 
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6 6 
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
inputs/NY/maps/VegBIEN.specimens.csv
1 1 
NY[DwC],VegBIEN:,Comments
2 2 
InstitutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 4 
CatalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 5 
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6 6 
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
inputs/ACAD/test/import.specimens.xml.ref
4 4 
        <authorlocationcode>
5 5 
            <_merge>
6 6 
                <1>$institutionCode</1>
7 
                <2>$collectionCode</2>
7 
                <2>
8 
                    <_merge>
9 
                        <1>$collectionCode</1>
10 
                        <2>$collectionID</2>
11 
                    </_merge>
12 
                </2>
8 13 
                <3><_if name="if indirect voucher"><else>$catalogNumber</else></_if></3>
9 14 
            </_merge>
10 15 
        </authorlocationcode>
inputs/ACAD/maps/VegBIEN.specimens.csv
1 1 
ACAD[DwC],VegBIEN:,Comments
2 2 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
4 5 
catalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 6 
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
6 7 
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
inputs/REMIB/maps/VegBIEN.specimens.csv
1 1 
REMIB[DwC],VegBIEN:,Comments
2 
acronym,/location/authorlocationcode/_alt/3/_merge/2,
2 
acronym,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
3 3 
lat_deg,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
4 4 
long_deg,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
5 5 
county,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
inputs/ARIZ/maps/VegBIEN.specimens.csv
1 1 
ARIZ[DwC],VegBIEN:,Comments
2 2 
InstitutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 4 
CatalogNumberNumeric,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 5 
VerbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
6 6 
MaximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
inputs/GBIF/maps/VegBIEN.specimens.csv
1 1 
GBIF[DwC],VegBIEN:,Comments
2 2 
InstitutionCD,/location/authorlocationcode/_alt/3/_merge/1,
3 
CollectionCD,/location/authorlocationcode/_alt/3/_merge/2,
3 
CollectionCD,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 4 
CatalogNO,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 5 
MaximumElevationInMeter,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6 6 
MinimumElevationInMeter,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
inputs/NCU-NCSC/maps/VegBIEN.specimens.csv
1 1 
NCU-NCSC[DwC],VegBIEN:,Comments
2 
SeriesName,/location/authorlocationcode/_alt/3/_merge/2,
2 
SeriesName,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
3 3 
Barcode,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
4 4 
Elevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
5 5 
Accuracy,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
inputs/SpeciesLink/test/import.specimens.xml.ref
12 12 
                </1>
13 13 
                <2>
14 14 
                    <_merge>
15 
                        <0>$dwc_dwcore_CollectionCode</0>
16 
                        <1>$conceptual_darwin_2003_1_0_CollectionCode</1>
17 
                        <2>$dwc_terms_collectionCode</2>
15 
                        <1>
16 
                            <_merge>
17 
                                <0>$dwc_dwcore_CollectionCode</0>
18 
                                <1>$conceptual_darwin_2003_1_0_CollectionCode</1>
19 
                                <2>$dwc_terms_collectionCode</2>
20 
                            </_merge>
21 
                        </1>
22 
                        <2>$dwc_terms_collectionID</2>
18 23 
                    </_merge>
19 24 
                </2>
20 25 
                <3>
inputs/SpeciesLink/maps/VegBIEN.specimens.csv
1 1 
"SpeciesLink[DwC,dwc_dwcore_,dwc_curatorial_,dwc_geospatial_,http__purl_org_,dwc_terms_,conceptual_darwin_2003_1_0_]",VegBIEN:,Comments
2 2 
InstitutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 3 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
4 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2,
5 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
4 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
5 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
6 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
6 7 
CatalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
7 8 
catalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
8 9 
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
inputs/MO/maps/VegBIEN.specimens.csv
1 1 
MO[DwC],VegBIEN:,Comments
2 2 
InstitutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 4 
CatalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 5 
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
6 6 
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
inputs/QMOR/test/import.specimens.xml.ref
4 4 
        <authorlocationcode>
5 5 
            <_merge>
6 6 
                <1>$institutionCode</1>
7 
                <2>$collectionCode</2>
7 
                <2>
8 
                    <_merge>
9 
                        <1>$collectionCode</1>
10 
                        <2>$collectionID</2>
11 
                    </_merge>
12 
                </2>
8 13 
                <3><_if name="if indirect voucher"><else>$catalogNumber</else></_if></3>
9 14 
            </_merge>
10 15 
        </authorlocationcode>
inputs/QMOR/maps/VegBIEN.specimens.csv
1 1 
QMOR[DwC],VegBIEN:,Comments
2 2 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
4 5 
catalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 6 
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
6 7 
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
mappings/DwC2-VegBIEN.specimens.csv
1 1 
DwC,VegBIEN:,Comments
2 2 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
4 5 
catalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 6 
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
6 7 
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
mappings/for_review/DwC2-VegBIEN.specimens.csv
1 1 
DwC,VegBIEN:,Comments
2 2 
institutionCode,//location/authorlocationcode,
3 3 
collectionCode,//location/authorlocationcode,
4 
collectionID,//location/authorlocationcode,
4 5 
catalogNumber,"//location/authorlocationcode/_if[@name=""if indirect voucher""]/else",
5 6 
verbatimElevation,//location/elevation,
6 7 
maximumElevationInMeters,//location/elevation,
mappings/DwC-VegBIEN.specimens.csv
1 1 
DwC,VegBIEN:,Comments
2 2 
InstitutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 3 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
4 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2,
5 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
4 
CollectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
5 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
6 
CollectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
7 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
6 8 
CatalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
7 9 
catalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
8 10 
VerbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
mappings/DwC.cs-VegBIEN.specimens.csv
1 1 
DwC,VegBIEN:,Comments
2 2 
institutionCode,/location/authorlocationcode/_alt/3/_merge/1,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2,
3 
collectionCode,/location/authorlocationcode/_alt/3/_merge/2/_merge/1,
4 
collectionID,/location/authorlocationcode/_alt/3/_merge/2/_merge/2,
4 5 
catalogNumber,"/location/authorlocationcode/_alt/3/_merge/3/_if[@name=""if indirect voucher""]/else",
5 6 
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
6 7 
maximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",

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