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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 3701 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Added synchronization of back...
  bin 4068 over 12 years Aaron Marcuse-Kubitza bin/map: collision_suffix: Setting back to _alt...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 4069 over 12 years Aaron Marcuse-Kubitza inputs/SALVIAS-CSV/maps/VegCSV.organisms.csv: A...
  lib 4041 over 12 years Aaron Marcuse-Kubitza xml_func.py: Added simplify()
  mappings 4066 over 12 years Aaron Marcuse-Kubitza mappings/DwC2-VegBIEN.specimens.csv, VegCSV-Veg...
  schemas 4071 over 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonoccurrence: Renamed t...
  to_do 2547 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect the mont...
Makefile 10.1 KB 3764 over 12 years Aaron Marcuse-Kubitza root Makefile, input.Makefile: Maps validation:...
README.TXT 9.03 KB 3845 over 12 years Aaron Marcuse-Kubitza README.TXT: After a new import: Added steps to ...
map 1.22 KB 3475 over 12 years Aaron Marcuse-Kubitza root map: Run bin/map with a nice increment of ...

Latest revisions

# Date Author Comment
4071 08/16/2012 12:59 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonoccurrence: Renamed taxonoccurrence_locationevent_1_to_1 to taxonoccurrence_unique_within_locationevent and added new authortaxoncode to it
4070 08/16/2012 12:57 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonoccurrence: Added authortaxoncode to store unique keys that are unique within the locationevent rather than within the datasource
4069 08/16/2012 12:43 PM Aaron Marcuse-Kubitza

inputs/SALVIAS-CSV/maps/VegCSV.organisms.csv: Added _alt to height_m, stem_height_m to choose between them when both are specified (rather than having bin/map choose their priority order based on their order in the map). Note that when both of the heights are specified, they are always either the same, or height_m is invalid (see <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS_issues#Some-organisms-have-one-stem-but-different-heights-in-the-organisms-and-stems-tables&gt;).
4068 08/16/2012 12:39 PM Aaron Marcuse-Kubitza

bin/map: collision_suffix: Setting back to _alt to test if _merge caused the SpeciesLink slowdown. SpeciesLink contains a huge number of equivalent columns due to each DwC term being present with namespaces for all versions of the DwC schema, and these columns can be combined either using _alt or _merge. _merge is only useful if the values in different versions of the same DwC field are different, which is not likely the case.
4067 08/16/2012 12:29 PM Aaron Marcuse-Kubitza

inputs/import.stats.xls: Updated with stats from latest import. The import time for SpeciesLink (the slowest datasource) doubled, to 16 hours, most likely due to replacing _alt with the slower _merge, which preserves more input data.
4066 08/15/2012 11:30 AM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv, VegCSV-VegBIEN.specimens.csv: occurrenceID: Mapped to location.authorlocationcode instead of sourceaccessioncode so that it would not override any location- or event-related IDs in location.authorlocationcode merely by being mapped to the sourceaccessioncode field (which takes precedence over the authorlocationcode when specified)
4065 08/15/2012 10:43 AM Aaron Marcuse-Kubitza

mappings/VegCSV-VegBIEN.specimens.csv: occurrenceID: Mapped to specimenreplicate.sourceaccessioncode for mergability with DwC
4064 08/15/2012 09:14 AM Aaron Marcuse-Kubitza

mappings/VegCSV-VegBIEN.specimens.csv: Mapped voucherType to indirect voucher _if statements' conditions
4063 08/15/2012 09:02 AM Aaron Marcuse-Kubitza

mappings/VegCSV-VegBIEN.specimens.csv: locationID: location.sourceaccessioncode mapping: Added /_alt suffix for mergability with DwC
4062 08/15/2012 08:53 AM Aaron Marcuse-Kubitza

mappings/DwC2-VegBIEN.specimens.csv: collectionID: Mapped to location.authorlocationcode as merge with collectionCode, the same way as it is for specimenreplicate.collectioncode_dwc

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